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Conserved domains on  [gi|1780598340|emb|VYS53254|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

Rer1 family protein( domain architecture ID 10505457)

retention in endoplasmic reticulum sorting receptor 1 (Rer1) family protein such as human RER1, which is involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 39-202 1.85e-98

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


:

Pssm-ID: 460860  Cd Length: 167  Bit Score: 282.88  E-value: 1.85e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340  39 RLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE---ASLTSG 115
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPSleqDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340 116 GSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1780598340 196 FGKKQYG 202
Cdd:pfam03248 161 FGKKKYG 167
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 39-202 1.85e-98

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 282.88  E-value: 1.85e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340  39 RLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE---ASLTSG 115
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPSleqDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340 116 GSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1780598340 196 FGKKQYG 202
Cdd:pfam03248 161 FGKKKYG 167
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
48-203 3.09e-55

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 173.89  E-value: 3.09e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340  48 QQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDP--EASLTSGGSLPTRRSDE 125
Cdd:COG5249    22 YQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMsfEQIEDDDEIEEGEKDNE 101

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1780598340 126 YRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGK 203
Cdd:COG5249   102 FRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKYKS 179
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 39-202 1.85e-98

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 282.88  E-value: 1.85e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340  39 RLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE---ASLTSG 115
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPSleqDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340 116 GSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1780598340 196 FGKKQYG 202
Cdd:pfam03248 161 FGKKKYG 167
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
48-203 3.09e-55

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 173.89  E-value: 3.09e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1780598340  48 QQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDP--EASLTSGGSLPTRRSDE 125
Cdd:COG5249    22 YQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMsfEQIEDDDEIEEGEKDNE 101

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1780598340 126 YRPFVRRLPEFKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGK 203
Cdd:COG5249   102 FRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPFDIGKKKYKS 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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