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Conserved domains on  [gi|2196262743|gb|ULF47334|]
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hypothetical chloroplast RF19 [Astragalus sinicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf1 super family cl42951
Ycf1; Provisional
 6-1740 0e+00

Ycf1; Provisional


The actual alignment was detected with superfamily member CHL00204:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1744.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743    6 LVSLCLKIINSVVIVGFYYGFLTTLSIAPSYLFLIRAWVM---EEETEKQVSATTGFITGQLMMFISIYYAPMHLALSKP 82
Cdd:CHL00204     4 LVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRP 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   83 HTITLLTLPYLFFYFLDKNDKHYYlNYGYNNTNSMRKFSIHKVFVNNLLFQLLNPLLFPSSILIRLVNIYLFRCNNKLLF 162
Cdd:CHL00204    84 HTITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLF 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  163 LTSSFVGWLIGHIFLMKLIGFLLVWLQQNNSInsiKSKVTIRFDKYILLQLRNYVSQIFVLFSFITFLHYLGRIPVPYF- 241
Cdd:CHL00204   163 VTSSFVGWLIGHILFMKWVGLVLVWIQQNNSI---RSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFt 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  242 --LKGEVIKSEENENDEIEEFDGERDSEMK-----------KDLSSYLFDEKDKTFTNIQEEEE----------DPL--- 295
Cdd:CHL00204   240 kkLKETSETEERVESEEETDVEIETASETKgtkqeqegsteEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLfwf 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  296 --PLVTTLFDYQRWNRPLRYIKNGHFENVVRNETSQFFFHICQSDGKERISFTYPPNLSTFLQIMEKKIDLFTRDKISNN 373
Cdd:CHL00204   320 ekPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSD 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  374 ELSNYWSSNHKEKRNKLINEFYKRARVLDKQFFPLDVLENRIRLCNDTNKLKYLTEIYDPFLNGSFRGQMPNSFSISIEN 453
Cdd:CHL00204   400 ELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIIN 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  454 EfHKTKNSI---LINKIHGILLSI-----FEQKINPFARKSLLNEIGFFFNLISKFSEKSVSSLNFDKLDLFPEHEQVNI 525
Cdd:CHL00204   480 E-TSIKNNIegvWINKIHGILLNNtdyqeFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKI 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  526 YSKEKKRKKKFLLDTLDTldaikndHPNDHK-------IHEISKTVPRWSYSLIDELEELT----EDVQEEHQIRCRYAD 594
Cdd:CHL00204   559 NSEEEIKIFKFLFDAVIT-------DPNDQTiikksigIKEISKKVPRWSYKLIDELEQLEgeneENVPSDHQIRSRKAK 631

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  595 RIVIFNGQTDTFiqpgNISDTDTDDDNDSNTREITgenglfLLNYSREPDFSRDIIKGSMRALRRKTVTWKLFQRNVYSP 674
Cdd:CHL00204   632 RVVIFTDNESNN----DIYTNLKDNQNSDQKDEVA------LIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  675 LFLEKIQPFFMpdLFDDISQYWKEYFRKKGTDNSEFLTFEKRVEEEEEAERKYD--------EEKRLKEIEEAWDSIIYG 746
Cdd:CHL00204   702 LFLDRIDKLFF--FSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykrEEKARIEIAEAWDSILFA 779

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  747 LIIRSFVILIQSIIRKYITLPSLIITKNIIRILLFQYPEWSEDFRDWKKEVHIFCTYQGVPVSNRELPNNWFTDGLQVRI 826
Cdd:CHL00204   780 QVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKI 859

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  827 LSPFVLKPWHKSKLRSPfvlkpwHKSKLRsteKKNLQNKNFWFLTACGTLVESYLANFFPNPlAFLGPiLKKIKKQLKKN 906
Cdd:CHL00204   860 LFPFYLKPWHRSKLRSS------HKDRMK---KKKKKKNDFCFLTVWGMETELPFGSPRKRP-SFFEP-IFKELKKKIRK 928

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  907 FKNRFFLVL---NERKKWFVTIFKEIEKWNIKSILF-----------------RFKNISELGENN--KNSTISknNPTIY 964
Cdd:CHL00204   929 FKKKYFLVLkilKERTKLFLKVSKETKKWIIKSFLFlkriikelskrnpillfGLREIYELNETKkeKDSIIS--NQMIH 1006

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  965 ESPVIIHSMNWTNSSLTEKRIKDLNVKTKTIITEIEKMTNEGVVLTSEKNLNSNKTTYDAKRFELQKNILQILQRRIVRL 1044
Cdd:CHL00204  1007 ESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRRNTRL 1086

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1045 TRKSYSFFKFFMEKVYIDILLCIIGILRINIQLFLESTKKIVTKSISNKKTNAERIDKTHQSRIPFMSIIHKSC---NMT 1121
Cdd:CHL00204  1087 IRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLyniSNK 1166

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1122 NTNSENSCDVSSLSQAYVFFKLSQIQVINgyKYKLRSIFESHERSFFLKNEIKNYlFRIQGIFNSKLRHKNRSHSLMNQW 1201
Cdd:CHL00204  1167 NKNSKIFYDLSSLSQAYVFYKLSQTQVIN--LYKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1202 TNWLKVHYQYDLPQSRWSRLVPQNWRNRINKHRVAQNKDLINYDSYDKTRLILYKNEQ------LVNFQKKIKKQYRYDL 1275
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQNdfeansLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1276 LSYKYLNYADKKNsyiygyrspsQTNKNQTISYNDNTCKKEFFDIMGDISIKNY----RVINMEKYLDRKY--------- 1342
Cdd:CHL00204  1324 LSYKSINYEDKKF----------QVNKNQEISYNYNTRKVNLFDMPEGIAINNYlgkgDILDIEKNPDRKYldwrilnfs 1393

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1343 --------------------------------------------------FDWMVMNVEIPNRSISNrkSKFWFFSKLSI 1372
Cdd:CHL00204  1394 lrkkvdieswvdtdskskkntktgvnnyqiidkidhqdfennqankkknfFDWMGMNEEILNRPISN--LEFWFFPEFVL 1471

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1373 FYDEYKKNPWIVPIKSLFLPFYGKFDILKGANEeadeyKKNPWIVPIKSLFLPFYGKfdilkgaNEEAEVDTGPLSQYLS 1452
Cdd:CHL00204  1472 LYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQ-----KKKGFIPSNEKKSIEIENR-------NQEEKEPAGQGELESD 1539

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1453 ILNHAYEDSYWENGWKSIKlKEYIDID------RNDYLNDLKGEQTFLLNKYLGFHVNFDNLLHERIMNLITFNCLLIRL 1526
Cdd:CHL00204  1540 KEKKGNLESVLSNQEKNIE-EDYAESDikkrknKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRL 1618

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1527 KNLKKFFIISIKKGELSLDTMGILTDIPFTltgvrnrkEFSEKQTFSVEPLRLARKNYEQFFMYQTISLSLIHKNKRQIF 1606
Cdd:CHL00204  1619 INPREIAISSIQRGEMSLDIMMIQKNLTLT--------ELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQIN 1690

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1607 QINPEKSRVDKNI---TRTRNQKITGNKDKNHTDLLVPENLLSNRRRRELRILICLNPRNT----RNTINCNENKKNTGF 1679
Cdd:CHL00204  1691 QRYREKKYVDKKNfdeSITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKnavdRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2196262743 1680 QVLAQNKDLDIETKKLINLKFFLWPNYRLEDLACINRYWFDTQNGSRFSILRIHMYPRLKI 1740
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKI 1831
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 6-1740 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1744.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743    6 LVSLCLKIINSVVIVGFYYGFLTTLSIAPSYLFLIRAWVM---EEETEKQVSATTGFITGQLMMFISIYYAPMHLALSKP 82
Cdd:CHL00204     4 LVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRP 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   83 HTITLLTLPYLFFYFLDKNDKHYYlNYGYNNTNSMRKFSIHKVFVNNLLFQLLNPLLFPSSILIRLVNIYLFRCNNKLLF 162
Cdd:CHL00204    84 HTITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLF 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  163 LTSSFVGWLIGHIFLMKLIGFLLVWLQQNNSInsiKSKVTIRFDKYILLQLRNYVSQIFVLFSFITFLHYLGRIPVPYF- 241
Cdd:CHL00204   163 VTSSFVGWLIGHILFMKWVGLVLVWIQQNNSI---RSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFt 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  242 --LKGEVIKSEENENDEIEEFDGERDSEMK-----------KDLSSYLFDEKDKTFTNIQEEEE----------DPL--- 295
Cdd:CHL00204   240 kkLKETSETEERVESEEETDVEIETASETKgtkqeqegsteEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLfwf 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  296 --PLVTTLFDYQRWNRPLRYIKNGHFENVVRNETSQFFFHICQSDGKERISFTYPPNLSTFLQIMEKKIDLFTRDKISNN 373
Cdd:CHL00204   320 ekPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSD 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  374 ELSNYWSSNHKEKRNKLINEFYKRARVLDKQFFPLDVLENRIRLCNDTNKLKYLTEIYDPFLNGSFRGQMPNSFSISIEN 453
Cdd:CHL00204   400 ELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIIN 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  454 EfHKTKNSI---LINKIHGILLSI-----FEQKINPFARKSLLNEIGFFFNLISKFSEKSVSSLNFDKLDLFPEHEQVNI 525
Cdd:CHL00204   480 E-TSIKNNIegvWINKIHGILLNNtdyqeFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKI 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  526 YSKEKKRKKKFLLDTLDTldaikndHPNDHK-------IHEISKTVPRWSYSLIDELEELT----EDVQEEHQIRCRYAD 594
Cdd:CHL00204   559 NSEEEIKIFKFLFDAVIT-------DPNDQTiikksigIKEISKKVPRWSYKLIDELEQLEgeneENVPSDHQIRSRKAK 631

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  595 RIVIFNGQTDTFiqpgNISDTDTDDDNDSNTREITgenglfLLNYSREPDFSRDIIKGSMRALRRKTVTWKLFQRNVYSP 674
Cdd:CHL00204   632 RVVIFTDNESNN----DIYTNLKDNQNSDQKDEVA------LIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  675 LFLEKIQPFFMpdLFDDISQYWKEYFRKKGTDNSEFLTFEKRVEEEEEAERKYD--------EEKRLKEIEEAWDSIIYG 746
Cdd:CHL00204   702 LFLDRIDKLFF--FSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykrEEKARIEIAEAWDSILFA 779

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  747 LIIRSFVILIQSIIRKYITLPSLIITKNIIRILLFQYPEWSEDFRDWKKEVHIFCTYQGVPVSNRELPNNWFTDGLQVRI 826
Cdd:CHL00204   780 QVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKI 859

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  827 LSPFVLKPWHKSKLRSPfvlkpwHKSKLRsteKKNLQNKNFWFLTACGTLVESYLANFFPNPlAFLGPiLKKIKKQLKKN 906
Cdd:CHL00204   860 LFPFYLKPWHRSKLRSS------HKDRMK---KKKKKKNDFCFLTVWGMETELPFGSPRKRP-SFFEP-IFKELKKKIRK 928

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  907 FKNRFFLVL---NERKKWFVTIFKEIEKWNIKSILF-----------------RFKNISELGENN--KNSTISknNPTIY 964
Cdd:CHL00204   929 FKKKYFLVLkilKERTKLFLKVSKETKKWIIKSFLFlkriikelskrnpillfGLREIYELNETKkeKDSIIS--NQMIH 1006

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  965 ESPVIIHSMNWTNSSLTEKRIKDLNVKTKTIITEIEKMTNEGVVLTSEKNLNSNKTTYDAKRFELQKNILQILQRRIVRL 1044
Cdd:CHL00204  1007 ESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRRNTRL 1086

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1045 TRKSYSFFKFFMEKVYIDILLCIIGILRINIQLFLESTKKIVTKSISNKKTNAERIDKTHQSRIPFMSIIHKSC---NMT 1121
Cdd:CHL00204  1087 IRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLyniSNK 1166

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1122 NTNSENSCDVSSLSQAYVFFKLSQIQVINgyKYKLRSIFESHERSFFLKNEIKNYlFRIQGIFNSKLRHKNRSHSLMNQW 1201
Cdd:CHL00204  1167 NKNSKIFYDLSSLSQAYVFYKLSQTQVIN--LYKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1202 TNWLKVHYQYDLPQSRWSRLVPQNWRNRINKHRVAQNKDLINYDSYDKTRLILYKNEQ------LVNFQKKIKKQYRYDL 1275
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQNdfeansLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1276 LSYKYLNYADKKNsyiygyrspsQTNKNQTISYNDNTCKKEFFDIMGDISIKNY----RVINMEKYLDRKY--------- 1342
Cdd:CHL00204  1324 LSYKSINYEDKKF----------QVNKNQEISYNYNTRKVNLFDMPEGIAINNYlgkgDILDIEKNPDRKYldwrilnfs 1393

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1343 --------------------------------------------------FDWMVMNVEIPNRSISNrkSKFWFFSKLSI 1372
Cdd:CHL00204  1394 lrkkvdieswvdtdskskkntktgvnnyqiidkidhqdfennqankkknfFDWMGMNEEILNRPISN--LEFWFFPEFVL 1471

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1373 FYDEYKKNPWIVPIKSLFLPFYGKFDILKGANEeadeyKKNPWIVPIKSLFLPFYGKfdilkgaNEEAEVDTGPLSQYLS 1452
Cdd:CHL00204  1472 LYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQ-----KKKGFIPSNEKKSIEIENR-------NQEEKEPAGQGELESD 1539

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1453 ILNHAYEDSYWENGWKSIKlKEYIDID------RNDYLNDLKGEQTFLLNKYLGFHVNFDNLLHERIMNLITFNCLLIRL 1526
Cdd:CHL00204  1540 KEKKGNLESVLSNQEKNIE-EDYAESDikkrknKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRL 1618

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1527 KNLKKFFIISIKKGELSLDTMGILTDIPFTltgvrnrkEFSEKQTFSVEPLRLARKNYEQFFMYQTISLSLIHKNKRQIF 1606
Cdd:CHL00204  1619 INPREIAISSIQRGEMSLDIMMIQKNLTLT--------ELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQIN 1690

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1607 QINPEKSRVDKNI---TRTRNQKITGNKDKNHTDLLVPENLLSNRRRRELRILICLNPRNT----RNTINCNENKKNTGF 1679
Cdd:CHL00204  1691 QRYREKKYVDKKNfdeSITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKnavdRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2196262743 1680 QVLAQNKDLDIETKKLINLKFFLWPNYRLEDLACINRYWFDTQNGSRFSILRIHMYPRLKI 1740
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKI 1831
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 17-878 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 888.87  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   17 VVIVGFYYGFLTTLSIAPSYLFLIRAWVM---EEETEKQVSATTGFITGQLMMFISIYYAPMHLALSKPHTITLLTLPYL 93
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   94 FFYFLDKNDKHYYlNYGYNNTNSMRKFSIHKVFVNNLLFQLLNPLLFPSSILIRLVNIYLFRCNNKLLFLTSSFVGWLIG 173
Cdd:pfam05758   81 LFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  174 HIFLMKLIGFLLVWLQQNNSInsiKSKVTIRFDKYILLQLRNYVSQIFVLFSFITFLHYLGRIPVPYF---LKGEVIKSE 250
Cdd:pfam05758  160 HILFMKWVGLVLVWIQQNNSI---RSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFtkkLKETSETEE 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  251 ENENDEIEEFDGERDSEMK-----------KDLSSYLFDEKDKTFTNIQEEEEDPL------------------------ 295
Cdd:pfam05758  237 RYESEEETDVEIETTSETKgtkqeqersteEDPSPSLFSEEGEDLDKIDETEEIRVngkdkikdefhfhfretcyknspi 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  296 --------------------------------PLVTTLFDYQRWNRPLRYIKNGHFENVVRNETSQFFFHICQSDGKERI 343
Cdd:pfam05758  317 yetsyldgnqenskleilkekkknknlfwfekPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERI 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  344 SFTYPPNLSTFLQIMEKKIDLFTRDKISNNELSNYWSSNHKEKRNKLINEFYKRARVLDKQFFPLDVLENRIRLCNDTNK 423
Cdd:pfam05758  397 SFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETK 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  424 LKYLTEIYDPFLNGSFRGQMPNSFSISI--ENEFHKTKNSILINKIHGILLSI----FEQKINPFARKSLLNEIGFFFNL 497
Cdd:pfam05758  477 KEYLPKIYDPFLNGPYRGRIKKVFSPSIinKTSRKNSLEGVWINKIHGILLSSnypeFEQKINIFDRKSLSTEIDYFLNL 556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  498 ISKFSEKSVSSLNFDKLDLFPEHEQVNIYSKEKKRKKKFLLDTLDTLDAIKNDHPNDHKIHEISKTVPRWSYSLIDELEE 577
Cdd:pfam05758  557 INEFSKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  578 L----TEDVQEEHQIRCRYADRIVIFNGQTdtfiQPGNISDTDTDDDNDSNTREITgenglfLLNYSREPDFSRDIIKGS 653
Cdd:pfam05758  637 LegenEENVAEDYQIRSRKAKRVVIFTDNQ----KNYDTYNNTKDTDNSEQKNEVA------LIRYSQQSDFRRDIIKGS 706

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  654 MRALRRKTVTWKLFQRNVYSPLFLEKIQP--FFMPDLFDDISQYWKEYFRKKG----TDNSEFLTFEKRVEEEEEAERKY 727
Cdd:pfam05758  707 MRAQRRKTVIWELFQANVHSPLFLDRIDKplFFSFDIFGLIKIIFKNWMRKKEefkiSSYTEEKTKESSKKEEDKKEDNK 786

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  728 DEEKRLKEIEEAWDSIIYGLIIRSFVILIQSIIRKYITLPSLIITKNIIRILLFQYPEWSEDFRDWKKEVHIFCTYQGVP 807
Cdd:pfam05758  787 REERARIEIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQ 866

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2196262743  808 VSNRELPNNWFTDGLQVRILSPFVLKPWHKSKLRSPfvlkpwHKSKLrsteKKNLQNKNFWFLTACGTLVE 878
Cdd:pfam05758  867 LSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSS------EKDLM----KKKVQKNDFCFLTVWGMETE 927
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 6-1740 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 1744.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743    6 LVSLCLKIINSVVIVGFYYGFLTTLSIAPSYLFLIRAWVM---EEETEKQVSATTGFITGQLMMFISIYYAPMHLALSKP 82
Cdd:CHL00204     4 LVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRP 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   83 HTITLLTLPYLFFYFLDKNDKHYYlNYGYNNTNSMRKFSIHKVFVNNLLFQLLNPLLFPSSILIRLVNIYLFRCNNKLLF 162
Cdd:CHL00204    84 HTITVLALPYLLFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLF 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  163 LTSSFVGWLIGHIFLMKLIGFLLVWLQQNNSInsiKSKVTIRFDKYILLQLRNYVSQIFVLFSFITFLHYLGRIPVPYF- 241
Cdd:CHL00204   163 VTSSFVGWLIGHILFMKWVGLVLVWIQQNNSI---RSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFt 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  242 --LKGEVIKSEENENDEIEEFDGERDSEMK-----------KDLSSYLFDEKDKTFTNIQEEEE----------DPL--- 295
Cdd:CHL00204   240 kkLKETSETEERVESEEETDVEIETASETKgtkqeqegsteEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLfwf 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  296 --PLVTTLFDYQRWNRPLRYIKNGHFENVVRNETSQFFFHICQSDGKERISFTYPPNLSTFLQIMEKKIDLFTRDKISNN 373
Cdd:CHL00204   320 ekPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSD 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  374 ELSNYWSSNHKEKRNKLINEFYKRARVLDKQFFPLDVLENRIRLCNDTNKLKYLTEIYDPFLNGSFRGQMPNSFSISIEN 453
Cdd:CHL00204   400 ELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIIN 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  454 EfHKTKNSI---LINKIHGILLSI-----FEQKINPFARKSLLNEIGFFFNLISKFSEKSVSSLNFDKLDLFPEHEQVNI 525
Cdd:CHL00204   480 E-TSIKNNIegvWINKIHGILLNNtdyqeFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKI 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  526 YSKEKKRKKKFLLDTLDTldaikndHPNDHK-------IHEISKTVPRWSYSLIDELEELT----EDVQEEHQIRCRYAD 594
Cdd:CHL00204   559 NSEEEIKIFKFLFDAVIT-------DPNDQTiikksigIKEISKKVPRWSYKLIDELEQLEgeneENVPSDHQIRSRKAK 631

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  595 RIVIFNGQTDTFiqpgNISDTDTDDDNDSNTREITgenglfLLNYSREPDFSRDIIKGSMRALRRKTVTWKLFQRNVYSP 674
Cdd:CHL00204   632 RVVIFTDNESNN----DIYTNLKDNQNSDQKDEVA------LIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSP 701

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  675 LFLEKIQPFFMpdLFDDISQYWKEYFRKKGTDNSEFLTFEKRVEEEEEAERKYD--------EEKRLKEIEEAWDSIIYG 746
Cdd:CHL00204   702 LFLDRIDKLFF--FSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykrEEKARIEIAEAWDSILFA 779

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  747 LIIRSFVILIQSIIRKYITLPSLIITKNIIRILLFQYPEWSEDFRDWKKEVHIFCTYQGVPVSNRELPNNWFTDGLQVRI 826
Cdd:CHL00204   780 QVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKI 859

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  827 LSPFVLKPWHKSKLRSPfvlkpwHKSKLRsteKKNLQNKNFWFLTACGTLVESYLANFFPNPlAFLGPiLKKIKKQLKKN 906
Cdd:CHL00204   860 LFPFYLKPWHRSKLRSS------HKDRMK---KKKKKKNDFCFLTVWGMETELPFGSPRKRP-SFFEP-IFKELKKKIRK 928

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  907 FKNRFFLVL---NERKKWFVTIFKEIEKWNIKSILF-----------------RFKNISELGENN--KNSTISknNPTIY 964
Cdd:CHL00204   929 FKKKYFLVLkilKERTKLFLKVSKETKKWIIKSFLFlkriikelskrnpillfGLREIYELNETKkeKDSIIS--NQMIH 1006

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  965 ESPVIIHSMNWTNSSLTEKRIKDLNVKTKTIITEIEKMTNEGVVLTSEKNLNSNKTTYDAKRFELQKNILQILQRRIVRL 1044
Cdd:CHL00204  1007 ESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRRNTRL 1086

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1045 TRKSYSFFKFFMEKVYIDILLCIIGILRINIQLFLESTKKIVTKSISNKKTNAERIDKTHQSRIPFMSIIHKSC---NMT 1121
Cdd:CHL00204  1087 IRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIKKSLyniSNK 1166

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1122 NTNSENSCDVSSLSQAYVFFKLSQIQVINgyKYKLRSIFESHERSFFLKNEIKNYlFRIQGIFNSKLRHKNRSHSLMNQW 1201
Cdd:CHL00204  1167 NKNSKIFYDLSSLSQAYVFYKLSQTQVIN--LYKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQW 1243

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1202 TNWLKVHYQYDLPQSRWSRLVPQNWRNRINKHRVAQNKDLINYDSYDKTRLILYKNEQ------LVNFQKKIKKQYRYDL 1275
Cdd:CHL00204  1244 KNWLRSHYQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQNdfeansLLNQKDNFKKDYRYDL 1323

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1276 LSYKYLNYADKKNsyiygyrspsQTNKNQTISYNDNTCKKEFFDIMGDISIKNY----RVINMEKYLDRKY--------- 1342
Cdd:CHL00204  1324 LSYKSINYEDKKF----------QVNKNQEISYNYNTRKVNLFDMPEGIAINNYlgkgDILDIEKNPDRKYldwrilnfs 1393

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1343 --------------------------------------------------FDWMVMNVEIPNRSISNrkSKFWFFSKLSI 1372
Cdd:CHL00204  1394 lrkkvdieswvdtdskskkntktgvnnyqiidkidhqdfennqankkknfFDWMGMNEEILNRPISN--LEFWFFPEFVL 1471

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1373 FYDEYKKNPWIVPIKSLFLPFYGKFDILKGANEeadeyKKNPWIVPIKSLFLPFYGKfdilkgaNEEAEVDTGPLSQYLS 1452
Cdd:CHL00204  1472 LYNTYKIKPWIIPIKLLLLNLNGNENVNKKINQ-----KKKGFIPSNEKKSIEIENR-------NQEEKEPAGQGELESD 1539

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1453 ILNHAYEDSYWENGWKSIKlKEYIDID------RNDYLNDLKGEQTFLLNKYLGFHVNFDNLLHERIMNLITFNCLLIRL 1526
Cdd:CHL00204  1540 KEKKGNLESVLSNQEKNIE-EDYAESDikkrknKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRL 1618

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1527 KNLKKFFIISIKKGELSLDTMGILTDIPFTltgvrnrkEFSEKQTFSVEPLRLARKNYEQFFMYQTISLSLIHKNKRQIF 1606
Cdd:CHL00204  1619 INPREIAISSIQRGEMSLDIMMIQKNLTLT--------ELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQIN 1690

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743 1607 QINPEKSRVDKNI---TRTRNQKITGNKDKNHTDLLVPENLLSNRRRRELRILICLNPRNT----RNTINCNENKKNTGF 1679
Cdd:CHL00204  1691 QRYREKKYVDKKNfdeSITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKnavdRNSVFCNEKNVKNCG 1770

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2196262743 1680 QVLAQNKDLDIETKKLINLKFFLWPNYRLEDLACINRYWFDTQNGSRFSILRIHMYPRLKI 1740
Cdd:CHL00204  1771 QVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKI 1831
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 17-878 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 888.87  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   17 VVIVGFYYGFLTTLSIAPSYLFLIRAWVM---EEETEKQVSATTGFITGQLMMFISIYYAPMHLALSKPHTITLLTLPYL 93
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743   94 FFYFLDKNDKHYYlNYGYNNTNSMRKFSIHKVFVNNLLFQLLNPLLFPSSILIRLVNIYLFRCNNKLLFLTSSFVGWLIG 173
Cdd:pfam05758   81 LFHFFWNNHKHFF-DYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIG 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  174 HIFLMKLIGFLLVWLQQNNSInsiKSKVTIRFDKYILLQLRNYVSQIFVLFSFITFLHYLGRIPVPYF---LKGEVIKSE 250
Cdd:pfam05758  160 HILFMKWVGLVLVWIQQNNSI---RSNVLIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFtkkLKETSETEE 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  251 ENENDEIEEFDGERDSEMK-----------KDLSSYLFDEKDKTFTNIQEEEEDPL------------------------ 295
Cdd:pfam05758  237 RYESEEETDVEIETTSETKgtkqeqersteEDPSPSLFSEEGEDLDKIDETEEIRVngkdkikdefhfhfretcyknspi 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  296 --------------------------------PLVTTLFDYQRWNRPLRYIKNGHFENVVRNETSQFFFHICQSDGKERI 343
Cdd:pfam05758  317 yetsyldgnqenskleilkekkknknlfwfekPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERI 396

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  344 SFTYPPNLSTFLQIMEKKIDLFTRDKISNNELSNYWSSNHKEKRNKLINEFYKRARVLDKQFFPLDVLENRIRLCNDTNK 423
Cdd:pfam05758  397 SFTYPPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETK 476

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  424 LKYLTEIYDPFLNGSFRGQMPNSFSISI--ENEFHKTKNSILINKIHGILLSI----FEQKINPFARKSLLNEIGFFFNL 497
Cdd:pfam05758  477 KEYLPKIYDPFLNGPYRGRIKKVFSPSIinKTSRKNSLEGVWINKIHGILLSSnypeFEQKINIFDRKSLSTEIDYFLNL 556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  498 ISKFSEKSVSSLNFDKLDLFPEHEQVNIYSKEKKRKKKFLLDTLDTLDAIKNDHPNDHKIHEISKTVPRWSYSLIDELEE 577
Cdd:pfam05758  557 INEFSKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  578 L----TEDVQEEHQIRCRYADRIVIFNGQTdtfiQPGNISDTDTDDDNDSNTREITgenglfLLNYSREPDFSRDIIKGS 653
Cdd:pfam05758  637 LegenEENVAEDYQIRSRKAKRVVIFTDNQ----KNYDTYNNTKDTDNSEQKNEVA------LIRYSQQSDFRRDIIKGS 706

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  654 MRALRRKTVTWKLFQRNVYSPLFLEKIQP--FFMPDLFDDISQYWKEYFRKKG----TDNSEFLTFEKRVEEEEEAERKY 727
Cdd:pfam05758  707 MRAQRRKTVIWELFQANVHSPLFLDRIDKplFFSFDIFGLIKIIFKNWMRKKEefkiSSYTEEKTKESSKKEEDKKEDNK 786

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2196262743  728 DEEKRLKEIEEAWDSIIYGLIIRSFVILIQSIIRKYITLPSLIITKNIIRILLFQYPEWSEDFRDWKKEVHIFCTYQGVP 807
Cdd:pfam05758  787 REERARIEIAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQ 866

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2196262743  808 VSNRELPNNWFTDGLQVRILSPFVLKPWHKSKLRSPfvlkpwHKSKLrsteKKNLQNKNFWFLTACGTLVE 878
Cdd:pfam05758  867 LSETEFPKNWLTDGIQIKILFPFRLKPWHKSKLRSS------EKDLM----KKKVQKNDFCFLTVWGMETE 927
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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