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Conserved domains on  [gi|1613410164|emb|VHA75012|]
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lipoprotein [Streptococcus pyogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PenP super family cl28588
Beta-lactamase class A [Defense mechanisms];
21-79 8.94e-08

Beta-lactamase class A [Defense mechanisms];


The actual alignment was detected with superfamily member COG2367:

Pssm-ID: 441934 [Multi-domain]  Cd Length: 276  Bit Score: 47.20  E-value: 8.94e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1613410164  21 SLVNTVKAYLKEFGigeSQIAFSYKDLNSGRTAAMNDHQPMIAGSTYKLPLNMLVVDKA 79
Cdd:COG2367    19 ALEAELAALEAALG---GRVGVYVLDLDTGETVGINADERFPAASTFKLPVLAAVLRQV 74
 
Name Accession Description Interval E-value
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
21-79 8.94e-08

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 441934 [Multi-domain]  Cd Length: 276  Bit Score: 47.20  E-value: 8.94e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1613410164  21 SLVNTVKAYLKEFGigeSQIAFSYKDLNSGRTAAMNDHQPMIAGSTYKLPLNMLVVDKA 79
Cdd:COG2367    19 ALEAELAALEAALG---GRVGVYVLDLDTGETVGINADERFPAASTFKLPVLAAVLRQV 74
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is ...
 42-80 1.84e-04

Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 463854 [Multi-domain]  Cd Length: 215  Bit Score: 37.64  E-value: 1.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1613410164  42 FSYKDLNSGRTAAMNDHQPMIAGSTYKLPLNMLVVDKAN 80
Cdd:pfam13354   2 IYVRDLDTGEELGINGDRSFPAASTIKVPILLAVLEQVD 40
 
Name Accession Description Interval E-value
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
21-79 8.94e-08

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 441934 [Multi-domain]  Cd Length: 276  Bit Score: 47.20  E-value: 8.94e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1613410164  21 SLVNTVKAYLKEFGigeSQIAFSYKDLNSGRTAAMNDHQPMIAGSTYKLPLNMLVVDKA 79
Cdd:COG2367    19 ALEAELAALEAALG---GRVGVYVLDLDTGETVGINADERFPAASTFKLPVLAAVLRQV 74
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is ...
 42-80 1.84e-04

Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 463854 [Multi-domain]  Cd Length: 215  Bit Score: 37.64  E-value: 1.84e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1613410164  42 FSYKDLNSGRTAAMNDHQPMIAGSTYKLPLNMLVVDKAN 80
Cdd:pfam13354   2 IYVRDLDTGEELGINGDRSFPAASTIKVPILLAVLEQVD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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