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Conserved domains on  [gi|445954037|ref|WP_000031892|]
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MULTISPECIES: ribosomal L7Ae/L30e/S12e/Gadd45 family protein [Bacteria]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein; 60S ribosomal protein L30( domain architecture ID 10014288)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein may be characterized as a K-turn binding protein; K-turns are RNA motifs comprised of a bulge flanked by canonical and noncanonical helices.| 60S ribosomal protein L30 may participate in a key bridging interaction between the large and small ribosomal subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-84 1.76e-44

putative ribosomal protein L7Ae-like; Provisional


:

Pssm-ID: 184172  Cd Length: 84  Bit Score: 138.06  E-value: 1.76e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80
Cdd:PRK13600  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 445954037 81 ALIK 84
Cdd:PRK13600 81 ALIK 84
 
Name Accession Description Interval E-value
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-84 1.76e-44

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 138.06  E-value: 1.76e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80
Cdd:PRK13600  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 445954037 81 ALIK 84
Cdd:PRK13600 81 ALIK 84
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 15-84 3.44e-10

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 51.31  E-value: 3.44e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037 15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGiNVNATIVALIK 84
Cdd:COG1358  17 VSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAITD 85
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 15-81 1.73e-03

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 34.11  E-value: 1.73e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 445954037  15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQI-NQKNIPVSFFKSKHALGKHVGINVNATIVA 81
Cdd:pfam01248 17 VLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALcKEKNVPYVKVPSKKELGEACGKKRPVSALA 84
 
Name Accession Description Interval E-value
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-84 1.76e-44

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 138.06  E-value: 1.76e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80
Cdd:PRK13600  1 MSKEKVARFNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 445954037 81 ALIK 84
Cdd:PRK13600 81 ALIK 84
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-84 7.00e-17

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 68.27  E-value: 7.00e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037  1 MSKEKVARfnKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80
Cdd:PRK13602  1 MSYEKVSQ--AKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAV 78


                ....
gi 445954037 81 ALIK 84
Cdd:PRK13602 79 AIIK 82
PRK06683 PRK06683
hypothetical protein; Provisional
 1-83 1.64e-10

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 52.00  E-value: 1.64e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037  1 MSKEKVArfNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80
Cdd:PRK06683  1 MSYQKVS--NAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAI 78


                ...
gi 445954037 81 ALI 83
Cdd:PRK06683 79 GII 81
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 15-84 3.44e-10

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 51.31  E-value: 3.44e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037 15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGiNVNATIVALIK 84
Cdd:COG1358  17 VSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAITD 85
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 15-84 1.04e-07

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 44.97  E-value: 1.04e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445954037 15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIVALIK 84
Cdd:PRK13601 10 VVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAAAADII 79
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 15-81 1.73e-03

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 34.11  E-value: 1.73e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 445954037  15 VVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQI-NQKNIPVSFFKSKHALGKHVGINVNATIVA 81
Cdd:pfam01248 17 VLGLKEVTKALERGEAKLVIIAEDCDPEEKVKLIPALcKEKNVPYVKVPSKKELGEACGKKRPVSALA 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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