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Conserved domains on  [gi|2556687972|gb|WKU78584|]
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S6 family peptidase (plasmid) [Escherichia albertii]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_S6 super family cl24145
Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The ...
5-41 5.59e-04

Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases Swiss:O32555 from E. coli O157:H7 cleaves human coagulation factor V and Swiss:O88093 is a hemoglobin protease from E. coli EB1.


The actual alignment was detected with superfamily member pfam02395:

Pssm-ID: 396804  Cd Length: 784  Bit Score: 34.57  E-value: 5.59e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2556687972   5 LDKASMIDFSSVNIGSNPgegATLVNPQCVVSVKHKG 41
Cdd:pfam02395  44 TKNAPMIDFSVVDVNKRI---ATLVGPQYIVSVKHNG 77
 
Name Accession Description Interval E-value
Peptidase_S6 pfam02395
Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The ...
5-41 5.59e-04

Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases Swiss:O32555 from E. coli O157:H7 cleaves human coagulation factor V and Swiss:O88093 is a hemoglobin protease from E. coli EB1.


Pssm-ID: 396804  Cd Length: 784  Bit Score: 34.57  E-value: 5.59e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2556687972   5 LDKASMIDFSSVNIGSNPgegATLVNPQCVVSVKHKG 41
Cdd:pfam02395  44 TKNAPMIDFSVVDVNKRI---ATLVGPQYIVSVKHNG 77
 
Name Accession Description Interval E-value
Peptidase_S6 pfam02395
Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The ...
5-41 5.59e-04

Immunoglobulin A1 protease; This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases Swiss:O32555 from E. coli O157:H7 cleaves human coagulation factor V and Swiss:O88093 is a hemoglobin protease from E. coli EB1.


Pssm-ID: 396804  Cd Length: 784  Bit Score: 34.57  E-value: 5.59e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2556687972   5 LDKASMIDFSSVNIGSNPgegATLVNPQCVVSVKHKG 41
Cdd:pfam02395  44 TKNAPMIDFSVVDVNKRI---ATLVGPQYIVSVKHNG 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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