NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2321362384|gb|UYP77437|]
View 

TfoX/Sxy family protein [Xanthomonas campestris pv. campestris]

Protein Classification

TfoX/Sxy family protein( domain architecture ID 10523303)

TfoX family protein similar to the C-terminal domains of Escherichia coli competence activator Sxy and Haemophilus influenzae DNA transformation protein TfoX

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TfoX_C pfam04994
TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by ...
 5-78 2.07e-31

TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Swiss:Q9JZR1. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.


:

Pssm-ID: 461512 [Multi-domain]  Cd Length: 77  Bit Score: 106.49  E-value: 2.07e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2321362384   5 RLRNIGPKSAAWLRQVGLRTQQDLQAVGAVGAFVKVRRAGFKPSLNLLYSLEGALADCHWQEVPEARRHALLAE 78
Cdd:pfam04994   4 DLPNLGLKLERMLKKAGIKTVADLRELGAVEAYLRLKQSGSSVSLNLLWALEGALQGVHWNVLPEERKEELLAQ 77
 
Name Accession Description Interval E-value
TfoX_C pfam04994
TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by ...
 5-78 2.07e-31

TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Swiss:Q9JZR1. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.


Pssm-ID: 461512 [Multi-domain]  Cd Length: 77  Bit Score: 106.49  E-value: 2.07e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2321362384   5 RLRNIGPKSAAWLRQVGLRTQQDLQAVGAVGAFVKVRRAGFKPSLNLLYSLEGALADCHWQEVPEARRHALLAE 78
Cdd:pfam04994   4 DLPNLGLKLERMLKKAGIKTVADLRELGAVEAYLRLKQSGSSVSLNLLWALEGALQGVHWNVLPEERKEELLAQ 77
 
Name Accession Description Interval E-value
TfoX_C pfam04994
TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by ...
 5-78 2.07e-31

TfoX C-terminal domain; TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Swiss:Q9JZR1. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.


Pssm-ID: 461512 [Multi-domain]  Cd Length: 77  Bit Score: 106.49  E-value: 2.07e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2321362384   5 RLRNIGPKSAAWLRQVGLRTQQDLQAVGAVGAFVKVRRAGFKPSLNLLYSLEGALADCHWQEVPEARRHALLAE 78
Cdd:pfam04994   4 DLPNLGLKLERMLKKAGIKTVADLRELGAVEAYLRLKQSGSSVSLNLLWALEGALQGVHWNVLPEERKEELLAQ 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH