NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2294271565|gb|UVZ01254|]
View 

NADH dehydrogenase subunit 2, partial (mitochondrion) [Schiffornis turdina]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.45e-142

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 6.45e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   1 AKLISTVSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  81 DITQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAAL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 241 MLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPM 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|
gi 2294271565 321 TSTLTSLSIMLLPLSPMLFT 340
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILT 344
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.45e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 6.45e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   1 AKLISTVSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  81 DITQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAAL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 241 MLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPM 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|
gi 2294271565 321 TSTLTSLSIMLLPLSPMLFT 340
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILT 344
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 8.78e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.78e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  19 SSHWMMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPT------LLSMMAIVSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIIL----IHNPKLTLITFYLYTLTTTAIFLTLNS-----TNTLMLTTMMTAWS 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2294271565 232 KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-275 1.30e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.18  E-value: 1.30e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  10 ITGTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLF-SSMTNAwSTGQWDITQLTY 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMS------------CILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKL----PPITLLFLTSPSLNPTLLS 151
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 152 MMAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKL----TLITFYLYTLTTTAIFLTLNS-TNTLML 223
Cdd:COG1007   271 LLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLlSRKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2294271565 224 TTMMTAWS----KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIA 275
Cdd:COG1007   351 AEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLA 406
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 8.90e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 8.90e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  10 ITGTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLT-- 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 ----------YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLP---PITLLFLTSP-SLNPTLLSM 152
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 153 MAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWMII-------ILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLM 222
Cdd:TIGR01770 272 LAIIAFLsmlIGNFGALAQKKVKRLLAYSSISHVGYILIgllagtlEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2294271565 223 LTTM--MTAWSKT-PSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 IEYIsdFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-340 6.45e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 6.45e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   1 AKLISTVSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  81 DITQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAAL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 241 MLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPM 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|
gi 2294271565 321 TSTLTSLSIMLLPLSPMLFT 340
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILT 344
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 8-340 3.64e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 344.87  E-value: 3.64e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   8 SLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTY 87
Cdd:MTH00135   12 SLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSH 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSlNPTLLSMMAIVSAALGGWMGLN 167
Cdd:MTH00135   92 PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLN 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLSL 247
Cdd:MTH00135  171 QTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 248 AGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPMT-STLTS 326
Cdd:MTH00135  251 GGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPlAISTT 330

                         330
                  ....*....|....
gi 2294271565 327 LSIMLLPLSPMLFT 340
Cdd:MTH00135  331 ATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 8-340 6.02e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 339.20  E-value: 6.02e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   8 SLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTY 87
Cdd:MTH00070   12 SLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQT 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGGWMGLN 167
Cdd:MTH00070   92 PLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLSL 247
Cdd:MTH00070  172 QTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 248 AGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPMTSTLTSL 327
Cdd:MTH00070  252 GGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIIL 331

                         330
                  ....*....|...
gi 2294271565 328 SIMLLPLSPMLFT 340
Cdd:MTH00070  332 SLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-340 1.03e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 300.61  E-value: 1.03e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   3 LISTVSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDI 82
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  83 TQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGG 162
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 163 WMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALML 242
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 243 TLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATI-MLPPNSTSQMKQWQTYKPINPMT 321
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtMFPSTNNMKMKWQFENTKPMTLL 326

                         330
                  ....*....|....*....
gi 2294271565 322 STLTSLSIMLLPLSPMLFT 340
Cdd:MTH00105  327 PTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 7-340 2.60e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 261.06  E-value: 2.60e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   7 VSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLT 86
Cdd:MTH00200   11 LSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEML 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGGWMGL 166
Cdd:MTH00200   91 GPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 167 NQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLS 246
Cdd:MTH00200  171 NQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 247 LAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPMTSTLTS 326
Cdd:MTH00200  251 LGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLL 330

                         330
                  ....*....|....
gi 2294271565 327 LSIMLLPLSPMLFT 340
Cdd:MTH00200  331 LSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-332 2.92e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 232.90  E-value: 2.92e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   7 VSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLT 86
Cdd:MTH00041   11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGGWMGL 166
Cdd:MTH00041   91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 167 NQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLS 246
Cdd:MTH00041  171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 247 LAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKQWQTYKPINPMTSTLTS 326
Cdd:MTH00041  251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330


                  ....*.
gi 2294271565 327 LSIMLL 332
Cdd:MTH00041  331 LSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-339 1.09e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 176.55  E-value: 1.09e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   2 KLISTVSLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM--- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  82 itqLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTspsLNPTLLSMMAIVSAALG 161
Cdd:MTH00160   84 ---LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 162 GWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALM 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 242 LTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKqwQTYKPINPMT 321
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK--KKKNKFSLIL 315

                         330
                  ....*....|....*...
gi 2294271565 322 STLTSLSIMLLPLSPMLF 339
Cdd:MTH00160  316 NFLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 9-268 4.81e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.28  E-value: 4.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   9 LITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITqltyp 88
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  89 mscILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLL--FLTSPSLNPTLLsMMAIVSAALGGWMGL 166
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsnFLDLYWLAYLLC-VISVLSALVGSIGGL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 167 NQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLtTMMTAWSKTPSLTAALMLTLLS 246
Cdd:MTH00144  164 NQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLS 242

                         250       260
                  ....*....|....*....|..
gi 2294271565 247 LAGLPPMTGFLPKWLIVQELTK 268
Cdd:MTH00144  243 LGGLPPFLGFCSKLLVLISSME 264
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-336 2.11e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 147.23  E-value: 2.11e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   8 SLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSmtnawsTGQWDITQLTY 87
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGGWMGLN 167
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLSL 247
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 248 AGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSqmkqwqTYKPINPMTSTLTSL 327
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSL------KSAPYEPKTKILISM 321


                  ....*....
gi 2294271565 328 SIMLLPLSP 336
Cdd:MTH00011  322 CTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-340 1.45e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.42  E-value: 1.45e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   8 SLITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTgqwditqLTY 87
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPitLLFLTSPSLNPTLLSMMAIVSAALGGWMGLN 167
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLSL 247
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 248 AGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLAYCATIMLPPNSTSQMKqwqtykpINPMTSTLTSL 327
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK-------INLLYSGLFIL 309

                         330
                  ....*....|...
gi 2294271565 328 SIMLLPLsPMLFT 340
Cdd:MTH00197  310 LMMMLPL-LMIFT 321
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 12-263 1.80e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 105.11  E-value: 1.80e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  12 GTTITISSSHWMMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDI-------- 82
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvln 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  83 -----TQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNptLLSMMAIVS 157
Cdd:MTH00196   85 sgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 158 AALGGWMGLNQTQIRKILAFSSISHLGWMI-------IILIHNPKLTLITFYLYTLTTTAIFLTLNsTNTLMLTTMMTAW 230
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieigsFESIQASLVYLFIYIIMSICVFSIILALN-VYKNLIIEFSGLS 241

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2294271565 231 SKTPSLTAALMLTLLSLAGLPPMTGFLPKWLIV 263
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-263 8.83e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 104.33  E-value: 8.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   9 LITGTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTY 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMSC----ILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSmmAIVSAALGGW 163
Cdd:MTH00199  186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 164 MGLNQTQIRKILAFSSISHLGWMIIIL-------IHNPKLTLITFYLYTLTTTAIFLTLNSTNTLmLTTMMTAWSKTPSL 236
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVaigsfesIQASLIYMIIYVIMSICSFSIILSLKLTKGL-IVEVSGLSRKNPVI 342

                         250       260
                  ....*....|....*....|....*..
gi 2294271565 237 TAALMLTLLSLAGLPPMTGFLPKWLIV 263
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 8.78e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.78e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  19 SSHWMMAWTGLEINTLAILPLI-SKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPT------LLSMMAIVSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIIL----IHNPKLTLITFYLYTLTTTAIFLTLNS-----TNTLMLTTMMTAWS 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2294271565 232 KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-275 1.30e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 95.18  E-value: 1.30e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  10 ITGTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLF-SSMTNAwSTGQWDITQLTY 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  88 PMS------------CILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKL----PPITLLFLTSPSLNPTLLS 151
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 152 MMAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKL----TLITFYLYTLTTTAIFLTLNS-TNTLML 223
Cdd:COG1007   271 LLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLlSRKGGE 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2294271565 224 TTMMTAWS----KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIA 275
Cdd:COG1007   351 AEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLA 406
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
12-275 7.68e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 84.10  E-value: 7.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  12 GTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTYP-- 88
Cdd:PRK05777  115 GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKAla 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  89 ----------MSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKL----PPITLLFLTSPSLNPT---LLS 151
Cdd:PRK05777  195 dgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqVLA 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 152 MMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKL----TLITFYLYTLTTTAIF--LTLNSTNTLMLTT 225
Cdd:PRK05777  275 IIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvISLLRRKGGEAES 354

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2294271565 226 MmTAWS----KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIA 275
Cdd:PRK05777  355 I-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 8.90e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 8.90e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  10 ITGTTITISSSHWMMAWTGLEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLT-- 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 ----------YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLP---PITLLFLTSP-SLNPTLLSM 152
Cdd:TIGR01770 192 lsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 153 MAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWMII-------ILIHNPKLTLITFYLYTLTTTAIFLTLNSTNTLM 222
Cdd:TIGR01770 272 LAIIAFLsmlIGNFGALAQKKVKRLLAYSSISHVGYILIgllagtlEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2294271565 223 LTTM--MTAWSKT-PSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIATIITLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 IEYIsdFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 26-264 3.09e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.12  E-value: 3.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  26 WTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTYPMS----------CILLT 95
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  96 IAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIM-KLPP------ITLLFLTSPSLNP-TLLSMMAIVSAALGGWMGLN 167
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLLLVLGLLTMLVGALGALA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIilihnpkltLITFYLYTLTTTAIFLTLNS-----------------TNTLMLTTMMTAW 230
Cdd:COG0651   293 QRDLKRLLAYSSVSQIGYILL---------GLGLGTPLGLAGALFHLLNHalakallflaagaieraTGTRDLDKLGGLG 363

                         250       260       270
                  ....*....|....*....|....*....|....
gi 2294271565 231 SKTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQ 264
Cdd:COG0651   364 KRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 12-263 1.01e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 1.01e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  12 GTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAI---------EASTKYFLIQAVASALLLFSSMTNAWSTGQ--- 79
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegm 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  80 -----------WDITQLTYPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLppITLLFLTSPSLNPT 148
Cdd:MTH00198  280 lgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSK 357

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 149 LLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMIIIL-------IHNPKLTLITFYLYTLTTTAIFLTLNSTNTL 221
Cdd:MTH00198  358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTR 437

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 222 MLTTM-----------------MTAWSK-TPSLTAALMLTLLSLAGLPPMTGFLPKWLIV 263
Cdd:MTH00198  438 TPTSRqrdgsfgnynlvrrlvdLTILSRgQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 47-259 1.07e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 62.33  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  47 RAIEASTKYFLIQAVASALLLFS-SMTNAWSTGQWDI---------TQLTYPMSC----ILLTIAISMKLGLAPFHFWFP 112
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 113 EVLQGSTM-------MTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGW 185
Cdd:CHL00049  239 DVYEGSPTpvvaflsVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 186 MII-ILIHNPKL--------TLITFYLYTLTTTAIFLTLNSTNTLMLTTMMTAWSKTPSLTAALMLTLLSLAGLPPMTGF 256
Cdd:CHL00049  319 VIIgIIVGDSNDgyasmityMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                  ...
gi 2294271565 257 LPK 259
Cdd:CHL00049  399 FGK 401
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-188 3.36e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 60.87  E-value: 3.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  45 HPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQW-----DITQLTYPMS-----CILLTIAISMKLGLAPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 115 LQGSTMMTSLLLATIM-KLP-------PITLLFLTSPSLNPTLLSMmAIVSAALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 2294271565 187 II 188
Cdd:COG1008   315 LL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 44-266 9.58e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.78  E-value: 9.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  44 HHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL-----------TYPMSCILLTIAISMKLGLAPFHFWFP 112
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 113 EVLQGSTMMTSLLLATIMKLPPITLLFLTSP--SLNPTLLSMMAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWMI 187
Cdd:COG1009   236 DAMEGPTPVSALLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMF 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 188 IILihnpkltlitfyLYTLTTTAIFLTLN-----------------STNTLMLTTMMTAWSKTPSLTAALMLTLLSLAGL 250
Cdd:COG1009   316 LAL------------GVGAYVAALFHLLThaffkallflgagsvihATGTRDIRKMGGLRKKMPITAITFLIGALSLAGI 383

                         250
                  ....*....|....*.
gi 2294271565 251 PPMTGFLPKWLIVQEL 266
Cdd:COG1009   384 PPFAGFFSKEAILEAA 399
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 5.81e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.03  E-value: 5.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  29 LEINTLAILPLIS-KSHHPRAIEASTKYFLIQAVASALLLFSSmtnAWSTGQWDITQLTYPMSCI-------------LL 94
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  95 TIAISMKLGLAPFHFW----FPEVLQGSTMMtsLLLATIMKLPPI--TLLFLTSPSLNPT----LLSMMAIVSAALGGWM 164
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAM--LLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAM 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 165 GLNQTQIRKILAFSSISHLGWMI------IILIHNPKLTLITFYLYTLtttAIFLTLN-----------------STNTL 221
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAMASYGEIALAG---GIYHIVNhalykallfltagaviyETGTR 381

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2294271565 222 MLTTMMTAWSKTPSLTAALMLTLLSLAGLPPMTGFLPKWLI 262
Cdd:PRK08376  382 NLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-259 9.05e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.60  E-value: 9.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  46 PRAIEASTKYFLIQAVASALLLF-SSMTNAWSTGQWDITQLTYPM---SCILLTIA-------ISMKLGLAPFHFWFPEV 114
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALitsPSLGLALAlvfviagIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 115 LQGSTMMTSLLLATIMKLP----PITLLFLTSPSLNP---TLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMI 187
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 188 IILIHNPKLTLitFYLYTLTTTAIFLTLNSTNTLMLTTMMTA----------WSKTPSLTAALMLTLLSLAGLPPMTGFL 257
Cdd:PRK02504  317 IGLVAGTEAGY--ASMVFYLLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                  ..
gi 2294271565 258 PK 259
Cdd:PRK02504  395 GK 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 76-259 1.03e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 53.77  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  76 STGQWDITQL-TYPMSCILLTIAISM-------KLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLL------FLT 141
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFAD 262

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 142 SPSLNPTLLSMmAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMIIIL-IHNPKLTLITFYLYTLTTT---AIFLTL-- 215
Cdd:PRK12644  263 VPVWRPTVLVL-GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLAHALfkaALFLVVgi 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2294271565 216 --NSTNTLMLTTMMTAWSKTPSLTAALMLTLLSLAGLPPMTGFLPK 259
Cdd:PRK12644  342 idHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-188 2.20e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  46 PRAIEASTKYFLIQAVASALLLFS----SMTNAWSTGQWDITQLTYPMSC-----ILLTIAISMKLGLAPFHFWFPEVLQ 116
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 117 GSTMMTSLLLATIM-KLPPITLLFLTSPsLNP-------TLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
49-264 6.41e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 50.72  E-value: 6.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  49 IEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL-----------TYPMSCILLTIAISMKLGLAPFhFWFPEVLQG 117
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 118 STMMTSLLLATIMKLPPI-------TLLFLTSPSLNPTLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII-I 189
Cdd:PRK12663  236 PNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 190 LIHNPKL---TLITFYLYTLTTTAIFLTLNSTNTL----MLTTMMTAWSKTPSLTAALMLTLLSLAGLPPMTGFLPKWLI 262
Cdd:PRK12663  316 ALGTPAGingAIFYLVHDMVVKTALFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                  ..
gi 2294271565 263 VQ 264
Cdd:PRK12663  396 VQ 397
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-275 6.42e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 6.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  30 EINTLAILPLISKSHHpRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTYPMS-----------CILLTIAI 98
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  99 SMKLGLAPFHFWFPE-----------VLQGS-TMMTSLLLATIMKLPPITLLFLT------SPSLNPTLLSMMAIvSAAL 160
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFSEfgtyrgVPLFNYILAWLGNI-SIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 161 GGWMGLNQTQIRKILAFSSISHLGWMIIILIHNPKLT----LITFYLYTLTTTAIFLtlnSTNTLMLTTMMTAWS----- 231
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFL---IFAAVIYRTGTTKISemggl 362

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2294271565 232 --KTPSLTAALMLTLLSLAGLPPMTGFLPKWLIVQELTKQELTSIA 275
Cdd:PRK08668  363 ieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK12650 PRK12650
DUF4040 family protein;
25-259 6.93e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.81  E-value: 6.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  25 AWtglEINTLAILPLISKSHhPRAIEASTKYfLIQAVASALLLFSSMtnAWSTGQWDITQLtypmSCIL----------L 94
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRT-LILTFFGGLTLLAAV--AIAATQTGTTSL----SGILhsdvwaekpgL 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  95 TIAISMKLGLA--------PFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSL--NPT---LLSMMAIVSAALG 161
Cdd:PRK12650  207 TTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMG 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 162 GWMGLNQTQIRKILAFSSISHLGWMI-IILIHNP-KLT--LITFYLYTLTTTAIFLTL----NSTNTLMLTTMMTAWSKT 233
Cdd:PRK12650  287 AVFAVQKTDLKKLTAYSTVSQLGWIVaTIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRM 366

                         250       260
                  ....*....|....*....|....*.
gi 2294271565 234 PSLTAALMLTLLSLAGLPPMTGFLPK 259
Cdd:PRK12650  367 PFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-188 1.29e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 49.70  E-value: 1.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  51 ASTKYFLIQAVASALLLFSSMTNAWSTG--QWDITQL---TYPMSCILL-----TIAISMKLGLAPFHFWFPEV-LQGST 119
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLllapiLVGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2294271565 120 MMTSLLLATIMKLPPITLL------FLTSPSLNPTLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-187 1.95e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.44  E-value: 1.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  44 HHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLT--------------YPMSCILLTIAISMKLGLAPFHF 109
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILqdselienikghplFLITLILIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 110 WFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPT-----LLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                  ...
gi 2294271565 185 WMI 187
Cdd:PRK12649  316 YLM 318
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 66-189 3.82e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 48.53  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  66 LLFSSMTNAWSTGqwDITQLTYPmsCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSP-- 143
Cdd:MTH00020  192 LDFSSVFNMVVSA--PSSDITLI--CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlf 267

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2294271565 144 SLNPTLLSMMAIV---SAALGGWMGLNQTQIRKILAFSSISHLGWMIII 189
Cdd:MTH00020  268 EQAPLALIIVTIVgslTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVA 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-266 5.46e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.95  E-value: 5.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  29 LEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFS-SMTNAwSTGQWDITQL--------TYPMSCILLTIAIS 99
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 100 MKLGLAPFHFWFPEVLQG-STMMTSLLLATIMKLPP------ITLLFLTSPSLNPTLLSMM---AIVSAALGGWMGLNQT 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriYFTVFGGDFRFALGLGWLLavlALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 170 QIRKILAFSSISHLGWMII-ILIHNPKL---TLITFYLYTLTTTAIFLTLNS----TNTLMLTTMMTAWSKTPSLTAALM 241
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLAAGAievtYGTRRLSELSGLGRRMPLTAAAFA 373

                         250       260
                  ....*....|....*....|....*
gi 2294271565 242 LTLLSLAGLPPMTGFLPKWLIVQEL 266
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGA 398
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-188 5.56e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 47.72  E-value: 5.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  51 ASTKYFLIQAVASALLLFSSMTNAWSTGQ--WDITQLT---YPMSCILLT-----IAISMKLGLAPFHFWFPEVLQGSTM 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2294271565 121 MTSLLLATIM-KLPPITLLFLTSPSLNPT------LLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:PRK12561  218 PVSMILAGVLlKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-188 1.20e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  46 PRAIEASTKYFLIQAVASALLLFSSMT----NAWSTGQWDITQL-TYPMSCILLT-------IAISMKLGLAPFHFWFPE 113
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 114 VLQGSTMMTSLLLATIM-----------KLPpitlLFLTSPSLNPTLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISH 182
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*.
gi 2294271565 183 LGWMII 188
Cdd:PRK05846  313 MGFVTL 318
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 1.42e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.48  E-value: 1.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  29 LEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTY--PMSCILLTIAISMKLGLAP 106
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 107 FHFWFPEVLQGSTMMTSLLLATIM---KLPPITLLFLTSPSLNPtLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHL 183
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 184 GWMIIILIHNPKLTLitfyLYTLTTTAIFL---TLNSTNTLMLTTMMTAWSKTPSltaaLMLTLLSLAGLPPMTGFLPKW 260
Cdd:PRK07234  282 GFILAAPLVGGLYAL----AHGLVKSTLFLcagALPSRNFTELISQMLGIGKWIP----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 2294271565 261 LIVQELT 267
Cdd:PRK07234  354 LTLKNLL 360
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 96-264 2.01e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 2.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  96 IAISMKLGLapfHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPTLLSMMAI-----VSAALGGWMGLNQTQ 170
Cdd:MTH00032  236 IGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQND 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 171 IRKILAFSSISHLGWMIIIL----IHNpkLTLITFYLYTLTTTAIFLTLNS------TNTLMLTTMMTAWSKTPSLTAAL 240
Cdd:MTH00032  313 LKKVIAYSTCSQLGYMVLIIgiegSHN--VGLFHLVNHAFFKALLFLSAGSvihsttVDEQDMRKMGGLIHSIPFTYTMM 390

                         170       180
                  ....*....|....*....|....
gi 2294271565 241 MLTLLSLAGLPPMTGFLPKWLIVQ 264
Cdd:MTH00032  391 LIGSFSIMGLPYLTGFYSKDLILE 414
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-188 3.58e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.13  E-value: 3.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565   9 LITGTTITISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVA------SALLLFSSMTNAWSTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  83 TQLT----------YPMSCILLTIAISMKLGLAPFHFWFPEV-LQGSTMMTSLLLATIMKLPPITLLFLTS--------P 143
Cdd:PRK08676  191 TELAahasllspsvLGASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaaE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2294271565 144 SLNPTLLSMmAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:PRK08676  271 QFSNVLIGL-GIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
48-188 3.94e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 45.40  E-value: 3.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  48 AIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTYPMSCILLTIAISMKLGLA----------------PFHFWF 111
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 112 PEVLQGSTMMTSLLLATIMKLPPITLLFLTSP--SLNPTLLSMMAIV---SAALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTgaiTAFLGASIALTQNDIKKGLAYSTISQLGYM 330


                  ..
gi 2294271565 187 II 188
Cdd:PRK07376  331 VM 332
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 8.91e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.95  E-value: 8.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  29 LEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFS-----------SMTNAWSTGQWDITQLTYPMSCILLTIA 97
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyaitgtlNMGDMFLIIQDLPTNRAIQIGVLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  98 ISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITL------------LFLTSPSLNPTLLSMmAIVSAALGGWMG 165
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMIL-AALAIVFGSVLA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 166 LNQTQIRKILAFSSISHLGWMIIILIHNPKLTLITFYLYT----LTTTAIFLTLNST----NTLMLTTMMTAWSKTPSLT 237
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSIsyhfGTTKLEDCLNLWKSMPKIT 377

                         250       260
                  ....*....|....*....|....*.
gi 2294271565 238 AALMLTLLSLAGLPPMTGFLPKWLIV 263
Cdd:PRK12662  378 LAFVLLSLSLIGMPPTSGFVAKWYIL 403
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 289-336 1.81e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 38.78  E-value: 1.81e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2294271565 289 YLRLAYCATIMLPPNSTSQMKQWQTYKP-INPMTSTLTSLSIMLLPLSP 336
Cdd:pfam06444   3 YLRLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-191 2.61e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  55 YFLIQAVASALLLFSSMTNAWSTGQWDITQLTYP-----MSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATI 129
Cdd:PRK08667  167 YFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGV 246

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2294271565 130 M-KLPPITLL-FLT---SPSLNPTLLSMMA-IVSAALGGWMGLNQTQIRKILAFSSISHLGwmiIILI 191
Cdd:PRK08667  247 MlKVAVYGLVrFLMdvlSPELWWGVLILLAgSISALLGVIYALKEHDLKGLLAYSSIENIG---IILM 311
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-188 2.87e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.39  E-value: 2.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  51 ASTKYFLIQAVASALLLFSSMTNAWSTGQWD------ITQ-LTYPMSCILLTIAI---SMKLGLAPFHFWFPEVLQGSTM 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2294271565 121 MTSLLLATIM-KLPPITL------LFLTSPSLNPTLLSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILV 312
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 29-263 3.47e-04

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 42.27  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  29 LEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL------TYPMSCILLTIAISMKL 102
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALsglhgsLKYLVFLGILFAAWGKS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 103 GLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNP------TLLSMMAIVSAALGGWMGLNQTQIRKILA 176
Cdd:PRK06525  222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 177 FSSISHLGWMIIilihnpKLTLITFYLYTLTTTAIFLTLN-----------------STNTLMLTTMMTAWSKTPSLTAA 239
Cdd:PRK06525  302 YSTITQLGYMFF------GLSLAILGSRLALEGSIAYIFNhafakslfflvagalsySCGTRLLPRLRGVLKKLPLVGVG 375

                         250       260
                  ....*....|....*....|....
gi 2294271565 240 LMLTLLSLAGLPPMTGFLPKWLIV 263
Cdd:PRK06525  376 FCVAALAITGVPPFNGFFSKFPIF 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 96-191 5.21e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.83  E-value: 5.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  96 IAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATI-MKLPPITLLFLTSP-------SLNPTLLSmMAIVSAALGGWMGLN 167
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVIA-MGIVGIVYGSFATCR 316

                          90       100
                  ....*....|....*....|....
gi 2294271565 168 QTQIRKILAFSSISHLGWMIIILI 191
Cdd:MTH00226  317 QIDVKRLVAYSSVAHMGLVSITLV 340
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 71-186 6.39e-04

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 41.30  E-value: 6.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  71 MTNAWSTGQWDITQLTYpmSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSP--SLNPT 148
Cdd:PRK06590  202 FAAAPQFFGLGWSALTL--ICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPlfELSPE 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2294271565 149 LLSMMAIVSAA---LGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK06590  280 ALLFVAIVGAVtalFAAFIGLVQTDIKRVLAYSTMSQLGYM 320
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
14-188 7.77e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 7.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  14 TITISSSHW---MMAW--TGLEINTLailpLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQL--- 85
Cdd:PRK08168  114 HLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  86 --TYPMS------CILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPItLLFLTSPSLNP-----TLLSM 152
Cdd:PRK08168  190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGF-VLIRFAPLLEQapparWLLVL 268

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2294271565 153 MAIVSAALGGWMGLNQTQIRKILAFSSISHLGWMII 188
Cdd:PRK08168  269 VGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 106-262 1.83e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.29  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 106 PFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPT-----LLSMMAIVSAALGGWMGLNQTQIRKILAFSSI 180
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 181 SHLGWMIIIL-IHNP---KLTLITFYLYTLTTTAIFLTL----NSTNTLMLTTMMTAWSKTPSLTAALMLTLLSLAGLPP 252
Cdd:PRK12647  293 SALGTLVMLLgLGSElaiKAAVLFLVAHSLYKGALFMVAgiidHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170
                  ....*....|
gi 2294271565 253 MTGFLPKWLI 262
Cdd:PRK12647  373 LFGFLAKELI 382
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-188 1.91e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.08  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  51 ASTKYFLIQAVASALLLFSSMTNAWSTG--QWDITQL---TYPMSCILLT-----IAISMKLGLAPFHFWFPEVLQGSTM 120
Cdd:PRK02546  166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALaakDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGEATA 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 121 MTSLLLATIM--------------KLPPITLLFltSPSLnpTLLSMMAIVSAALGGWMglnQTQIRKILAFSSISHLGWM 186
Cdd:PRK02546  246 PVHMLLAGILlkmggyallrmnagMLPDAHAQF--APLL--IVLGVVNIIYAALTSFA---QRNLKRKIAYSSISHMGFV 318


                  ..
gi 2294271565 187 II 188
Cdd:PRK02546  319 LI 320
PRK12646 PRK12646
DUF4040 family protein;
87-191 2.80e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 39.74  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  87 YPMSCILLTIAISMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITLLFLTSPSLNPT-----LLSMMAIVSAALG 161
Cdd:PRK12646  209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFG 288

                          90       100       110
                  ....*....|....*....|....*....|
gi 2294271565 162 GWMGLNQTQIRKILAFSSISHLGwMIIILI 191
Cdd:PRK12646  289 SITALKQWDLKGILAYSTISQLG-MIMAMV 317
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 16-186 3.46e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.14  E-value: 3.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  16 TISSSHWMMAWTGLEINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSS----------MTNAWSTGQW-DITQ 84
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  85 LTYPMSCILLTIAISM-------KLGLAPFHFWFPEV-LQGSTMMTSLLLATIMKLPPITLL---FLTSPSLNP----TL 149
Cdd:PRK06458  204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVALYAVLryyILIDAAIGSdfpgRL 283

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2294271565 150 LSMMAIVSAALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK06458  284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-264 5.66e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 5.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  30 EINTLAILPLISKSHHPRAIEASTKYFLIQAVASALLLFSSMTNAWSTGQWDITQLTYPM-----------SCILLTIAI 98
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNALlvnptspviygGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565  99 SMKLGLAPFHFWFPEVLQGSTMMTSLLLATIMKLPPITL------LFLTSPSLNPTLLSMMAIVSAA--LGGWMGLNQTQ 170
Cdd:PRK06277  210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSAQGVLIALSVLAmvFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 171 IRKILAFSSISHLGWMIIILIHNPKLT----LITFYLYTLTTTAIFL----TLNSTNTLMLTTMMTAWSKTPSLTAALML 242
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGivagIFHAINHVIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260
                  ....*....|....*....|..
gi 2294271565 243 TLLSLAGLPPMTGFLPKWLIVQ 264
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQ 391
ndhF CHL00025
NADH dehydrogenase subunit 5
 106-190 9.16e-03

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 37.95  E-value: 9.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294271565 106 PFHFWFPEVLQGSTMMTSLLLATIMKLPPITL------LFLTSPSLNpTLLSMMAIVSAALGGWMGLNQTQIRKILAFSS 179
Cdd:CHL00025  245 PLHVWLPDAMEGPTPISALIHAATMVAAGIFLvarllpLFIVIPYIM-NLISLIGIITALLGATLALAQKDIKRGLAYST 323

                          90
                  ....*....|.
gi 2294271565 180 ISHLGWMIIIL 190
Cdd:CHL00025  324 MSQLGYMMLAL 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH