unnamed protein product [Arabidopsis thaliana]
PPC domain-containing DNA-binding protein( domain architecture ID 10507306)
plants and prokaryotes conserved (PPC) domain-containing DNA-binding protein similar to plant AT-hook motif nuclear-localized (AHL) proteins, which act as transcription factors that specifically bind AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PCC | pfam03479 | Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) ... |
108-219 | 2.38e-20 | |||
Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs pfam02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea and the plant kingdom.The PPC domain has a single alpha-helix packed against an antiparallel beta-sheet, which is formed by five beta-strands. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Swiss:Q46QL5 which appear to form a zinc-binding site, and the domain has been observed to form homotrimers. The domain co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. : Pssm-ID: 460940 Cd Length: 115 Bit Score: 84.11 E-value: 2.38e-20
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Name | Accession | Description | Interval | E-value | |||
PCC | pfam03479 | Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) ... |
108-219 | 2.38e-20 | |||
Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs pfam02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea and the plant kingdom.The PPC domain has a single alpha-helix packed against an antiparallel beta-sheet, which is formed by five beta-strands. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Swiss:Q46QL5 which appear to form a zinc-binding site, and the domain has been observed to form homotrimers. The domain co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Pssm-ID: 460940 Cd Length: 115 Bit Score: 84.11 E-value: 2.38e-20
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DUF296 | cd11378 | Domain of unknown function found in archaea, bacteria, and plants; This domain is found in ... |
106-191 | 2.58e-20 | |||
Domain of unknown function found in archaea, bacteria, and plants; This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Pssm-ID: 211390 Cd Length: 113 Bit Score: 83.79 E-value: 2.58e-20
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AF0104 | COG1661 | Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain [General ... |
106-171 | 1.04e-03 | |||
Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain [General function prediction only]; Pssm-ID: 441267 Cd Length: 139 Bit Score: 38.67 E-value: 1.04e-03
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Name | Accession | Description | Interval | E-value | |||
PCC | pfam03479 | Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) ... |
108-219 | 2.38e-20 | |||
Plants and Prokaryotes Conserved (PCC) domain; This is a Plants and Prokaryotes Conserved (PPC) domain found in proteins that contain AT-hook motifs pfam02178 which strongly suggests a DNA-binding function for the proteins as a whole. Proteins with PPC domains are found in Bacteria, Archaea and the plant kingdom.The PPC domain has a single alpha-helix packed against an antiparallel beta-sheet, which is formed by five beta-strands. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Swiss:Q46QL5 which appear to form a zinc-binding site, and the domain has been observed to form homotrimers. The domain co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Pssm-ID: 460940 Cd Length: 115 Bit Score: 84.11 E-value: 2.38e-20
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DUF296 | cd11378 | Domain of unknown function found in archaea, bacteria, and plants; This domain is found in ... |
106-191 | 2.58e-20 | |||
Domain of unknown function found in archaea, bacteria, and plants; This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Pssm-ID: 211390 Cd Length: 113 Bit Score: 83.79 E-value: 2.58e-20
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AF0104 | COG1661 | Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain [General ... |
106-171 | 1.04e-03 | |||
Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain [General function prediction only]; Pssm-ID: 441267 Cd Length: 139 Bit Score: 38.67 E-value: 1.04e-03
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Blast search parameters | ||||
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