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Conserved domains on  [gi|1539694472|emb|VED58660|]
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bacteriophage CII family protein (plasmid) [Klebsiella aerogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_CII super family cl05027
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 4-60 9.27e-09

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


The actual alignment was detected with superfamily member pfam05269:

Pssm-ID: 398780  Cd Length: 79  Bit Score: 46.91  E-value: 9.27e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1539694472  4 STTRNkvEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAIL 60
Cdd:pfam05269  1 ASTRR--EADRIESDLLNNIATLGQRKLAKAIGCHESQISRWKTDWIPKASMLLAVL 55
 
Name Accession Description Interval E-value
Phage_CII pfam05269
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 4-60 9.27e-09

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


Pssm-ID: 398780  Cd Length: 79  Bit Score: 46.91  E-value: 9.27e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1539694472  4 STTRNkvEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAIL 60
Cdd:pfam05269  1 ASTRR--EADRIESDLLNNIATLGQRKLAKAIGCHESQISRWKTDWIPKASMLLAVL 55
 
Name Accession Description Interval E-value
Phage_CII pfam05269
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 4-60 9.27e-09

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


Pssm-ID: 398780  Cd Length: 79  Bit Score: 46.91  E-value: 9.27e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1539694472  4 STTRNkvEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAIL 60
Cdd:pfam05269  1 ASTRR--EADRIESDLLNNIATLGQRKLAKAIGCHESQISRWKTDWIPKASMLLAVL 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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