|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_YciT |
NF040887 |
DNA-binding transcriptional regulator YciT; Involved in osmolarity control regulation |
1-246 |
1.77e-179 |
|
DNA-binding transcriptional regulator YciT; Involved in osmolarity control regulation
Pssm-ID: 468823 [Multi-domain] Cd Length: 246 Bit Score: 492.47 E-value: 1.77e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 1 MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVETRMMTHFAIKRELASRA 80
Cdd:NF040887 1 MNARQQQILQLVNDRGRVSVSELAQLTGVSEVTIRQDLNLLEKQSYLKRVHGSAVALDSDDVDTRMMTNFPLKQKLAEYA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 81 AALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFS 160
Cdd:NF040887 81 ASLVEDGETVFIEGGSTNALLARYLAERKDITIITVSHYIAHLLKDSACEVILLGGLYQKSSESVVGPLTRLCIQQVHFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 161 KAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG 240
Cdd:NF040887 161 KAFIGIDGWHPETGFTGRDMMRADVVNAVLAKGAENIVLTDSSKFGQIHPYPLGPLHQFSRVITDDGLPADYRQQLEEQG 240
|
....*.
gi 1733043981 241 LTVDIV 246
Cdd:NF040887 241 IRVDLV 246
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-247 |
1.03e-88 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 262.76 E-value: 1.03e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 1 MNA--RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVET----RMMTHFAIKR 74
Cdd:COG1349 1 MLAeeRRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPpfaeRETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 75 ELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQF 153
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNiEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 154 IQQVHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACR 233
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 1733043981 234 EQLLRSGLTVDIVP 247
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
73-225 |
1.49e-52 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 167.69 E-value: 1.49e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 73 KRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTR 151
Cdd:pfam00455 6 KRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDiEVILLGGEVRPKTGAFVGPLAE 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1733043981 152 QFIQQVHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITD 225
Cdd:pfam00455 86 EFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
4-246 |
7.40e-41 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 140.87 E-value: 7.40e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDS------EDVETRMMTHFAIKRELA 77
Cdd:NF040755 7 RREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGfipgaePSVEDKSRLNTAVKRLIA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 78 SRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQFIQQ 156
Cdd:NF040755 87 AAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGvEVLMTGGHLRRQSLSFYGDQAEQSLQN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 157 VHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQL 236
Cdd:NF040755 167 YHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQGL 246
|
250
....*....|
gi 1733043981 237 LRSGLTVDIV 246
Cdd:NF040755 247 RKLGVEVILV 256
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-246 |
1.27e-38 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 135.37 E-value: 1.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDS------EDVETRMMTHFAIKRELA 77
Cdd:PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSttpsvePSVEDKSALNTAMKRSVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 78 SRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQFIQQ 156
Cdd:PRK09802 98 KAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGvELLMTGGHLRRQSQSFYGDQAEQSLQN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 157 VHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQL 236
Cdd:PRK09802 178 YHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGL 257
|
250
....*....|
gi 1733043981 237 LRSGLTVDIV 246
Cdd:PRK09802 258 RKAGVEVILV 267
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
4-55 |
1.91e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 65.71 E-value: 1.91e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAV 55
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
8-49 |
5.68e-04 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 39.67 E-value: 5.68e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRR 49
Cdd:cd09655 144 ILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQ 185
|
|
| cas_HTH |
TIGR01884 |
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ... |
8-49 |
6.50e-04 |
|
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]
Pssm-ID: 273852 [Multi-domain] Cd Length: 203 Bit Score: 39.65 E-value: 6.50e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRR 49
Cdd:TIGR01884 148 ILEVLKATGEKSVKNIAKKLGKSLSTISRHLAELEKKGLVEQ 189
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_YciT |
NF040887 |
DNA-binding transcriptional regulator YciT; Involved in osmolarity control regulation |
1-246 |
1.77e-179 |
|
DNA-binding transcriptional regulator YciT; Involved in osmolarity control regulation
Pssm-ID: 468823 [Multi-domain] Cd Length: 246 Bit Score: 492.47 E-value: 1.77e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 1 MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVETRMMTHFAIKRELASRA 80
Cdd:NF040887 1 MNARQQQILQLVNDRGRVSVSELAQLTGVSEVTIRQDLNLLEKQSYLKRVHGSAVALDSDDVDTRMMTNFPLKQKLAEYA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 81 AALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILLGGIYQKRSESMVGPLTRQFIQQVHFS 160
Cdd:NF040887 81 ASLVEDGETVFIEGGSTNALLARYLAERKDITIITVSHYIAHLLKDSACEVILLGGLYQKSSESVVGPLTRLCIQQVHFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 161 KAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQLLRSG 240
Cdd:NF040887 161 KAFIGIDGWHPETGFTGRDMMRADVVNAVLAKGAENIVLTDSSKFGQIHPYPLGPLHQFSRVITDDGLPADYRQQLEEQG 240
|
....*.
gi 1733043981 241 LTVDIV 246
Cdd:NF040887 241 IRVDLV 246
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-247 |
1.03e-88 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 262.76 E-value: 1.03e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 1 MNA--RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSEDVET----RMMTHFAIKR 74
Cdd:COG1349 1 MLAeeRRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPpfaeRETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 75 ELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQF 153
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNiEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 154 IQQVHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACR 233
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 1733043981 234 EQLLRSGLTVDIVP 247
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
73-225 |
1.49e-52 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 167.69 E-value: 1.49e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 73 KRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTR 151
Cdd:pfam00455 6 KRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDiEVILLGGEVRPKTGAFVGPLAE 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1733043981 152 QFIQQVHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITD 225
Cdd:pfam00455 86 EFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
4-246 |
7.40e-41 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 140.87 E-value: 7.40e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDS------EDVETRMMTHFAIKRELA 77
Cdd:NF040755 7 RREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGfipgaePSVEDKSRLNTAVKRLIA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 78 SRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQFIQQ 156
Cdd:NF040755 87 AAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGvEVLMTGGHLRRQSLSFYGDQAEQSLQN 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 157 VHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQL 236
Cdd:NF040755 167 YHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQGL 246
|
250
....*....|
gi 1733043981 237 LRSGLTVDIV 246
Cdd:NF040755 247 RKLGVEVILV 256
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-246 |
1.27e-38 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 135.37 E-value: 1.27e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDS------EDVETRMMTHFAIKRELA 77
Cdd:PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSttpsvePSVEDKSALNTAMKRSVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 78 SRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQFIQQ 156
Cdd:PRK09802 98 KAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGvELLMTGGHLRRQSQSFYGDQAEQSLQN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 157 VHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDACREQL 236
Cdd:PRK09802 178 YHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGL 257
|
250
....*....|
gi 1733043981 237 LRSGLTVDIV 246
Cdd:PRK09802 258 RKAGVEVILV 267
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
4-247 |
6.61e-36 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 127.88 E-value: 6.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAV--PLDSE---DVETRMMTHfaIKRELAS 78
Cdd:PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVlnKEESDppiDHKTLINTH--KKELIAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 79 RAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPGEVILL--GGIYQKRSESMVGPLTRQFIQQ 156
Cdd:PRK10434 84 AAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILmpGGTFRKKSASFHGQLAENAFEH 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 157 VHFSKAFIGIDGWQAETGFTgrdmmRADVVNAVLEKHCEA----IILSDSSKFSAVHPYPLGPAGRFNRVITDDRLPDAC 232
Cdd:PRK10434 164 FTFDKLFIGTDGIDLNAGVT-----TFNEVYTVSKAMCNAareiILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAF 238
|
250
....*....|....*
gi 1733043981 233 REQLLRSGLTVDIVP 247
Cdd:PRK10434 239 RQALEEKGIEVIITG 253
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
4-229 |
4.96e-19 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 83.37 E-value: 4.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVpLDSEDVET----RMMTHFAIKRELASR 79
Cdd:PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAA-LPSSSVNTpwhdRKATQTEEKERIARK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 80 AAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKETPG-EVILLGGIYQKRSESMVGPLTRQFIQQVH 158
Cdd:PRK10906 85 VASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDfRIILAGGELRSRDGGIIGEATLDFISQFR 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1733043981 159 FSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDDRLP 229
Cdd:PRK10906 165 LDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPP 235
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
2-227 |
1.91e-17 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 78.69 E-value: 1.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 2 NARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPL--DSED----VETRMMTHFAIKRE 75
Cdd:PRK10411 3 AARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAKYIhrQNQDsgdpFHIRLKSHYAHKAD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 76 LASRAAALVNTGETVFIENGSSNALLARTLAERgDITIITVSSYIAH-LLKETPGEVILLGGIYQKRSESMVGPLTRQFI 154
Cdd:PRK10411 83 IAREALAWIEEGMVIALDASSTCWYLARQLPDI-NIQVFTNSHPICQeLGKRERIQLISSGGTLERKYGCYVNPSLISQL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 155 QQVHFSkAFI----GIDG----WQAETgftgrdmMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITDD 226
Cdd:PRK10411 162 KSLEID-LFIfsceGIDSsgalWDSNA-------INADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDE 233
|
.
gi 1733043981 227 R 227
Cdd:PRK10411 234 R 234
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
3-231 |
2.37e-15 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 73.19 E-value: 2.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 3 ARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLrrTHGYAVpldsedVETRMMTHFAI---------- 72
Cdd:PRK10681 7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVL--LGGYIV------LEPRSASHYLLsdqksrlvee 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 73 KRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVS--SYIAhlLKETP-GEVILLGGIYqKRSESMVGPL 149
Cdd:PRK10681 79 KRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSlnTFLA--LQEKPhCRAILCGGEF-HASNAIFKPL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 150 TRQ-FIQQVHFSKAFIGIDGWQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITdDRL 228
Cdd:PRK10681 156 DFQqTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVS-DRC 234
|
...
gi 1733043981 229 PDA 231
Cdd:PRK10681 235 PDD 237
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
4-55 |
1.91e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 65.71 E-value: 1.91e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAV 55
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAV 52
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-246 |
1.84e-13 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 67.72 E-value: 1.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 1 MNARQ--QSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLR--RTHGYAVPLDSEdVETRMMTHFAI---- 72
Cdd:PRK13509 1 MTEAQrhQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKkvRNGAEAITQQRP-RWTPMNIHQAQnhde 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 73 KRELASRAAALVNTGETVFIENGSSNALLARTLAERgDITIITVSSYIA-HLLKETPGEVILLGGIYQKRSESMVGPltr 151
Cdd:PRK13509 80 KVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGK-PVQIITNYLPLAnYLIDQEHDSVIIMGGQYNKSQSITLSP--- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 152 qfiqqvHFSKAFIGIDGWQ--AETGFTGRDMMRADVVNAVLEKHC-----EAIILSDSSKFSAVHPYPLGPAGRFNRVIT 224
Cdd:PRK13509 156 ------QGSENSLYAGHWMftSGKGLTADGLYKTDMLTAMAEQKMlsvvgKLVVLVDSSKIGERAGMLFSRADQIDMLIT 229
|
250 260
....*....|....*....|..
gi 1733043981 225 DDRLPDACREQLLRSGLTVDIV 246
Cdd:PRK13509 230 GKNADPEVLQQLEAQGVSILLV 251
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
4-60 |
8.46e-11 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 56.11 E-value: 8.46e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDSE 60
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNSST 57
|
|
| LexA |
COG1974 |
SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) [Transcription, ... |
1-54 |
8.67e-05 |
|
SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) [Transcription, Signal transduction mechanisms];
Pssm-ID: 441577 [Multi-domain] Cd Length: 199 Bit Score: 42.21 E-value: 8.67e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1733043981 1 MNARQQSILQVVIDKGRM-----SVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYA 54
Cdd:COG1974 4 LTKRQREILDFIKEYIRErgyppSQREIAEALGLSSSAVHRHLKALEKKGYLRRDPGKS 62
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
4-50 |
1.15e-04 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 42.22 E-value: 1.15e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRT 50
Cdd:COG2345 14 TRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERE 60
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
8-49 |
5.68e-04 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 39.67 E-value: 5.68e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRR 49
Cdd:cd09655 144 ILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQ 185
|
|
| HTH_Mga |
pfam08280 |
M protein trans-acting positive regulator (MGA) HTH domain; Mga is a DNA-binding protein that ... |
4-41 |
6.22e-04 |
|
M protein trans-acting positive regulator (MGA) HTH domain; Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions.
Pssm-ID: 311953 [Multi-domain] Cd Length: 59 Bit Score: 37.21 E-value: 6.22e-04
10 20 30
....*....|....*....|....*....|....*...
gi 1733043981 4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLL 41
Cdd:pfam08280 6 RKLKLLELLTENKSITLDELAEELGLSELTLQSDIHEL 43
|
|
| cas_HTH |
TIGR01884 |
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ... |
8-49 |
6.50e-04 |
|
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]
Pssm-ID: 273852 [Multi-domain] Cd Length: 203 Bit Score: 39.65 E-value: 6.50e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRR 49
Cdd:TIGR01884 148 ILEVLKATGEKSVKNIAKKLGKSLSTISRHLAELEKKGLVEQ 189
|
|
| Lrp |
COG1522 |
DNA-binding transcriptional regulator, Lrp family [Transcription]; |
8-85 |
8.87e-04 |
|
DNA-binding transcriptional regulator, Lrp family [Transcription];
Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 38.61 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRrthGYAVPLDSEDV--ETRMMTHFAIKRELASRAAALVN 85
Cdd:COG1522 10 ILRLLQEDGRLSFAELAERVGLSESTVLRRVRRLEEAGVIR---GYGAVVDPEKLglGVTAFVEVKVPPHRLDEFAEALA 86
|
|
| HTH_ASNC |
smart00344 |
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ... |
8-62 |
1.49e-03 |
|
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)
Pssm-ID: 214628 [Multi-domain] Cd Length: 108 Bit Score: 37.11 E-value: 1.49e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1733043981 8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRrthGYAVPLDSEDV 62
Cdd:smart00344 8 ILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIK---GYTAVLNPKKL 59
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
6-43 |
2.09e-03 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 35.49 E-value: 2.09e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1733043981 6 QSILQVVID-KGRMSVADLAKMTGVSEVTIRQDLNLLEK 43
Cdd:pfam08279 1 LQILQLLLEaRGPISGQELAEKLGVSRRTIRRDIKILEE 39
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
19-52 |
3.16e-03 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 35.12 E-value: 3.16e-03
10 20 30
....*....|....*....|....*....|....
gi 1733043981 19 SVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHG 52
Cdd:cd07377 27 SERELAEELGVSRTTVREALRELEAEGLVERRPG 60
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
19-52 |
4.72e-03 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 37.15 E-value: 4.72e-03
10 20 30
....*....|....*....|....*....|....
gi 1733043981 19 SVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHG 52
Cdd:COG2188 31 SERELAEEFGVSRMTVRKALDELVEEGLLERRQG 64
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
3-42 |
5.10e-03 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 37.37 E-value: 5.10e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1733043981 3 ARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLE 42
Cdd:COG2378 5 ERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALR 44
|
|
| |
