|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05560 |
PRK05560 |
DNA gyrase subunit A; Validated |
7-842 |
0e+00 |
|
DNA gyrase subunit A; Validated
Pssm-ID: 235502 [Multi-domain] Cd Length: 805 Bit Score: 1603.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 7 EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVY 86
Cdd:PRK05560 4 RIIPVNIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGNTPDKPYKKSARIVGDVMGKYHPHGDSAVY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 87 DTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNL 166
Cdd:PRK05560 84 DALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARMSKIAHELLADIDKETVDFVPNYDGSEQEPTVLPARFPNL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 167 LVNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246
Cdd:PRK05560 164 LVNGSSGIAVGMATNIPPHNLGEVIDACLALIDNPDITIEELMEIIPGPDFPTGGIILGRSGIREAYRTGRGSIVMRAKA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 247 EVEVDakSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQL 326
Cdd:PRK05560 244 EIEEI--KGREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAVPEVVLNNLYKHTQL 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 327 QVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEA 406
Cdd:PRK05560 322 QTSFGINMLALVDGQPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPAEA 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 407 KAGLVAqawdlgnvaamleragddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486
Cdd:PRK05560 402 KEGLME----------------------------------RFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIA 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKG 566
Cdd:PRK05560 448 DLKDILASPERLLEIIKEELLEIKEKFGDPRRTEIIEGEGDIDDEDLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKG 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 567 KSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNV 646
Cdd:PRK05560 528 VSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYL 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 647 FMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKL 726
Cdd:PRK05560 608 FFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 727 AENDSVVSLIIPRGEGA-ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLV 805
Cdd:PRK05560 688 REGDEVVSMDVVREDSQeILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLI 767
|
810 820 830
....*....|....*....|....*....|....*..
gi 1737948057 806 RTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEP 842
Cdd:PRK05560 768 RTRVSEISITGRNTQGVRLIRLDEGDKVVSVARVAEE 804
|
|
| GyrA |
COG0188 |
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair]; |
1-836 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A [Replication, recombination and repair];
Pssm-ID: 439958 [Multi-domain] Cd Length: 804 Bit Score: 1486.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 1 MSDL--AREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 78
Cdd:COG0188 1 MSDPppAERIIPVNLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDKPYKKSARVVGDVMGKYH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 79 PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDV 158
Cdd:COG0188 81 PHGDSAVYDALVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARLAKIAEELLADIDKDTVDFVPNYDGSEQEPTV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 159 MPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRG 238
Cdd:COG0188 161 LPARFPNLLVNGSSGIAVGMATNIPPHNLGEVIDACIALIDNPDATIEELMEYIPGPDFPTGGIIVGREGIREAYETGRG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 239 KVYIRARAEVEvDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLN 318
Cdd:COG0188 241 SIRVRAKAEIE-ELKRGREQIVVTEIPYQVNKARLIEKIAELVKEKKIEGISDVRDESDRDGMRIVIELKRDANPEVVLN 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 398
Cdd:COG0188 320 QLYKHTQLQTSFGINMLALVDGRPRVLNLKEILEAFLDHRREVVTRRTQFELRKAEERAHILEGLLIALDNIDEVIAIIR 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 399 RAPTPAEAKAGLVAqawdlgnvaamleragddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEY 478
Cdd:COG0188 400 ASKDPDEAKEALME----------------------------------RFGLSEIQAEAILDMRLRRLTGLEREKIEDEY 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 479 KELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYE 558
Cdd:COG0188 446 AELLKEIAELEDILASEERLLKIIKEELLEIKKKYGDERRTEIEEAEGEIDIEDLIPDEDVVVTLSHKGYIKRTPLDTYR 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 559 AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVR 638
Cdd:COG0188 526 AQRRGGKGVSGMGTKEEDFVEHLFVASTHDTLLFFTNKGRVYRLKVYELPEGSRTAKGKPIVNLLPLEPGEKITAVLPVK 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 639 EYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTA 718
Cdd:COG0188 606 EFDEDKYLLFATKKGTVKKTPLSDFSNIRKNGIIAINLKEGDELVGVALTDGDDDVLLATSNGKAIRFPESDVRPMGRTA 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 719 TGVRGIKLAENDSVVSLIIPRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMI 798
Cdd:COG0188 686 RGVRGIRLKEGDEVVGMAVVDEEDDLLTVTENGYGKRTPLSEYRLQGRGGKGVITIKLTEKNGKLVGALVVNDDDELMLI 765
|
810 820 830
....*....|....*....|....*....|....*...
gi 1737948057 799 TDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGL 836
Cdd:COG0188 766 TSSGQLIRTPVSDIRVTGRNTQGVRLIRLDEGDKVVSV 803
|
|
| gyrA |
TIGR01063 |
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). ... |
8-841 |
0e+00 |
|
DNA gyrase, A subunit; This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273423 [Multi-domain] Cd Length: 800 Bit Score: 1400.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYD 87
Cdd:TIGR01063 1 IVPVNIEEEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGLTPDKPYKKSARIVGDVMGKYHPHGDSAIYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 88 TIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLL 167
Cdd:TIGR01063 81 TLVRMAQDFSLRYPLVDGQGNFGSIDGDPPAAMRYTEARLTKIAEELLRDIDKETVDFVPNYDGSEQEPTVLPSRFPNLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 168 VNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247
Cdd:TIGR01063 161 VNGSSGIAVGMATNIPPHNLGEIIDALLAYIDNPDISIQELLEVIKGPDFPTGGIILGRSGIRSAYETGRGSIVIRARAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 248 VEVDAKsGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQ 327
Cdd:TIGR01063 241 IEEDSK-GREAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLYKQTQLQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 328 VSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAK 407
Cdd:TIGR01063 320 VSFGINMLALVKGLPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 408 AGLVAQawdlgnvaamleragddaarpewlepefgvrdgkYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487
Cdd:TIGR01063 400 TRLVER----------------------------------FSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIAD 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITAN-SADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKG 566
Cdd:TIGR01063 446 LEDILASEERVLEIIREELEEIKEQFGDPRRTEIVYDeSEDIDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKG 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 567 KSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVNV 646
Cdd:TIGR01063 526 VSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYL 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 647 FMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKL 726
Cdd:TIGR01063 606 FFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTSGEDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 727 AENDSVVSLIIPRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVR 806
Cdd:TIGR01063 686 KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIR 765
|
810 820 830
....*....|....*....|....*....|....*
gi 1737948057 807 TRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAE 841
Cdd:TIGR01063 766 TSVQDVSEQGRNTQGVRLIRLDEDDKLVSVSKVAK 800
|
|
| PRK05561 |
PRK05561 |
DNA topoisomerase 4 subunit A; |
1-771 |
0e+00 |
|
DNA topoisomerase 4 subunit A;
Pssm-ID: 235503 [Multi-domain] Cd Length: 742 Bit Score: 850.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 1 MSDLAREITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 80
Cdd:PRK05561 3 DMSMLEGIEDLPLEEFLEERYLRYAMYVIMDRALPDVRDGLKPVQRRILYAMSELGLTPDAKFKKSARVVGDVLGKYHPH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 81 GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 160
Cdd:PRK05561 83 GDSSIYDAMVRMAQDFSYRYPLVDGQGNFGSIDGDPAAAMRYTEARLSPIAELLLEEIDEGTVDFVPNFDGTLKEPTVLP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 161 TKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPT-AAIINGRRGIEEAYRTGRGK 239
Cdd:PRK05561 163 ARFPNLLLNGATGIAVGMATDIPPHNLREVIDAAIHLIDNPDATLEELMEFVPGPDFPTgGEIITGRDGIRKAYETGRGS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 240 VYIRARAEVEvDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG-MRIVIEVKRDAVG-EVVL 317
Cdd:PRK05561 243 IRVRARWEIE-DLAGGRWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDESDRENpVRIVIEPKSNRVDpEALM 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 318 NNLYSQTQLQVSFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIEL 396
Cdd:PRK05561 322 NHLFATTDLESSYRVNMNAIGlDGRPRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRI 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 397 IRrapTPAEAKAGLVAqawdlgnvaamleragddaarpewlepEFGvrdgkyyLTEQQAQAILDLRLQKLTGLEHEKLLD 476
Cdd:PRK05561 402 IR---ESDEPKANLMA---------------------------RFD-------LSEIQAEAILELRLRRLAKLEEIEIRK 444
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 477 EYKELLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSAD--INIEDLINQEDVVVTLSHQGYVKyqpl 554
Cdd:PRK05561 445 EQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDPRRTPIEEAEEAiaIDEEALIPDEPVTVVLSKKGWVR---- 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 555 tdyeaqRRGGKGKSAA--RIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAsRGArGRPIVNLLPLEADERIT 632
Cdd:PRK05561 521 ------RAKGHSIDASglSFKEGDSLLFAFEARTTDKLLLFTSTGRVYSLPVHELPSA-RGD-GEPLTGLVDLAPGEEIV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 633 AILPvreYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVR 712
Cdd:PRK05561 593 HVLA---FDPDQKLLLASSAGYGFVVTLEDLVARTRAGKAVINLKDGDEVLPPVPVEDDDHLAAITSNGRLLVFPLSELP 669
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737948057 713 AMGRtATGVRGIKL-AENDSVVSLIIPRGEGAILTVTQNGYGKRTAAAEYPT--KSRATQGV 771
Cdd:PRK05561 670 ELGK-GKGVKLINLpKDDDGLVDLRVLNPEDGLVLLTAGKRKLKLKPSELEKyrGKRARRGR 730
|
|
| TOP4c |
cd00187 |
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), ... |
30-507 |
0e+00 |
|
DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Pssm-ID: 238111 [Multi-domain] Cd Length: 445 Bit Score: 718.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 30 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 109
Cdd:cd00187 1 NGRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 110 GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTE 189
Cdd:cd00187 81 GSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLRE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 190 VINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDakSGRETIIVHEIPYQVN 269
Cdd:cd00187 161 VIDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDD--EGRNTIEITELPYQVN 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 270 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH-GQPKIMNLK 348
Cdd:cd00187 239 KAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDPnGRPKKLNLK 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 349 DIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAptpAEAKAGLVAQAWdlgnvaamlerag 428
Cdd:cd00187 319 EILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSS---DEAKKALIEELE------------- 382
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1737948057 429 ddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELE 507
Cdd:cd00187 383 ------------------KLGFSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELD 443
|
|
| TOP4c |
smart00434 |
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC |
11-499 |
0e+00 |
|
DNA Topoisomerase IV; Bacterial DNA topoisomerase IV, GyrA, ParC
Pssm-ID: 214660 [Multi-domain] Cd Length: 444 Bit Score: 661.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 11 VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIV 90
Cdd:smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDTIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 91 RMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 169
Cdd:smart00434 81 RMAQDFSNNYPLLDGQGNFGSRlDGDDAAAMRYTETRLSPLARLLLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 170 GASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINgrrgieeayrtGRGKVYIRARAEVE 249
Cdd:smart00434 161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPDASIDELMMIPWGPDFPTGGEIV-----------GPGKYVVRGKIEIE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 250 vdaksGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDES-DKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 328
Cdd:smart00434 230 -----DDNTIVITELPYQVNTADLIEKIAELVKDKKIEGIIDVRDEShDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQT 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 329 SFGINMVALH-HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKAR-DRAHILEALAVALANIDPIIELIRRAPTPA-E 405
Cdd:smart00434 305 TFSINMLALFdNGRPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEaERLHILEGLFIALSIIDEIIVLIRSSKDLAkE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 406 AKAGLVAqawdlgnvaamleragddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485
Cdd:smart00434 385 AKEKLME----------------------------------RFELSEIQADAILDMRLRRLTKLEVEKLEKELKELEKEI 430
|
490
....*....|....
gi 1737948057 486 AELLHILGSADRLM 499
Cdd:smart00434 431 EDLEKILASEEWLN 444
|
|
| PRK13979 |
PRK13979 |
DNA topoisomerase IV subunit A; Provisional |
8-802 |
0e+00 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 237576 [Multi-domain] Cd Length: 957 Bit Score: 644.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYD 87
Cdd:PRK13979 13 IIKIPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 88 TIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLL 167
Cdd:PRK13979 93 AMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRDIDKDVVNMVDNYSDSEKEPEVLPARYPNLL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 168 VNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247
Cdd:PRK13979 173 VNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKVTLRAKTK 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 248 VEvDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKR----VEGISALRDESDKDGMRIVIEVKRDA---VGEVVLNNL 320
Cdd:PRK13979 253 IE-KLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKhskaLENISDIRDESDRNGIRAVIEFKKSAdedVAEKVLKYL 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 321 YSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRA 400
Cdd:PRK13979 332 YKKTDLQCNISFNMVALADGKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSS 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 401 PTPAEAKAGLVAqawdlgnvaamleragddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 480
Cdd:PRK13979 412 KSKKDASENLIE----------------------------------KFGFTDEQAEAILELMLYRLTGLEIVAFEKEYKE 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 481 LLEQIAELLHILGSADRLMEVIREELELIRDQFGDERRTEITA--NSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYe 558
Cdd:PRK13979 458 LEKLIKKLTKILSSEKELLKVIKKELKEVKEKYGDERRTSIIEddEKAKIDVEELIVVEDVVITLSNEGFIKRIPLKSY- 536
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 559 aqRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPE---ASRGARGRPIVNLLPLEaDERITAIL 635
Cdd:PRK13979 537 --NRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEfkwKEKGERLDEIIKGIDLE-SEKIIEAY 613
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 636 PVREYEEGVNVFMATASGTVKKTALTEFSRPRSAgIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKV-VRF--KEDAVR 712
Cdd:PRK13979 614 SIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTK-LMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKgLSFtvEEPELE 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 713 AMGRTATGVRGIKLAENDSVVSL-IIPRGEGAILTVTQNGYGKrtaaaeyptksratqgvisIKVTERNGSVVGAVQVDD 791
Cdd:PRK13979 693 PVDRNIIGYQLFDLLPNDSIKKVdFCDNYEYKEFYVNINKKGI-------------------IKISDKDNKSSISVFTNS 753
|
810
....*....|.
gi 1737948057 792 CDQIMMITDAG 802
Cdd:PRK13979 754 SKNLLIFSDEG 764
|
|
| parC_Gpos |
TIGR01061 |
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II ... |
13-779 |
0e+00 |
|
DNA topoisomerase IV, A subunit, Gram-positive; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273422 [Multi-domain] Cd Length: 738 Bit Score: 629.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 13 IEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRM 92
Cdd:TIGR01061 6 LEEVFGESFGKYAKYIIQDRALPDIRDGLKPVQRRILYAMFQDGNTFDKPYKKSARTVGEIMGKYHPHGDSSIYDAMVRM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 93 AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGAS 172
Cdd:TIGR01061 86 SQDWKNNWTLVEMHGNNGSIDGDNAAAMRYTEARLSLIASELLKDIDKKTVSFIPNFDDSEKEPTVLPALFPNLLINGAT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 173 GIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDa 252
Cdd:TIGR01061 166 GIAAGYATNIPPHNLNEVIDALIYRIDHPNCSVDKLMEIVKGPDFPTGGIIQGEDGISKAYETGKGKFIIRAKIEIEVN- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 253 KSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI 332
Cdd:TIGR01061 245 KNGLNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFLFKHTDLQINYNF 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 333 NMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVA 412
Cdd:TIGR01061 325 NMVAIANRTPIQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLID 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 413 qawdlgnvaamleragddaarpewlepefgvrdgKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHIL 492
Cdd:TIGR01061 405 ----------------------------------NFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQII 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 493 GSADRLMEVIREELELIRDQFGDERRTEI--TANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKsaa 570
Cdd:TIGR01061 451 ASEKARNKLLKKQLEEYKKQFAQQRRSQIedFINQIKINESELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGS--- 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 571 riKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYE-EGVNVFMA 649
Cdd:TIGR01061 528 --KDDDILFAQTIANTTDQILIFTSLGNIINIPVHKLADIRWKDLGEHLSNKITFDENETIVFVGTMNEFDvDQPILVLA 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 650 TASGTVKKTALTEFS-RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAE 728
Cdd:TIGR01061 606 SKLGMVKRIELTELNiKRNSKATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKGMKLKE 685
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1737948057 729 NDSVVSLIIPRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTER 779
Cdd:TIGR01061 686 DDQVKSGVIFEANESLVLLTQRGSVKRLSISELVVTSRAATGKKLLPLKKK 736
|
|
| DNA_topoisoIV |
pfam00521 |
DNA gyrase/topoisomerase IV, subunit A; |
32-507 |
0e+00 |
|
DNA gyrase/topoisomerase IV, subunit A;
Pssm-ID: 459843 [Multi-domain] Cd Length: 432 Bit Score: 620.72 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 32 RALPDVRDGLKPVHRRVLYAMNVLGNDwNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 111
Cdd:pfam00521 1 RAIPDVRDGLKPVQRRILYAMFELLNL-DKPYKKVARLVGDVMGKYHPHGDASLYDAIVRMAQDFVGNIPLLDGQGNFGS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 112 -IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEV 190
Cdd:pfam00521 80 rIDGDKDAAMRYTETRLSKIARELFPDIDDDTVDYVPNYDGTEVEPTVLPPIIPNLLVNGAEGIAVGMATNIPPHNLREI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 191 INGCLAYVDDEDISIegLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVdaksgRETIIVHEIPYQVNK 270
Cdd:pfam00521 160 IDALIALLDGPEATL--LMKYIMGPDFPTGGGIIGKGGIKEAYKTGRGKITVRAKVEIED-----RKTIVITELPYGVWT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 271 ARLIEKIAELVKEKRVEGISALRDESDKdGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI 350
Cdd:pfam00521 233 SDLIEKIEELVKNGKIKGISDIRDESDR-GVRIVIELKRGADPEVVLNDLYKKTKLQTSFSTNNLVLFDGGPKYLGLKEI 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 351 IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQawdlgnvaamleragdd 430
Cdd:pfam00521 312 LKEFLDHRLEVYERRKEYLLEKLEERLHILEGLLIALNNIDFVIEIIRGSIDRKKAKKNLIEE----------------- 374
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1737948057 431 aarpewlepefgvrdgkyyLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELE 507
Cdd:pfam00521 375 -------------------LSEIQADYLLDMRLRRLTKEEVDKLLEEIDELEKEIAELEKLLASEKKLNDLWIEELD 432
|
|
| parC_Gneg |
TIGR01062 |
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II ... |
8-716 |
1.50e-165 |
|
DNA topoisomerase IV, A subunit, proteobacterial; Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 130134 [Multi-domain] Cd Length: 735 Bit Score: 499.44 E-value: 1.50e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYD 87
Cdd:TIGR01062 1 IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSARTVGDVLGKYHPHGDSACYE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 88 TIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNL 166
Cdd:TIGR01062 81 AMVLMAQPFSYRYPLVDGQGNWGAPDDpKSFAAMRYTESRLSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 167 LVNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAA-IINGRRGIEEAYRTGRGKVYIRAR 245
Cdd:TIGR01062 161 LLNGTTGIAVGMATDIPPHNLHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAeIIDKAEEIRKIYETGRGSFRMRAR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 246 AEVEVDAksgretIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESD-KDGMRIVIEVKRDAVG-EVVLNNLYSQ 323
Cdd:TIGR01062 241 WKKEDGQ------IVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDhENPIRVVIVPRSNRVDpDIVMEHLFAT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 324 TQLQVSFGINM--VALHHgQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAP 401
Cdd:TIGR01062 315 TDLEKSYRLNMnmIGLDN-VPAVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREED 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 402 TPAeakaglvaqawdlgnvAAMLERAGddaarpewlepefgvrdgkyyLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 481
Cdd:TIGR01062 394 EPK----------------TILMERFK---------------------LSAIQAEAILNLRLRHLAKLEEHAIIDEQSEL 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 482 LEQIAELLHILGSADRLMEVIREELELIRDQFGDERRT-----EITANSADInieDLINQEDVVVTLSHQGYVKYQPLTD 556
Cdd:TIGR01062 437 EKERAILEKILKSERELNQLVKKEIQADATKYGLARRSsleerEEAKQVSEI---DMIPKEPVTIILSKMGWVRSAKGHD 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 557 YEAqrrggkgkSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAsRGaRGRPIVNLLPLEADERITAILP 636
Cdd:TIGR01062 514 IDL--------STLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLPSA-RG-QGEPLTGKLLLPIGATITNILM 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 637 VREYEEgvnVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIG-VDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715
Cdd:TIGR01062 584 YSPNQL---LLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVIApLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660
|
.
gi 1737948057 716 R 716
Cdd:TIGR01062 661 K 661
|
|
| PRK09631 |
PRK09631 |
DNA topoisomerase IV subunit A; Provisional |
10-383 |
6.76e-69 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 236598 [Multi-domain] Cd Length: 635 Bit Score: 240.77 E-value: 6.76e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 10 PVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLgNDWNkaYKKSARVVGDVIgKYHPHGDSAVYDTI 89
Cdd:PRK09631 1 MMDIKTLFKDNFLQYASYVIKDRAIPDVIDGLKPVQRRILHSLFEM-HDGK--FHKVANVVGNTM-KYHPHGDASIYEAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 90 VRMAQpfslRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMadLEKETVDFVDNYDGTERIPDVMPTKIPNLLV 168
Cdd:PRK09631 77 VNLAN----KDLFIDKQGNFGNLfTGDPASAARYIECRLTPLAKEVL--YNKEITEYEPSYDGRNNEPLCLPAKIPVILI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 169 NGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEglmahipgPDFPTAAIINgrrgiEEAYRTGRGKVYIRARAEv 248
Cdd:PRK09631 151 QGAEGIAVGMATKILPHNFNEILQAVKSELLGESFALY--------PDFPTGGIVD-----VSEYADGNGKVLVRAKIE- 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 249 EVDAKsgreTIIVHEIPYQVNKARLIEKIAELVKEKRVEgISALRDESdKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQV 328
Cdd:PRK09631 217 TKDEK----TIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYT-AENVEIEIKLPRGVYASEVIEALYAYTDCEV 290
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1737948057 329 SFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRtiFELrkarDRAHILEAL 383
Cdd:PRK09631 291 SISVNLLVIKDRYPVIYTVTDIIKFHAEHLQKVLKME--LEL----ERAKLLEKI 339
|
|
| PRK12758 |
PRK12758 |
DNA gyrase/topoisomerase IV subunit A; |
18-329 |
4.24e-54 |
|
DNA gyrase/topoisomerase IV subunit A;
Pssm-ID: 237192 [Multi-domain] Cd Length: 869 Bit Score: 202.54 E-value: 4.24e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 18 KNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDwnkAYKKSARVVGDVIgKYHPHGDSAVYDTIVRMAQpfs 97
Cdd:PRK12758 28 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKEMDDG---RYNKVANVVGHTM-QYHPHGDASIGDALVQLGQ--- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 98 lRYMLVDGQGNFGSI-DGDSAAAMRYTEIRLAKIAHELMadLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAV 176
Cdd:PRK12758 101 -KDLLIDTQGNWGNIlTGDGAAAPRYIEARLSKFALEVV--FNPKTTEWQLSYDGRKKEPVTLPVKFPLLLAQGAEGIAV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 177 GMATNIPPHNLTEVINGCLAYVDDEDISIEglmahipgPDFPTAAIIN------GRRGieeayrtgrGKVYIRARAEvEV 250
Cdd:PRK12758 178 GLSTKILPHNFNELIDASIAYLKGKEFKLY--------PDFPTGGIIDvsnyndGERG---------GRVRVRAKIE-KL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 251 DAKsgreTIIVHEIPYQVNKARLIEKIAEL-----VKEKRVEGISAlrdesdkDGMRIVIEVKRDAVGEVVLNNLYSQTQ 325
Cdd:PRK12758 240 DKK----TLVITEIPYGTTTSSLIDSILKAndkgkIKIKKVEDNTA-------ADVEILVHLAPGVSPDKTIDALYAFTD 308
|
....
gi 1737948057 326 LQVS 329
Cdd:PRK12758 309 CEVS 312
|
|
| PRK09630 |
PRK09630 |
DNA topoisomerase IV subunit A; Provisional |
12-351 |
1.77e-46 |
|
DNA topoisomerase IV subunit A; Provisional
Pssm-ID: 170022 Cd Length: 479 Bit Score: 173.54 E-value: 1.77e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 12 NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLgnDWNKAYKksarvVGDVIGK---YHPHGDSAVYDT 88
Cdd:PRK09630 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRM--DDGKMHK-----VANIAGRtmaLHPHGDAPIVEA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 89 IVRMAQpfslRYMLVDGQGNFGS-IDGDSAAAMRYTEIRLAKIAHELMadLEKETVDFVDNYDGTERIPDVMPTKIPNLL 167
Cdd:PRK09630 76 LVVLAN----KGYLIDTQGNFGNpLTGDPHAAARYIEARLSPLAKEVL--FNTDLMTFHDSYDGREKEPDILPAKLPLLL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 168 VNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISIEglmahipgPDFPTAAIINGrrgieEAYRTGRGKVYIRARAE 247
Cdd:PRK09630 150 LHGVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTLL--------PDFPSGGTMDA-----SEYQDGLGSITLRASID 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 248 VeVDAKsgreTIIVHEIPYQVNKARLIEKIAELVKEKRVEgISALRDESdKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQ 327
Cdd:PRK09630 217 I-INDK----TLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFS-TDLPHIEIKLPKGIYAKDLLRPLFTHTECQ 289
|
330 340
....*....|....*....|....
gi 1737948057 328 VSFGINMVALHHGQPKIMNLKDII 351
Cdd:PRK09630 290 VILTSRPTAIYQNKPVETSISEIL 313
|
|
| 52 |
PHA02592 |
DNA topisomerase II medium subunit; Provisional |
12-390 |
6.13e-43 |
|
DNA topisomerase II medium subunit; Provisional
Pssm-ID: 222896 [Multi-domain] Cd Length: 439 Bit Score: 162.15 E-value: 6.13e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 12 NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV--IGkYHpHGDSAVYDTI 89
Cdd:PHA02592 7 SLKSIVNNEALEYAMYTVEERAIPNLIDGLKPVQRFVIHRALEYAKGNKEKFDKVAAIAGGVadLG-YH-HGETSAQDAG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 90 VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLakiaHELMADLEKETvDFVDNYDGTERIPDV--MPTkIPNLL 167
Cdd:PHA02592 85 ALMANTWNNNIPLLDGQGNFGSRLVQKAAAARYIFARV----HDNFRKIYKDE-DLAPVHEDPEHIPPAfyLPI-IPMVL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 168 VNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDISieglmahIPGPDFPtaaiinGRRGieEAYRTGRGKVYIRARAE 247
Cdd:PHA02592 159 LNGVSGIATGYATNILPHSPKSVIKAVLAALNGKDIT-------EPKVQFP------EFKG--EVVEIEPGSYEIRGTYE 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 248 VevdakSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGIsalrDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQ 327
Cdd:PHA02592 224 L-----NGKTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSY----DDCTEDGFRFKVTLKREENEEATHEKIMKDFGLI 294
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1737948057 328 VSFGINMVALH-HGQPKIM-NLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANI 390
Cdd:PHA02592 295 ERVSQNITVINeNGKLKVYeNAEDLIRDFVEIRKTYVQKRIQYEIKETEEAFDLALAKAEFIKRV 359
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
32-523 |
3.16e-25 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 113.22 E-value: 3.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 32 RALPDVRDGLKPVHRRVLYAMnvlgndWNKAYKKSARVV---GDVIGK--YHpHGDSAVYDTIVRMAQPF----SLRYML 102
Cdd:PTZ00108 680 RSIPSLVDGLKPGQRKILFAC------FKRNLKNEIKVAqlsGYVSEHsaYH-HGEQSLQQTIVGMAQNFvgsnNINLLY 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 103 VDGQgnFGS--IDGDSAAAMRYTEIRLAKIA----HElmADleketvDFVDNY---DGTERIPD-VMPTkIPNLLVNGAS 172
Cdd:PTZ00108 753 PCGQ--FGSrlQGGKDHAAARYIFTKLSKITryifPE--ED------DPILDYledDGQSVEPFyYVPI-IPMVLVNGAE 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 173 GIAVGMATNIPPHNLTEVingclayvddedisIEGLMAHIPGPDFPTaaiingrrgIEEAYRTGRGKvyIRARAEVEVDA 252
Cdd:PTZ00108 822 GIGTGFSTSIPNYNPLDI--------------IDNLRRRLNGEEVRP---------LVPWYRGFKGT--IERNPKGKFIS 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 253 KS-----GRETIIVHEIPYQVNKARLIEKIAELVKEKRvEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQ 327
Cdd:PTZ00108 877 KGiyekvPDGTVEITELPIGKWTEDYKEFLESETLKEK-DVIVDYRDYSTANTVHFTVKLNDGVLEQWEEEGIEKVFKLK 955
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 328 VSFGI-NMVALHHGQ--PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEA-----LAVALANIDpiielIRR 399
Cdd:PTZ00108 956 STISTtNMVLFDENGkiKKYSDALDILKEFYLVRLDLYKKRKEYLLGKLERELARLSNkvrfiKHVINGELV-----ITN 1030
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 400 APtpaeaKAGLVAQAWDLG---------------NVAAMLERAGDDAARPEWLEPEFGVRDGKYYLteqqaqaiLDLRLQ 464
Cdd:PTZ00108 1031 AK-----KKDLVKELKKLGyvrfkdiikkksekiTAEEEEGAEEDDEADDEDDEEELGAAVSYDYL--------LSMPIW 1097
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1737948057 465 KLTgLEH-EKLLDEYKELLEQIAELLHIlgsadrlmEVI---REELELIRDQFGDERRTEITA 523
Cdd:PTZ00108 1098 SLT-KEKvEKLNAELEKKEKELEKLKNT--------TPKdmwLEDLDKFEEALEEQEEVEEKE 1151
|
|
| PLN03128 |
PLN03128 |
DNA topoisomerase 2; Provisional |
32-483 |
1.17e-24 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215593 [Multi-domain] Cd Length: 1135 Bit Score: 110.95 E-value: 1.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 32 RALPDVRDGLKPVHRRVLYAmnVLGNDWnKAYKKSARVVGDVI--GKYHpHGDSAVYDTIVRMAQPF--SLRYMLVDGQG 107
Cdd:PLN03128 673 RSIPSMVDGLKPSQRKVLFA--CFKRNL-KSEIKVAQLSGYVAehSAYH-HGEASLASTIIGMAQDFvgSNNINLLTPSG 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 108 NFGS--IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNyDGTERIPD-VMPTkIPNLLVNGASGIAVGMATNIPP 184
Cdd:PLN03128 749 QFGTrlQGGKDAASARYIFTRLSPITRALFPKDDDVLLNYLNE-DGQSIEPEwYCPI-IPMVLVNGSEGIGTGWSTFIPN 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 185 HNLTEVINGCLAYVDDEDisieglmahiPGPDFPTAAIINGRrgIEEAYRTGRGKVYIRARAEvevdaKSGRETIIVHEI 264
Cdd:PLN03128 827 YNPRDIIANIRRLLRGEE----------LEPMHPWYRGFKGT--ITEVSTSRSGSYTVTGIIE-----QIGDTTIRITEL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 265 PYQV---NKARLIEKIAELVKEKRVEgISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGI-NMVALHH- 339
Cdd:PLN03128 890 PVRKwtqDYKEFLEALLTGTKKKEPE-IKDFKENHTDTTVHFTVTLSEEKMARALAEGLEKKFKLSTTISTsNMHLFDKd 968
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 340 GQPKIMNL-KDIIAAFVRHR-------REVVTRRTIFELRKARDRAH-ILEALAVAL-------ANIDPIIELIRRAPTP 403
Cdd:PLN03128 969 GKIKKYDSpEDILEEFFHLRldlyvkrKEVLLENLEYELKKLDNKARfILAVVKGEIvvnnrkrAELLAELEEKGFDKFP 1048
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 404 AEAKAGLVAQAWDLGNVAAMLERAGDDAARPEWlepEFGVRDGKYYLTEQQAQAILDLR---------LQKLTGLEH-EK 473
Cdd:PLN03128 1049 KTAKISETNVVGDRDGEASEEEEASDNELAKSY---DYLLGMPISSLTLEKVDELRAERakketeveeLKKTTPEDLwRK 1125
|
490
....*....|
gi 1737948057 474 LLDEYKELLE 483
Cdd:PLN03128 1126 DLDAFEEALD 1135
|
|
| PLN03237 |
PLN03237 |
DNA topoisomerase 2; Provisional |
32-201 |
3.48e-14 |
|
DNA topoisomerase 2; Provisional
Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 77.21 E-value: 3.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 32 RALPDVRDGLKPVHRRVLYAmnvlgnDWNKAYKKSARV---VGDV--IGKYHpHGDSAVYDTIVRMAQPF----SLRYML 102
Cdd:PLN03237 698 RSIPSMVDGLKPGQRKILFC------SFKRNFVKEAKVaqlSGYVseHSAYH-HGEQSLASTIIGMAQDFvgsnNINLLL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737948057 103 VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNyDGTERIPD-VMPTkIPNLLVNGASGIAVGMATN 181
Cdd:PLN03237 771 PNGQFGTRLQGGKDHASARYIFTRLSPITRFLFPKDDDILLDYLNE-DGQSIEPTwYMPI-IPTVLVNGAEGIGTGWSTF 848
|
170 180
....*....|....*....|
gi 1737948057 182 IPPHNLTEVINGCLAYVDDE 201
Cdd:PLN03237 849 IPNYNPRDIVANIRRLLNGE 868
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
692-737 |
6.35e-13 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 63.66 E-value: 6.35e-13
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1737948057 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLII 737
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGINLKEGDKVVSVLV 46
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
793-839 |
9.27e-11 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 57.50 E-value: 9.27e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737948057 793 DQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV 839
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGINLKEGDKVVSVLVV 47
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
744-790 |
5.48e-09 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 52.49 E-value: 5.48e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737948057 744 ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTErNGSVVGAVQVD 790
Cdd:pfam03989 3 LLLITSKGYVKRTPLSEIREQGRGAKGVKGINLKE-GDKVVSVLVVN 48
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
588-638 |
7.07e-09 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 52.10 E-value: 7.07e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1737948057 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNllpLEADERITAILPVR 638
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGIN---LKEGDKVVSVLVVN 48
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
538-585 |
1.01e-08 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 51.72 E-value: 1.01e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1737948057 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585
Cdd:pfam03989 1 DELLLITSKGYVKRTPLSEIREQGRGAKGVKGINLKEGDKVVSVLVVN 48
|
|
| DNA_gyraseA_C |
pfam03989 |
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the ... |
645-689 |
4.57e-06 |
|
DNA gyrase C-terminal domain, beta-propeller; This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex.
Pssm-ID: 427633 [Multi-domain] Cd Length: 48 Bit Score: 44.40 E-value: 4.57e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737948057 645 NVFMATASGTVKKTALTEFSRPR--SAGIIAVNLNEGDELIGVDLTS 689
Cdd:pfam03989 2 ELLLITSKGYVKRTPLSEIREQGrgAKGVKGINLKEGDKVVSVLVVN 48
|
|
|