|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13721 |
PRK13721 |
conjugal transfer ATP-binding protein TraC; Provisional |
32-875 |
0e+00 |
|
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain] Cd Length: 844 Bit Score: 1725.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 32 VLGEMSFPQFSRLLPYRDYNQESGLFMNDTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRI 111
Cdd:PRK13721 1 VLGEMSFPQFSRLLPYRDYDQESGLFMNDTTMGFMLEAIPLNGANESIVEALDHMLRTKLPRGIPLCIHLMSSKLVGDRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 112 EYGLREFSWSGEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 191
Cdd:PRK13721 81 EYGLREFSWSGEQAERFNAITRAYYMRAALTQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 192 QGASIATQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENGRNSTARILNFH 271
Cdd:PRK13721 161 QGASITTQTVDAQAFISIVREMINHRPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 272 LARNPEIAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 351
Cdd:PRK13721 241 LAKNPEIAFLWQMADNYSNLLNPELSISCPFILTLTLEVEDQVKTQSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 352 LRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGV 431
Cdd:PRK13721 321 LRQRLGSNQSSLVSYFLNITAFCPDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGEGLFKDLKEAGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 432 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 511
Cdd:PRK13721 401 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 512 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENR 591
Cdd:PRK13721 481 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERIRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKKNR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 592 ARIDDVVDFLKNASDSEQYAGSPTIRSRLDEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAV 671
Cdd:PRK13721 561 ARIDDVVDFLKNARDSEQYADSPTIRSRLDEMIVLLDQYTANGTYGEYFNSDEPSLRDDARMVVLELGGLEDRPSLLVAV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 672 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 751
Cdd:PRK13721 641 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 752 GNSSYKIILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 831
Cdd:PRK13721 721 GNSSYKIILKQSAKEFAKYNQLYPDQFSPLERDMIGGFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 800
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 445991922 832 FVQQKRKEGLSIHEAVWQLAWKKSGPEMASLEAWLEEHEKYRSV 875
Cdd:PRK13721 801 FVQQKRKEGLSIHEAVWQLAWKKFGPEMASLEAWLEEHEKYRSV 844
|
|
| TraC-F-type |
TIGR02746 |
type-IV secretion system protein TraC; The protein family described here is common among the F, ... |
44-854 |
0e+00 |
|
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain] Cd Length: 797 Bit Score: 1008.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 44 LLPYRDYNQESGLFMNDTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYGLREFSWSGE 123
Cdd:TIGR02746 1 WLPYRAYDEESGIFMNRHSMGFGLELTPLSGADESLVESLSSLLRTDLPEGTDIQVLLWGSPQIGPFLDRNEEQFSQNGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 124 QAERFNAITRAYYMKAAATQFplpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGASIATQTVDA 203
Cdd:TIGR02746 81 ILEKLARNRVKYYLNAAQKGF----FKNSGVTLRDFRLFLSVSIPFKSPNEDVIQELRSLRERIESTLRSAGFGCRRVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 204 QAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWN 283
Cdd:TIGR02746 157 EDLLSLVREMLNPDPDSIHPWPISYDPNQLLRDQIVDPDTDLEVHEGGLEVDHEDNQGEVKTRIRVFSIKRFPEEFTLWQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 284 MADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSV 363
Cdd:TIGR02746 237 TGNLIGDLLNPSLQITCPFLLSFTVRVEDQVKKKAKATAKAKDLNKQAKSSMAKWVPSLEKKLKEIKYLREAIASGGDSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 364 VSYFLNITAFCkdNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANL 443
Cdd:TIGR02746 317 VSMYYNVLLFT--NPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAFLAALPFNPTEGLFEDLKKAGRVRTLSSANAVNL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 444 MPLVADNPLTP-AGLLAPTYRNQLAFIDIFFRGMnnTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKS 522
Cdd:TIGR02746 395 LPLIADWKGTKgSGLLLPTRRGQLSAFDPFDSDS--TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKK 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 523 LCENMGGVYLDGE---TLRFNPFA--NITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDV 597
Cdd:TIGR02746 473 LCEMLGGTYIEFSpesNICLNPFTgnNVTEIDDEIDQITALIALMASPEGGLSDEQRSTLEEAILAAWKEYGNEATITDV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 598 VDFLKNASDSEQYagsptirSRLDEMIVLLDQYTANGTYGQYFNSdEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLII 677
Cdd:TIGR02746 553 QDALQQLEDDEND-------PRIKDLGKMLNPYTSHGVYGRYFNG-PNNLDFSNRFVVLELEELEDRPDLQAVVLFSLMV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 678 YIENRMYRTPRNLKKLNVIDEGWRLLDFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYK 757
Cdd:TIGR02746 625 RITGEMYLTPRKRRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDFYS---SPEARAAYANSDWK 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 758 IILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAAKDQwFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKR 837
Cdd:TIGR02746 702 IILRQSAESIAKLKAENPFTFSPFEKRLIKSLRTAKGA-FSELLIRSGEGSSVHRLFVDPFSRVLFSTDGPEFEEVEELR 780
|
810
....*....|....*..
gi 445991922 838 KEGLSIHEAVWQLAWKK 854
Cdd:TIGR02746 781 EQGLSLEEAIEQLAQKH 797
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
288-840 |
8.20e-116 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 363.88 E-value: 8.20e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 288 YSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSVVSYF 367
Cdd:COG3451 23 SPGLLDPLLQLPCEFIVTQSFTPLDKDEALKKLKRKRRRLESKRKSEQALVDDDAESQAEDAEEALDELQSGGERLGEVH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 368 LNITAFCKDNNEtALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLkeagvvqrAESFNVANLMPLV 447
Cdd:COG3451 103 LTLTVFADDLEE-LEEAVREVESALQSAGFTLVRETLNQEEAFLSSLPGNFDYRLRRRL--------LTTSNLAALFPFH 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 448 ADNPLTPAGL-LAPTYRNQLAFIDIFFRgmnNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCEN 526
Cdd:COG3451 174 SFELGDPWGIyLLNTRSGTPVFFDFHDG---LDNGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 527 MGGVYLD---GETLRFNPFAnITDIDQSAERVRDQLSVMASPNG-NLDEVHEGLLLQAVRASW--LAKENRARIDDVVDF 600
Cdd:COG3451 251 LGGTYIDlspGSPTGLNPFD-LEDTEEKRDFLLELLELLLGREGePLTPEERAAIDRAVRALYrrADPEERTTLSDLYEL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 601 LKNASDSEqyagsptirsrldEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIE 680
Cdd:COG3451 330 LKEQPEAK-------------DLAARLEPYTKGGSYGWLFDGPTNLDLSDARFVVFDLTELLDNPELRPPVLLYLLHRIW 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 681 NRMYRTPRNLKKLNVIDEGWRLLDfkNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYKIIL 760
Cdd:COG3451 397 NRLRKNNDGRPTLIVIDEAWLLLD--NPAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLS---SPIAEAIIENSATKILL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 761 KQSAKEFAKYNQLYpdQFQPLQRDMIGKFGAAKDQwfssFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEG 840
Cdd:COG3451 472 PQPKADIEDYAELL--GLSERELELIRSAGRGKRD----FLIKQGNGSVVFRLDLSPEELALLSTKPEEVAILDELRAEH 545
|
|
| TraC_F_IV |
pfam11130 |
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ... |
39-277 |
3.21e-59 |
|
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain] Cd Length: 232 Bit Score: 201.74 E-value: 3.21e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 39 PQFSRLLPYRDYNQESGLFMN-DTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYgLRE 117
Cdd:pfam11130 1 PSFSDLLPYVAYDPETGLFLNeDGSVGFVFELSPLGGADESVRDTLESLLSDDLPDGTPVQFLLFASPDIGPYLDR-LRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 118 FSwSGEQAERFNAIT--RAYYMKAAATQFPlpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGAS 195
Cdd:pfam11130 80 YR-LGEQGGHLRAIArpRGLFLDSGVTGSL---SADWRGQLRRFRLVLSRKVPGKADLPTPIEALNELRDRLEASLRSAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 196 IATQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENgrnstARILNFHLARN 275
Cdd:pfam11130 156 LAARRLDPDDLIAWLRRWLNPDPSASWDPPADYDPDKDIAEQILDSDPRLDVEAGRLYFDGEPH-----RAVRVLSLRRF 230
|
..
gi 445991922 276 PE 277
Cdd:pfam11130 231 PE 232
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-760 |
4.13e-04 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 41.44 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 668 LVAVMFSLIIYIENRMYRTP---RNLKKLNVIDEgwrlldFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKAS 744
Cdd:cd01127 53 LRALFFNQLFRALTELASLSpgrLPRRVWFILDE------FANLGRIPNLPNLLATGRKRGISVVLILQSLAQLEAVYGK 126
|
90
....*....|....*.
gi 445991922 745 SAARAAWGNSSYKIIL 760
Cdd:cd01127 127 DGAQTILGNCNTKLYL 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13721 |
PRK13721 |
conjugal transfer ATP-binding protein TraC; Provisional |
32-875 |
0e+00 |
|
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain] Cd Length: 844 Bit Score: 1725.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 32 VLGEMSFPQFSRLLPYRDYNQESGLFMNDTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRI 111
Cdd:PRK13721 1 VLGEMSFPQFSRLLPYRDYDQESGLFMNDTTMGFMLEAIPLNGANESIVEALDHMLRTKLPRGIPLCIHLMSSKLVGDRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 112 EYGLREFSWSGEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 191
Cdd:PRK13721 81 EYGLREFSWSGEQAERFNAITRAYYMRAALTQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 192 QGASIATQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENGRNSTARILNFH 271
Cdd:PRK13721 161 QGASITTQTVDAQAFISIVREMINHRPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 272 LARNPEIAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 351
Cdd:PRK13721 241 LAKNPEIAFLWQMADNYSNLLNPELSISCPFILTLTLEVEDQVKTQSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 352 LRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGV 431
Cdd:PRK13721 321 LRQRLGSNQSSLVSYFLNITAFCPDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGEGLFKDLKEAGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 432 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 511
Cdd:PRK13721 401 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 512 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENR 591
Cdd:PRK13721 481 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERIRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKKNR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 592 ARIDDVVDFLKNASDSEQYAGSPTIRSRLDEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAV 671
Cdd:PRK13721 561 ARIDDVVDFLKNARDSEQYADSPTIRSRLDEMIVLLDQYTANGTYGEYFNSDEPSLRDDARMVVLELGGLEDRPSLLVAV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 672 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 751
Cdd:PRK13721 641 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 752 GNSSYKIILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 831
Cdd:PRK13721 721 GNSSYKIILKQSAKEFAKYNQLYPDQFSPLERDMIGGFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 800
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 445991922 832 FVQQKRKEGLSIHEAVWQLAWKKSGPEMASLEAWLEEHEKYRSV 875
Cdd:PRK13721 801 FVQQKRKEGLSIHEAVWQLAWKKFGPEMASLEAWLEEHEKYRSV 844
|
|
| TraC-F-type |
TIGR02746 |
type-IV secretion system protein TraC; The protein family described here is common among the F, ... |
44-854 |
0e+00 |
|
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain] Cd Length: 797 Bit Score: 1008.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 44 LLPYRDYNQESGLFMNDTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYGLREFSWSGE 123
Cdd:TIGR02746 1 WLPYRAYDEESGIFMNRHSMGFGLELTPLSGADESLVESLSSLLRTDLPEGTDIQVLLWGSPQIGPFLDRNEEQFSQNGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 124 QAERFNAITRAYYMKAAATQFplpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGASIATQTVDA 203
Cdd:TIGR02746 81 ILEKLARNRVKYYLNAAQKGF----FKNSGVTLRDFRLFLSVSIPFKSPNEDVIQELRSLRERIESTLRSAGFGCRRVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 204 QAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWN 283
Cdd:TIGR02746 157 EDLLSLVREMLNPDPDSIHPWPISYDPNQLLRDQIVDPDTDLEVHEGGLEVDHEDNQGEVKTRIRVFSIKRFPEEFTLWQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 284 MADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSV 363
Cdd:TIGR02746 237 TGNLIGDLLNPSLQITCPFLLSFTVRVEDQVKKKAKATAKAKDLNKQAKSSMAKWVPSLEKKLKEIKYLREAIASGGDSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 364 VSYFLNITAFCkdNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANL 443
Cdd:TIGR02746 317 VSMYYNVLLFT--NPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAFLAALPFNPTEGLFEDLKKAGRVRTLSSANAVNL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 444 MPLVADNPLTP-AGLLAPTYRNQLAFIDIFFRGMnnTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKS 522
Cdd:TIGR02746 395 LPLIADWKGTKgSGLLLPTRRGQLSAFDPFDSDS--TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKK 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 523 LCENMGGVYLDGE---TLRFNPFA--NITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDV 597
Cdd:TIGR02746 473 LCEMLGGTYIEFSpesNICLNPFTgnNVTEIDDEIDQITALIALMASPEGGLSDEQRSTLEEAILAAWKEYGNEATITDV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 598 VDFLKNASDSEQYagsptirSRLDEMIVLLDQYTANGTYGQYFNSdEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLII 677
Cdd:TIGR02746 553 QDALQQLEDDEND-------PRIKDLGKMLNPYTSHGVYGRYFNG-PNNLDFSNRFVVLELEELEDRPDLQAVVLFSLMV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 678 YIENRMYRTPRNLKKLNVIDEGWRLLDFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYK 757
Cdd:TIGR02746 625 RITGEMYLTPRKRRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDFYS---SPEARAAYANSDWK 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 758 IILKQSAKEFAKYNQLYPDQFQPLQRDMIGKFGAAKDQwFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKR 837
Cdd:TIGR02746 702 IILRQSAESIAKLKAENPFTFSPFEKRLIKSLRTAKGA-FSELLIRSGEGSSVHRLFVDPFSRVLFSTDGPEFEEVEELR 780
|
810
....*....|....*..
gi 445991922 838 KEGLSIHEAVWQLAWKK 854
Cdd:TIGR02746 781 EQGLSLEEAIEQLAQKH 797
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
288-840 |
8.20e-116 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 363.88 E-value: 8.20e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 288 YSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSVVSYF 367
Cdd:COG3451 23 SPGLLDPLLQLPCEFIVTQSFTPLDKDEALKKLKRKRRRLESKRKSEQALVDDDAESQAEDAEEALDELQSGGERLGEVH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 368 LNITAFCKDNNEtALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLkeagvvqrAESFNVANLMPLV 447
Cdd:COG3451 103 LTLTVFADDLEE-LEEAVREVESALQSAGFTLVRETLNQEEAFLSSLPGNFDYRLRRRL--------LTTSNLAALFPFH 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 448 ADNPLTPAGL-LAPTYRNQLAFIDIFFRgmnNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCEN 526
Cdd:COG3451 174 SFELGDPWGIyLLNTRSGTPVFFDFHDG---LDNGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 527 MGGVYLD---GETLRFNPFAnITDIDQSAERVRDQLSVMASPNG-NLDEVHEGLLLQAVRASW--LAKENRARIDDVVDF 600
Cdd:COG3451 251 LGGTYIDlspGSPTGLNPFD-LEDTEEKRDFLLELLELLLGREGePLTPEERAAIDRAVRALYrrADPEERTTLSDLYEL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 601 LKNASDSEqyagsptirsrldEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIE 680
Cdd:COG3451 330 LKEQPEAK-------------DLAARLEPYTKGGSYGWLFDGPTNLDLSDARFVVFDLTELLDNPELRPPVLLYLLHRIW 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 681 NRMYRTPRNLKKLNVIDEGWRLLDfkNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYKIIL 760
Cdd:COG3451 397 NRLRKNNDGRPTLIVIDEAWLLLD--NPAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLS---SPIAEAIIENSATKILL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 761 KQSAKEFAKYNQLYpdQFQPLQRDMIGKFGAAKDQwfssFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEG 840
Cdd:COG3451 472 PQPKADIEDYAELL--GLSERELELIRSAGRGKRD----FLIKQGNGSVVFRLDLSPEELALLSTKPEEVAILDELRAEH 545
|
|
| TraC_F_IV |
pfam11130 |
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ... |
39-277 |
3.21e-59 |
|
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain] Cd Length: 232 Bit Score: 201.74 E-value: 3.21e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 39 PQFSRLLPYRDYNQESGLFMN-DTTMGFMLEAIPINGANKSIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYgLRE 117
Cdd:pfam11130 1 PSFSDLLPYVAYDPETGLFLNeDGSVGFVFELSPLGGADESVRDTLESLLSDDLPDGTPVQFLLFASPDIGPYLDR-LRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 118 FSwSGEQAERFNAIT--RAYYMKAAATQFPlpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGAS 195
Cdd:pfam11130 80 YR-LGEQGGHLRAIArpRGLFLDSGVTGSL---SADWRGQLRRFRLVLSRKVPGKADLPTPIEALNELRDRLEASLRSAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 196 IATQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLNVRADYLTLGLRENgrnstARILNFHLARN 275
Cdd:pfam11130 156 LAARRLDPDDLIAWLRRWLNPDPSASWDPPADYDPDKDIAEQILDSDPRLDVEAGRLYFDGEPH-----RAVRVLSLRRF 230
|
..
gi 445991922 276 PE 277
Cdd:pfam11130 231 PE 232
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
479-761 |
5.45e-16 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 80.81 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 479 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMG-----GVY--LDGETLRFNPFanitDIDQS 551
Cdd:COG0433 46 LNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPGAeradvGVFdpGAGRPLPINPW----DLFAT 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 552 AERVRDqlsvMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDVVDFLKNASDSEQYAGSP------TIRSRLDEMIV 625
Cdd:COG0433 122 ASELGP----LLLSRLDLNDTQRGVLREALRLADDKGLLLLDLKDLIALLEEGEELGEEYGNVsaasagALLRRLESLES 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 626 LldqytangtyGQYFNSDEPS----LRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRMYRTPRNLKK--LNVIDEG 699
Cdd:COG0433 198 A----------DGLFGEPGLDledlLRTDGRVTVIDLSGLPEELQSTFVLWLLRELFEARPEVGDADDRKLplVLVIDEA 267
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 445991922 700 WRLLDFKNRKVGEFIEkgyRTARR----HTGAYItITQNIVDFDSDkassaaraAWGNSSYKIILK 761
Cdd:COG0433 268 HLLAPAAPSALLEILE---RIAREgrkfGVGLIL-ATQRPSDIDED--------VLSQLGTQIILR 321
|
|
| DUF5934 |
pfam19357 |
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ... |
290-446 |
1.11e-15 |
|
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain] Cd Length: 172 Bit Score: 75.51 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 290 NLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQsSVVSYFLN 369
Cdd:pfam19357 3 DMFNDKLRLPCPVATSLCLVYPDQEAASSKAGYKFMRTTSLADSKSARFLPQLKEQSAEWQHVQDELRQGR-KLVRAFYS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 370 ITAFCK----DNNETALEveqdilNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANLMP 445
Cdd:pfam19357 82 VTAFSPkgkgDAHERTLK------SVYKAAGWDLIDERYLQIMGLLAAMPLTLADGLASDLERMKRFRTMLTTTAANIAP 155
|
.
gi 445991922 446 L 446
Cdd:pfam19357 156 L 156
|
|
| P-loop_TraG |
pfam19044 |
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ... |
468-763 |
3.26e-15 |
|
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain] Cd Length: 413 Bit Score: 78.72 E-value: 3.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 468 FIDIFFRGMNN---TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGGVYL---DGETLRFNP 541
Cdd:pfam19044 14 HVDISDEPMKKgiiTNRNKFILGPSGSGKSFFTNHMVRSYYEQGAHVVLVDVGHSYKGLCELVGGYYFtysEENPIRFNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 542 FAnITDidqsaervRDQLSVmaspngnldEVHEGL--LLQAV---------RASWLAKEN--------RARIDDVV---- 598
Cdd:pfam19044 94 FY-IGD--------GDVLDT---------EKKESIktLLLALwkkddesftRSEYVALSNaltlyyehLEKDPDIFpcfn 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 599 ---DFLKNasDSEQYAGSPTIRSR---LDEMIVLLDQYTANGTYGQYFNSDEP----SLRddakMVVLELGGLEDRPSLL 668
Cdd:pfam19044 156 tfyEFLRD--EYLKVLEEDKVKEKdfdIDNFLYVLRPYYKGGEFDYLLNATENldllNER----FIVFELDNIKDHPILF 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 669 VAVmfSLII---YIeNRMyRTPRNLKKLNVIDEGWRLLDFKNrkVGEFIEKGYRTARRHTGAYITITQNIvdfdSDKASS 745
Cdd:pfam19044 230 PVV--TIIImevFI-SKM-RKLKGIRKMILIEEAWKAIAKEG--MAEYIKYLFKTVRKFFGEAIVVTQEV----DDIISS 299
|
330 340
....*....|....*....|
gi 445991922 746 A--ARAAWGNSSYKIILKQS 763
Cdd:pfam19044 300 PivKDAIINNSDCKILLDQR 319
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
482-770 |
3.69e-14 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 75.41 E-value: 3.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 482 NMAVCGTSGAGKT-GLIQPLIRSvLDSGGFAVVFDM-GDGYK---SLCENMGG--VYLD----GETLRFNPFA---NITD 547
Cdd:COG3505 1 HVLVIGPTGSGKTvGLVIPNLTQ-LARGESVVVTDPkGDLAEltaGFRRRAGYdvYVFDpfdpERSHRWNPLDeirDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 548 IDQSAERVRDQLS-----------------------VMASPNGNLDEVHEGLLLQAVR-ASWLAKENRARIDDVVDFLKN 603
Cdd:COG3505 80 AQELAEALIPALGgggggdpfwreaarallaalilaLAEEGRRTLADVYRLLSEPEEElRELLEALPESPHPPVADTLAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 604 -ASDSEQYAGS--PTIRSRLDEMivlldqytANGTYGQYFNSDEPSLRD--DAKMVVLELGGLEDRPSL--LVAVMFSLI 676
Cdd:COG3505 160 fLNAAEKTRSSvlSTLASALELL--------SDPEVAALTSGSDFDLRDliREKGTLYLVLPPDDLSTLapLLRLLLSQL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 677 IyieNRMYRTPRNLKKLN-----VIDEgwrlldFKNrkVG--EFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARA 749
Cdd:COG3505 232 I---RALLRRAERSGRLPrpvllLLDE------FAN--LGrlPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAET 300
|
330 340
....*....|....*....|.
gi 445991922 750 AWGNSSYKIILKQSAKEFAKY 770
Cdd:COG3505 301 ILGNCGTKIFLGVNDPETAEY 321
|
|
| PRK13873 |
PRK13873 |
conjugal transfer ATPase TrbE; Provisional |
483-704 |
9.61e-07 |
|
conjugal transfer ATPase TrbE; Provisional
Pssm-ID: 237536 [Multi-domain] Cd Length: 811 Bit Score: 52.61 E-value: 9.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 483 MAVCGTSGAGKT---GLIQPLIRSVLDSGGFAvvFDMGDGYKSLCENMGGVYLD-----GETLRFNPFAnitDIDQSAER 554
Cdd:PRK13873 444 TLVVGPTGAGKSvllALMALQFRRYPGAQVFA--FDFGGSIRAATLAMGGDWHDlgggaDGSVALQPLA---RIDDEAER 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 555 vrdqlsvmaspngnldevheglllqAVRASW----LAKENRARIDDVVDFLKNASDSeqYAGSPTIRSRLDEMIVLLDQ- 629
Cdd:PRK13873 519 -------------------------AWAAEWiagiLAREGVAVTPEVKEHIWSALTS--LASAPVEERTLTGLSVLLQSn 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 630 --------YTANGTYGQYFNSDEPSLrDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRMYRTPrnlkKLNVIDEGWR 701
Cdd:PRK13873 572 alkqalapYCLGGPHGRLLDADAERL-GSADVQAFEMEGLMGTKAAAPAVLSYLFHRIEDRFDGRP----TLLILDEAWL 646
|
...
gi 445991922 702 LLD 704
Cdd:PRK13873 647 FLD 649
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-760 |
4.13e-04 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 41.44 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 668 LVAVMFSLIIYIENRMYRTP---RNLKKLNVIDEgwrlldFKNRKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKAS 744
Cdd:cd01127 53 LRALFFNQLFRALTELASLSpgrLPRRVWFILDE------FANLGRIPNLPNLLATGRKRGISVVLILQSLAQLEAVYGK 126
|
90
....*....|....*.
gi 445991922 745 SAARAAWGNSSYKIIL 760
Cdd:cd01127 127 DGAQTILGNCNTKLYL 142
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
483-770 |
3.00e-03 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 40.74 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 483 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYkslcenMGGVYLDGETLRFNPF---------ANITDIDQSAE 553
Cdd:pfam10412 18 TLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAF------TERFYDPGRDILLNPLdarspawspFAECKTPADFA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 554 RVRDQLSVmASPNGNLD-------EVHEGLLLQAVR---ASWLAKEN---RARIDDVVDFLKNAS-------DSEQYAGS 613
Cdd:pfam10412 92 AIAAALIP-EDGGGSDPfwalaarTVLVDTLRALQRtgrKTNAALLRallTADLDELHELLAGTAaapltapEAERTTAS 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 614 ptIRSRLDEMIVLLdQYTANGtyGQYF-------NSDEPSL----RDDAKMVVLelggledRPslLVAVMFSLIIYIENR 682
Cdd:pfam10412 171 --IRATLATNLRAL-RFLAPD--GERFsirewitEEDPGGWlfitYRADQRAAL-------RP--LLSCWLDLAIRALLS 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991922 683 MYRTpRNLKKLNVIDEgwrlLDFKNRKvgEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAWGNSSYKIILKQ 762
Cdd:pfam10412 237 LPPS-RDRRLWFFLDE----LPALGRL--PSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRV 309
|
....*...
gi 445991922 763 SAKEFAKY 770
Cdd:pfam10412 310 SDGETAEL 317
|
|
| |
