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Conserved domains on  [gi|445970274|ref|WP_000048129|]
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MULTISPECIES: DUF1270 family protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1270 super family cl06110
Protein of unknown function (DUF1270); This family consists of several hypothetical ...
 1-53 5.15e-13

Protein of unknown function (DUF1270); This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06900:

Pssm-ID: 284349  Cd Length: 53  Bit Score: 56.17  E-value: 5.15e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 445970274   1 MSKTYKSYLVAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
Cdd:pfam06900  1 MSDIYKSYLLAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
 
Name Accession Description Interval E-value
DUF1270 pfam06900
Protein of unknown function (DUF1270); This family consists of several hypothetical ...
 1-53 5.15e-13

Protein of unknown function (DUF1270); This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.


Pssm-ID: 284349  Cd Length: 53  Bit Score: 56.17  E-value: 5.15e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 445970274   1 MSKTYKSYLVAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
Cdd:pfam06900  1 MSDIYKSYLLAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
 
Name Accession Description Interval E-value
DUF1270 pfam06900
Protein of unknown function (DUF1270); This family consists of several hypothetical ...
 1-53 5.15e-13

Protein of unknown function (DUF1270); This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.


Pssm-ID: 284349  Cd Length: 53  Bit Score: 56.17  E-value: 5.15e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 445970274   1 MSKTYKSYLVAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
Cdd:pfam06900  1 MSDIYKSYLLAVLCFTVLAIVLMPFLYFTTAWSIAGFASIATFIFYKEYFYEE 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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