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Conserved domains on  [gi|2173418524|gb|UID85525|]
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IS3 family transposase (plasmid) [Leptospira interrogans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS3 super family cl41295
IS3 family transposase;
2-34 7.55e-09

IS3 family transposase;


The actual alignment was detected with superfamily member NF033516:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 48.72  E-value: 7.55e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2173418524   2 REAQYFLFDYIErYYNRKRMHSALDDLSPVEFR 34
Cdd:NF033516  338 EEARQAIEEYIE-FYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
2-34 7.55e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 48.72  E-value: 7.55e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2173418524   2 REAQYFLFDYIErYYNRKRMHSALDDLSPVEFR 34
Cdd:NF033516  338 EEARQAIEEYIE-FYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
3-41 1.78e-08

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 47.46  E-value: 1.78e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2173418524   3 EAQYFLFDYIErYYNRKRMHSALDDLSPVEFRKKLLHNQ 41
Cdd:COG2801   272 EAREAIEEYIE-FYNHERPHSSLGYLTPAEYEKQLAAAA 309
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
2-34 7.55e-09

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 48.72  E-value: 7.55e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2173418524   2 REAQYFLFDYIErYYNRKRMHSALDDLSPVEFR 34
Cdd:NF033516  338 EEARQAIEEYIE-FYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
3-41 1.78e-08

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 47.46  E-value: 1.78e-08
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2173418524   3 EAQYFLFDYIErYYNRKRMHSALDDLSPVEFRKKLLHNQ 41
Cdd:COG2801   272 EAREAIEEYIE-FYNHERPHSSLGYLTPAEYEKQLAAAA 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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