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Conserved domains on  [gi|1577444725|emb|VFB05593|]
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Uncharacterised protein [Corynebacterium striatum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DEAD-like_helicase_N super family cl28899
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ...
 25-103 6.01e-04

N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.


The actual alignment was detected with superfamily member PRK01297:

Pssm-ID: 475120 [Multi-domain]  Cd Length: 475  Bit Score: 38.74  E-value: 6.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1577444725  25 EPLADAPGNPFADAAKPQPAQSFQPPPVDEPSEVVPAQTKTNEPEPAEADGKVYPFSWWKagLSAFFL-----LVGFNDF 99
Cdd:PRK01297   15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWK--LEDFVVepqegKTRFHDF 92


                  ....
gi 1577444725 100 SADP 103
Cdd:PRK01297   93 NLAP 96
 
Name Accession Description Interval E-value
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 25-103 6.01e-04

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 38.74  E-value: 6.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1577444725  25 EPLADAPGNPFADAAKPQPAQSFQPPPVDEPSEVVPAQTKTNEPEPAEADGKVYPFSWWKagLSAFFL-----LVGFNDF 99
Cdd:PRK01297   15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWK--LEDFVVepqegKTRFHDF 92


                  ....
gi 1577444725 100 SADP 103
Cdd:PRK01297   93 NLAP 96
 
Name Accession Description Interval E-value
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 25-103 6.01e-04

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 38.74  E-value: 6.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1577444725  25 EPLADAPGNPFADAAKPQPAQSFQPPPVDEPSEVVPAQTKTNEPEPAEADGKVYPFSWWKagLSAFFL-----LVGFNDF 99
Cdd:PRK01297   15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWK--LEDFVVepqegKTRFHDF 92


                  ....
gi 1577444725 100 SADP 103
Cdd:PRK01297   93 NLAP 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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