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Full Results
NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Trachycarpus fortunei]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 897.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 1 MT I P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 81 ITVNAPEQL E N V QVP Q RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL L YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQL G N I QVP K RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 161 GGVAADLP H GWIDKCLDFCDY S LTGV V EYQKLITRNPIFLERVE R VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDY F LTGV A EYQKLITRNPIFLERVE G VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 241 CY N EFDWEVQWQKEGDSLARYLVRIGEM G ESIKIIQQALEGIPGGPYENLE V RRFDR A K N SEWNDFEYRFISKKPSP N FE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A RRFDR E K D SEWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2496748845 321 LSKQELYVRVEAPKGELGI Y LIGD N S T FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F LIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 897.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 1 MT I P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 81 ITVNAPEQL E N V QVP Q RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL L YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQL G N I QVP K RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 161 GGVAADLP H GWIDKCLDFCDY S LTGV V EYQKLITRNPIFLERVE R VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDY F LTGV A EYQKLITRNPIFLERVE G VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 241 CY N EFDWEVQWQKEGDSLARYLVRIGEM G ESIKIIQQALEGIPGGPYENLE V RRFDR A K N SEWNDFEYRFISKKPSP N FE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A RRFDR E K D SEWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2496748845 321 LSKQELYVRVEAPKGELGI Y LIGD N S T FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F LIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 585.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 87 E Q L ENVQ VP Q RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE LLY DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LGIE VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 167 LP H G WID K CLD F C DY SLTGVV EY QK L I T R N P IF LE R VER VG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y EC Y N E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DY FPKRLD EY ED L L T G N R IF KA R TKG VG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 247 WE V QWQK EGD SLA RYLVR IG EM GE S IK II Q Q A L EGI P G GP YENLEVRRFDRA K NSEWNDF E YRFIS - K KPSPN F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2496748845 326 L Y VR VE A P K GELG I YL IG D NS T F P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG F YL VS D GG T K P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
4.81e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 449.87
E-value: 4.81e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 89 L ENVQ VP Q RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE LLY DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LGIE VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 169 HG W IDKCLD F CDYSLTGVVE Y QK L ITR N P I FLE R VER VG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE C Y N E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQFPKRLRD Y ET L LNE N R I WKQ R TQG VG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 249 V QWQKE GD SLA RYL V R IG EM G ESIKII Q Q A LE GI P G GP YE n LEVRRFDRAKNSEWNDFEYRF I S -- K KPSPN F ELSKQ E L 326
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP IK - ADNPKLAPPPKERMLTSMEAL I H hf K LVTEG F RVPAG E V 319
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2496748845 327 YV RV E A PKGELG I Y L I G D NS T F P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 320 YV PI E S PKGELG F Y I I S D GG T K P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.39e-141
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 402.92
E-value: 2.39e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 125 I GA Q TPF F Y I FRERE LLY DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DY SLTGVV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DY FPKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 205 R VG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y EC Y N E F D WE V QWQK EGD SLA RYLVR IG EM GE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 G VG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 285 GP YEN l EVRRFDRAKNS E ---- WNDFEYR F is K KPSPN F ELSKQ E L YV R VEAPKGELG I YL IG D NS T F P W R W KIR P P G F I 360
Cdd:pfam00346 161 GP VMA - DDPKIALPPKE E mkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG F YL VS D GG T K P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2496748845 361 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 897.90
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 1 MT I P T TRKDLMIVNMGP Q HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 MT V P A TRKDLMIVNMGP H HPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 81 ITVNAPEQL E N V QVP Q RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL L YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVNAPEQL G N I QVP K RASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 161 GGVAADLP H GWIDKCLDFCDY S LTGV V EYQKLITRNPIFLERVE R VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDY F LTGV A EYQKLITRNPIFLERVE G VGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 241 CY N EFDWEVQWQKEGDSLARYLVRIGEM G ESIKIIQQALEGIPGGPYENLE V RRFDR A K N SEWNDFEYRFISKKPSP N FE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A RRFDR E K D SEWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2496748845 321 LSKQELYVRVEAPKGELGI Y LIGD N S T FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGI F LIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 731.15
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 1 M TIPT TR KDL M IV N M GP Q HPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GP H HPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 81 ITVNAPE Q L E N VQ VP Q RASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE LL YDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 ITVNAPE K L A N IP VP K RASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE MI YDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 160 IGGVAADLP H GW ID KCLDFCDY SLTGVV EY Q KLIT R NPIF LE R V E RV G I I GG EEAINWGLSGPMLRASG IQ WDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLP Y GW LE KCLDFCDY FGPKID EY E KLIT N NPIF RR R I E GL G T I SR EEAINWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 240 ECY NE FDW E V Q W QK EGD S LARY L VRI G EM G ES I KII Q QA LE GIPGGPYENLE VR R FDRA K N SEWN D F E Y RFIS KK PS P N F 319
Cdd:PRK07415 241 ECY DD FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AK R MAEG K K SEWN G F D Y QYVA KK VA P T F 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2496748845 320 ELSKQ ELYVR V E AP KGELGI YLI G D N STF PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGI FIQ G N N DVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 585.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 7 RKDL M IV NMGPQHPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V N A P 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V L A V 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 87 E Q L ENVQ VP Q RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE LLY DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LGIE VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 167 LP H G WID K CLD F C DY SLTGVV EY QK L I T R N P IF LE R VER VG IIGG E E AI NW G LS GP M LRASG IQW DLRK VDH Y EC Y N E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DY FPKRLD EY ED L L T G N R IF KA R TKG VG VLSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 247 WE V QWQK EGD SLA RYLVR IG EM GE S IK II Q Q A L EGI P G GP YENLEVRRFDRA K NSEWNDF E YRFIS - K KPSPN F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2496748845 326 L Y VR VE A P K GELG I YL IG D NS T F P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG F YL VS D GG T K P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
5-393
2.72e-173
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 488.51
E-value: 2.72e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 5 TTRKDLMIV N M GPQHP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVN 84
Cdd:PRK06075 1 EAEIRNYTL N F GPQHP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 85 A P E Q L ENVQ VP Q RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE L L Y DL F EA A TG M RM M H N Y F R I GGV A 164
Cdd:PRK06075 81 A V E K L LGIE VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE K L L DL Y EA V TG A RM H H A Y I R P GGV R 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 165 A DLP H G WIDKCL DF C DY SLTGVVE Y QK L I T R N P I FLE R VER VG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH YE C Y N E 244
Cdd:PRK06075 161 R DLP D G LLEDIR DF L DY FPKRLDD Y ET L L T D N R I WKQ R LVG VG VVSK E R A LAL G FT GPMLRASG VA WDLRK SQP YE V Y D E 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 245 F D WE V QWQ K E GD SLA RYLVR IG EM GE S IK II Q Q A L E -- GI P G GP Y -- ENLEV --- R R FDRAKNS E wndf EYRFIS K KPSP 317
Cdd:PRK06075 241 L D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPKI app A R LEMKTSM E ---- ALIHHF K LVTE 316
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2496748845 318 N F ELSKQ E L Y VR VE A PKGE L G I YL IG D NSTF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 317 G F RVPAG E V Y AA VE S PKGE F G V YL VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
5-393
3.53e-161
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 456.86
E-value: 3.53e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 5 TT R KDL M IV N M GPQHPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVN 84
Cdd:PRK12322 1 ML R TEE M LL N V GPQHPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 85 A P E QLENVQ VP Q RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE LLYD L FEAAT G M R MMH NY F RIGGV A 164
Cdd:PRK12322 81 A V E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE MIIN L LNELC G A R LTF NY M RIGGV K 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 165 A D L P H GWI D K CLD F CD Y SLTGVVE Y QK L I T R N P IFL E RV ER VGI IGG EEAI NWG LSG PM LR AS G IQ WDLRK VDH Y EC Y NE 244
Cdd:PRK12322 161 W D A P D GWI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV KG VGI YSA EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI Y DR 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 245 FD WEVQWQKE GD SLA RY LV R IG E MGE S I KII Q QA L E GI P - G GP Y enlevrrfd R AK NS ewndfey RF I s K K P spnfels K 323
Cdd:PRK12322 241 FD FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP V --------- L AK VP ------- KI I - K A P ------- K 296
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 324 Q E L YVR V E A P K GE L G I Y LIG D NSTF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 297 G E A YVR I E S P R GE I G C Y IAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
4.81e-158
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 449.87
E-value: 4.81e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 9 DL MI V N M GPQHPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVN A P E Q 88
Cdd:TIGR01962 1 EF MI L N L GPQHPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCL A V E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 89 L ENVQ VP Q RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE LLY DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LGIE VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 169 HG W IDKCLD F CDYSLTGVVE Y QK L ITR N P I FLE R VER VG IIGGEE A IN WGL S GPMLR A SGI Q WD L RK VDH YE C Y N E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQFPKRLRD Y ET L LNE N R I WKQ R TQG VG VVSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 249 V QWQKE GD SLA RYL V R IG EM G ESIKII Q Q A LE GI P G GP YE n LEVRRFDRAKNSEWNDFEYRF I S -- K KPSPN F ELSKQ E L 326
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP IK - ADNPKLAPPPKERMLTSMEAL I H hf K LVTEG F RVPAG E V 319
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2496748845 327 YV RV E A PKGELG I Y L I G D NS T F P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 320 YV PI E S PKGELG F Y I I S D GG T K P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.39e-141
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 402.92
E-value: 2.39e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 125 I GA Q TPF F Y I FRERE LLY DLFE AA TG M RM M H N YFR I GGVA A DLP H G WID K CLD F C DY SLTGVV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H S YFR P GGVA R DLP E G FLE K IRE F L DY FPKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 205 R VG IIGG E E A INW G LS GPMLRASG IQ WDLRK VDH Y EC Y N E F D WE V QWQK EGD SLA RYLVR IG EM GE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 G VG VLSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 285 GP YEN l EVRRFDRAKNS E ---- WNDFEYR F is K KPSPN F ELSKQ E L YV R VEAPKGELG I YL IG D NS T F P W R W KIR P P G F I 360
Cdd:pfam00346 161 GP VMA - DDPKIALPPKE E mkts MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG F YL VS D GG T K P Y R V KIR A P S F A 237
250 260 270
....*....|....*....|....*....|...
gi 2496748845 361 NLQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 238 NLQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
3.36e-131
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 394.91
E-value: 3.36e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 8 KDLM I V N M GPQHP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN AP E 87
Cdd:PRK13292 402 EETL I L N L GPQHP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 88 Q L ENVQ VP Q RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE LLY D LF E AA TG M RM MHNY FRIGGVA A DL 167
Cdd:PRK13292 482 T L CGIE VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE KIF D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 168 P H GW IDKCLD F CDYSLTGVV EY QK L I T R NPIF LE R VER VG I I GGE EA IN WG L SGP M LRA S G IQ WDLRK VDH Y EC Y NE FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRWFPGRLK EY ED L L T G NPIF KA R LKG VG V I TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG Y DR FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 248 EV QWQKE GD SL ARYLVR IG EM GE S IK I IQ QA LE G I PGG PYENLEV R RFDRA K NSEWN D F E --- YR F I -- SKK P S P nfel S 322
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQ K RDTLK D I E sli HH F V nv TRG P A P ---- P 717
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2496748845 323 K Q E L Y VRV EAPKGE L G IYLIG D NSTFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 718 K G E C Y AAI EAPKGE N G YFVVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
3.56e-119
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 357.31
E-value: 3.56e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 9 D L M IV N M GP Q HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V N A P E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V L A V E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 89 L ENVQ VP Q R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R ELL YD LF EA A TG M RM MHNY FRIGGVA A DLP 168
Cdd:PRK11742 270 L AGIT VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QKI YD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 169 H GW i D KC L - D F C D YSLTGVV EY Q K LIT RN P I FLE R VER V GIIGGE EA IN WG LS G PM LRA S GI QW D L RK VDH Y EC Y NE FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQG V AAYNAK EA LE WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 248 EV QWQKE GD SLA R YL V RIG EM GE S IK II Q Q A L EGI P G GP Y enlevrrfd R A --------- K NSEWNDF E --- YR F ISKKP 315
Cdd:PRK11742 429 EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP F --------- K A dhplttppp K ERTLQHI E tli TH F LQVSW 499
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2496748845 316 S P nf ELSKQ E LYVRV EA P KG ELGI YL IG D N ST FPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 500 G P -- VMPAN E SFQMI EA T KG INSY YL TS D G ST MSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
1.99e-99
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 303.82
E-value: 1.99e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 8 KDLMIVNM GP Q H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 78 TE A I tvnap E QLENVQ VP Q RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LLY DL F EA A TG M R MMHNY 157
Cdd:COG3261 195 CQ A V ----- E KAAGIE VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 158 FRI GGV AA DL PHGWIDKC L DFC D YSLTG V V E YQK L ITRN P IF L E R VERV G IIGG E E A INW G LS GP ML RASG IQW D L R KVD 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LVGT G VLSK E D A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2496748845 238 H Y EC Y N E F D WE V QWQK EGD SL AR Y LVR IG E MG ES IKI I Q QALE GI P G GP yen LE V RRFDRAKNS E W ndfeyrfiskkpsp 317
Cdd:COG3261 350 P Y AA Y D E L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP --- IR V PVPGLPPDG E G -------------- 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2496748845 318 nfelskqel YV RVEAP K GEL GI Y LIG D NSTFPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VH Y VRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
