unnamed protein product [Arabidopsis thaliana]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| F-box_SF super family | cl45894 | F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
24-61 | 9.00e-09 | ||
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures. The actual alignment was detected with superfamily member cd22152: Pssm-ID: 459239 Cd Length: 45 Bit Score: 48.72 E-value: 9.00e-09
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| Kelch_1 | pfam01344 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
108-149 | 4.46e-06 | ||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. : Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 41.44 E-value: 4.46e-06
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| Name | Accession | Description | Interval | E-value | ||
| F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
24-61 | 9.00e-09 | ||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 48.72 E-value: 9.00e-09
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| Kelch_1 | pfam01344 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
108-149 | 4.46e-06 | ||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 41.44 E-value: 4.46e-06
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| Kelch | smart00612 | Kelch domain; |
118-149 | 3.48e-04 | ||
Kelch domain; Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 36.38 E-value: 3.48e-04
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| Name | Accession | Description | Interval | E-value | ||
| F-box_AtAFR-like | cd22152 | F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
24-61 | 9.00e-09 | ||
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438923 Cd Length: 45 Bit Score: 48.72 E-value: 9.00e-09
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| Kelch_1 | pfam01344 | Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
108-149 | 4.46e-06 | ||
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 41.44 E-value: 4.46e-06
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| Kelch | smart00612 | Kelch domain; |
118-149 | 3.48e-04 | ||
Kelch domain; Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 36.38 E-value: 3.48e-04
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| Kelch_6 | pfam13964 | Kelch motif; |
106-150 | 5.94e-04 | ||
Kelch motif; Pssm-ID: 404790 [Multi-domain] Cd Length: 50 Bit Score: 36.16 E-value: 5.94e-04
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