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Conserved domains on  [gi|446012410|ref|WP_000090265|]
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antiterminator Q family protein [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 3-119 1.72e-69

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


:

Pssm-ID: 428991  Cd Length: 118  Bit Score: 204.02  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446012410    3 RDIQMVLERWGAWAANNHEDVTWPSIAAGFKGLIPTKVKSRPQCSDDDAMIICGCMARLNKNNQYLHDLLVDYYVGGMTF 82
Cdd:pfam06530   2 RDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMSK 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446012410   83 MALARKHRCSDGLIGKRLYKAEGIIEGMLMALNVRLD 119
Cdd:pfam06530  82 RAIARKLKCSEGEIRKKLQTAEGFIEGCLAALDVKLE 118
 
Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 3-119 1.72e-69

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


Pssm-ID: 428991  Cd Length: 118  Bit Score: 204.02  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446012410    3 RDIQMVLERWGAWAANNHEDVTWPSIAAGFKGLIPTKVKSRPQCSDDDAMIICGCMARLNKNNQYLHDLLVDYYVGGMTF 82
Cdd:pfam06530   2 RDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMSK 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446012410   83 MALARKHRCSDGLIGKRLYKAEGIIEGMLMALNVRLD 119
Cdd:pfam06530  82 RAIARKLKCSEGEIRKKLQTAEGFIEGCLAALDVKLE 118
 
Name Accession Description Interval E-value
Phage_antitermQ pfam06530
Phage antitermination protein Q; This family consists of several phage antitermination protein ...
 3-119 1.72e-69

Phage antitermination protein Q; This family consists of several phage antitermination protein Q and related bacterial sequences. Antiterminator proteins control gene expression by recognising control signals near the promoter and preventing transcriptional termination which would otherwise occur at sites that may be a long way downstream.


Pssm-ID: 428991  Cd Length: 118  Bit Score: 204.02  E-value: 1.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446012410    3 RDIQMVLERWGAWAANNHEDVTWPSIAAGFKGLIPTKVKSRPQCSDDDAMIICGCMARLNKNNQYLHDLLVDYYVGGMTF 82
Cdd:pfam06530   2 RDIQMVLERWGAWAASGRSGVDWSSIAAGFKGLLPSTSKSRPSCSDDDGLIIDGCVARLKKVRPEEHDLLVDYYVFGMSK 81

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446012410   83 MALARKHRCSDGLIGKRLYKAEGIIEGMLMALNVRLD 119
Cdd:pfam06530  82 RAIARKLKCSEGEIRKKLQTAEGFIEGCLAALDVKLE 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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