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Conserved domains on  [gi|1732907483|gb|TYR86050|]
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phosphate ABC transporter permease PstC [Klebsiella pneumoniae]

Protein Classification

phosphate ABC transporter permease subunit PstC( domain architecture ID 10793554)

phosphate ABC transporter permease subunit PstC is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for phosphate; ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment; the captured solute is delivered to a gated translocation pathway formed by the two TMs

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-319 0e+00

phosphate ABC transporter permease PstC;


:

Pssm-ID: 183070  Cd Length: 319  Bit Score: 578.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483   1 MAATKPAFTPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTKEWDAPNEIFGALVPIYGTLV 80
Cdd:PRK11275    1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  81 TSFIALLIAVPVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNVLSTIPFVGAL 160
Cdd:PRK11275   81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 161 FAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275  161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 241 ETMAVTFIIGNTYQLDSISLYMPGNSITSALANEFAEAETGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR 319
Cdd:PRK11275  241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-319 0e+00

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 578.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483   1 MAATKPAFTPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTKEWDAPNEIFGALVPIYGTLV 80
Cdd:PRK11275    1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  81 TSFIALLIAVPVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNVLSTIPFVGAL 160
Cdd:PRK11275   81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 161 FAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275  161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 241 ETMAVTFIIGNTYQLDSISLYMPGNSITSALANEFAEAETGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR 319
Cdd:PRK11275  241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
13-317 4.57e-114

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 332.05  E-value: 4.57e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  13 KKGDMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFA-FLWTKEWD--APNEIFGALVPIYGTLVTSFIALLIA 89
Cdd:COG0573    14 RLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLLeFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIALLIA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  90 VPVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQepvgnvlstipfvgalfaGPAFGIG 169
Cdd:COG0573    94 VPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPPSGFS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 170 ILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFII 249
Cdd:COG0573   156 LLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVA 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 250 GNTYQLdSISLYMPGNSITSALANEFAEAETG-LHVAALMELGLILFVITFIVLAASKFMIMRLAKNEG 317
Cdd:COG0573   236 GNAPQI-PFSLFDPGRTLTALIALEFGEAPFGsLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
16-311 4.35e-90

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 270.68  E-value: 4.35e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  16 DMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFG-FAFLWTKEWDAPN----EIFGALVPIYGTLVTSFIALLIAV 90
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGiLNFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  91 PVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNVLSTIPFvgalfagpaFGIGI 170
Cdd:TIGR02138  81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPL---------FGGPI 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1732907483 251 NTYQLDSISLYMPGNSITSALANEFAEAETG-LHVAALMELGLILFVITFIVLAASKFMIMR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
75-272 1.28e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.68  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  75 IYGTLVTSFIALLIAVPVSFGIALFLTELSPaWLKRPLGIAIELLAAIPSIVYGMWGLFIFaplfatyfqepvgnvlsti 154
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLF------------------- 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 155 pfvGALFAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLG 234
Cdd:cd06261    61 ---GVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1732907483 235 LGRALGETMAVTFIIGNTYQLDSISLYMPGNSITSALA 272
Cdd:cd06261   138 FARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDL 175
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
150-252 1.74e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 150 VLSTIPFVGALFAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIG 229
Cdd:pfam00528  32 SFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILT 111
                          90       100
                  ....*....|....*....|...
gi 1732907483 230 GVMLGLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 112 GLALAFGGALGGAVLLEFLGSWP 134
 
Name Accession Description Interval E-value
pstC PRK11275
phosphate ABC transporter permease PstC;
1-319 0e+00

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 578.96  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483   1 MAATKPAFTPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTKEWDAPNEIFGALVPIYGTLV 80
Cdd:PRK11275    1 MAATKPAFNAPGKKGDIIFSALVKLAALITLLLLGGIIVSLIISSWPSIQKFGLSFLWTKEWDAPNDIYGALVPIYGTLV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  81 TSFIALLIAVPVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNVLSTIPFVGAL 160
Cdd:PRK11275   81 TSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFATYFQEPVGNVLSNIPIVGAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 161 FAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
Cdd:PRK11275  161 FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALG 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 241 ETMAVTFIIGNTYQLDSISLYMPGNSITSALANEFAEAETGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR 319
Cdd:PRK11275  241 ETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAKNEGAR 319
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
13-317 4.57e-114

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 332.05  E-value: 4.57e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  13 KKGDMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFA-FLWTKEWD--APNEIFGALVPIYGTLVTSFIALLIA 89
Cdd:COG0573    14 RLGDRLFRGLLLLAALLSILILLLIVLFLLIESLPAFQEVGLLeFLTGTEWNpvSSNGEFGILPLIVGTLLVSLIALLIA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  90 VPVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQepvgnvlstipfvgalfaGPAFGIG 169
Cdd:COG0573    94 VPLGLGIAIFLSEYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFP------------------WPPSGFS 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 170 ILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFII 249
Cdd:COG0573   156 LLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETMAVLMVA 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 250 GNTYQLdSISLYMPGNSITSALANEFAEAETG-LHVAALMELGLILFVITFIVLAASKFMIMRLAKNEG 317
Cdd:COG0573   236 GNAPQI-PFSLFDPGRTLTALIALEFGEAPFGsLHYSALFALGLVLFVITLLVNLLARLIVRRYREKYG 303
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
16-311 4.35e-90

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 270.68  E-value: 4.35e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  16 DMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFG-FAFLWTKEWDAPN----EIFGALVPIYGTLVTSFIALLIAV 90
Cdd:TIGR02138   1 EKIFKGLLLFSAVIIVLVLLLIVLFLLYEAIPAFEKNGiLNFLTGTVWDPGSgpvqEQYGALPLIVGTLITSLIALLIAV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  91 PVSFGIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNVLSTIPFvgalfagpaFGIGI 170
Cdd:TIGR02138  81 PVGIGIAIFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLKPHFQPFLGSNLGLIPL---------FGGPI 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 171 LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIG 250
Cdd:TIGR02138 152 LTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIG 231
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1732907483 251 NTYQLDSISLYMPGNSITSALANEFAEAETG-LHVAALMELGLILFVITFIVLAASKFMIMR 311
Cdd:TIGR02138 232 NVFPISPLSLFDPGTTITSLIANQFGEASGGsVHTSALFALGLVLFVITLLVNILARYIVRR 293
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
29-255 4.33e-34

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 125.15  E-value: 4.33e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  29 IVLLMLGGIIVSLIISSWPSIqkfGFAFLwTKEWDAPNEIFGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELSPA-W 107
Cdd:COG0581     1 LALLPLVWILGTVLVKGLPAL---SWEFL-TSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGgR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 108 LKRPLGIAIELLAAIPSIVYGmwgLFIFApLFATYFQepvgnvlstipfvgalfagpaFGIGILAAGVILAIMIIPYIAA 187
Cdd:COG0581    77 LARLIRFAIDVLAGVPSIVYG---LFGYA-LFVLTLG---------------------LGFSLLAGALALALLMLPVVIR 131
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1732907483 188 VMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYQL 255
Cdd:COG0581   132 TTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGVSPFL 199
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
16-253 1.16e-26

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 105.78  E-value: 1.16e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  16 DMIFSALVKLAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTkewdaPNEIFGALVP-IYGTLVTSFIALLIAVPVSF 94
Cdd:TIGR00974   1 DKIFTFISLLSALLALLPLIWILWYILIKGLPALNLEFFTKSPT-----PTGAEGGIGPaIVGTLLLTLLAIVIAVPLGI 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  95 GIALFLTELS-PAWLKRPLGIAIELLAAIPSIVYGmwgLFIFAPLFATYFqepvgnvlstipfvgalfagpAFGIGILAA 173
Cdd:TIGR00974  76 GAAIYLAEYAnGSRFTKIIRFAVDILAGVPSIVVG---LFGYGFFVLTYL---------------------GGGFSLLAG 131
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 174 GVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTY 253
Cdd:TIGR00974 132 ALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSA 211
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
18-253 1.33e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 69.39  E-value: 1.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  18 IFSALVKLAALIVLLMLGGIIVSLIISSWpsiqKFGFAFLWTKEWDApnEIFGALvpiYGTLVTSFIALLIAVPVSFGIA 97
Cdd:COG0555     8 GFGLTLGLTLLYLSLIVLLPLAALVLKAA----GLGWAEFWAVLTSP--RVLAAL---KLSLGTALIAALINLVFGLPLA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  98 LFLTELsPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLfatyfqepvgnvlstiPFVGALFAgpAFGIGIL--AAGV 175
Cdd:COG0555    79 WVLVRY-RFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN----------------GWLGQLLA--PLGIKVAftPLGI 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 176 ILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTY 253
Cdd:COG0555   140 VLAQTFVslPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLP 219
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
75-272 1.28e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 62.68  E-value: 1.28e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  75 IYGTLVTSFIALLIAVPVSFGIALFLTELSPaWLKRPLGIAIELLAAIPSIVYGMWGLFIFaplfatyfqepvgnvlsti 154
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLF------------------- 60
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 155 pfvGALFAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLG 234
Cdd:cd06261    61 ---GVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1732907483 235 LGRALGETMAVTFIIGNTYQLDSISLYMPGNSITSALA 272
Cdd:cd06261   138 FARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDL 175
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
16-315 1.75e-08

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 54.35  E-value: 1.75e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  16 DMIFSALVKLAALIVLLMLGGIIVSLIISS-----WPSIQKFGFAFLWTKE-WDAPNEIFGALVPIYGTLVTSFIALLIA 89
Cdd:COG1177     2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSfndswFLTFPPEGFTLRWYAElFSDPRLLDALLNSLLIALLSTLLATVLG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  90 VPVSFGIALFltelsPAWLKRPLGIAIELLAAIPSIVYGMwGLFIFaplfatyfqepvgnvLSTIPFVGALFagpafgig 169
Cdd:COG1177    82 TPAALALARY-----RFRGRRLLLALLLLPLVVPGIVLGV-ALLLL---------------FSALGLSGGLW-------- 132
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 170 ilaaGVILA--IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTF 247
Cdd:COG1177   133 ----GLILAhvVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLF 208
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1732907483 248 IIGNTYQLDSISLYmpgNSITSALANEfaeaetglhVAAlmeLGLILFVITFIVLAASKFMIMRLAKN 315
Cdd:COG1177   209 LAGPGVTTLPVYIY---SMIRRGISPE---------INA---LSTLLILLSLLLLLLAERLRRRGERR 261
pstA PRK11268
phosphate ABC transporter permease PstA;
57-247 4.56e-08

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 53.53  E-value: 4.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  57 LWTKEWDAPNEIFGALV-PIYGTLVTSFIALLIAVPVSFGIALFLTELSP-AWLKRPLGIAIELLAAIPSIVYGmwgLFI 134
Cdd:PRK11268   64 LFTEMTPPPNTAGGGLAnAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRkSWLAEVIRFINDILLSAPSIVVG---LFV 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 135 FApLFATYFQEpvgnvlstipfvgalFAGPAfgiGILAagviLAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEV 214
Cdd:PRK11268  141 YT-IVVAQMEH---------------FSGWA---GVIA----LALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKM 197
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1732907483 215 IWRIVLPFTKNGVIGGVMLGLGRALGETMAVTF 247
Cdd:PRK11268  198 ISAITLKASVSGIMTGVLLAIARIAGETAPLLF 230
COG4590 COG4590
ABC-type uncharacterized transport system, permease component [General function prediction ...
208-301 1.08e-07

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443647 [Multi-domain]  Cd Length: 757  Bit Score: 53.31  E-value: 1.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 208 GCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYQLD-SIslyMPGNSITSA-LANEFAEAETG---- 281
Cdd:COG4590   646 GATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGETMIVLMATGNTPVMDfNI---FEGMRTLSAnIAVEMPESEVGsthy 722
                          90       100
                  ....*....|....*....|..
gi 1732907483 282 --LHVAAlmelgLILFVITFIV 301
Cdd:COG4590   723 rvLFLAA-----LVLFVFTFVF 739
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-241 1.44e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.47  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  25 LAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWtkeWDAPNEIFGALVPIYGTLVTSFIALLIAVPVSFGIAlFLTELS 104
Cdd:COG1178   293 LCLLLVLLGLLLPLLALLLWSLTKALDDNLTLDN---YRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLA-YLVRRR 368
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 105 PAWLKRPLGIAIELLAAIPSIVYGMwGLFIFAplfatyfqepvgnvlstIPFVGALFAGPAFGIgILAagviLAIMIIPY 184
Cdd:COG1178   369 RGRLARLLDRLAMLPYAVPGIVLGL-GLLLLF-----------------NRPLPLLLYGTLAIL-VLA----YVVRFLPF 425
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1732907483 185 IAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGE 241
Cdd:COG1178   426 ALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE 482
cysT CHL00187
sulfate transport protein; Provisional
78-251 1.55e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 48.47  E-value: 1.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  78 TLVTSFIALLIAVPVSFGIALFLTELSpAWLKRPLGIAIELLAAIPSIVYGMwglfIFAPLFATyfQEPVGNVLSTipfv 157
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYN-FPGKRLLDAAVDLPFALPTSVAGL----TLATVYGD--NGWIGHLLSH---- 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 158 galfagpaFGIGIL--AAGVILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVML 233
Cdd:CHL00187  129 --------LGIQIVftKLGVLLAMIFVsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLAL 200
                         170
                  ....*....|....*...
gi 1732907483 234 GLGRALGETMAVTFIIGN 251
Cdd:CHL00187  201 TFSRAIGEYGSIVIISSN 218
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
78-253 3.38e-06

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 47.39  E-value: 3.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  78 TLVTSFIALLIAVPVSFGIALFLTELSPAwLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLfatyfqepvgnvlstiPFV 157
Cdd:TIGR01581  26 SLATSLASLLLAVIIGIPTAYVLARVRFP-LKKLLDTLLDLPMVLPPLVAGLALLLLFGRN----------------GLL 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 158 GALFAGPAFGIGILAAGVILAIMII--PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGL 235
Cdd:TIGR01581  89 GPYLEAAGIQVIFSTLGVVLAQTFVasPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168
                         170
                  ....*....|....*...
gi 1732907483 236 GRALGETMAVTFIIGNTY 253
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQ 186
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
152-251 5.82e-06

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 47.06  E-value: 5.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 152 STIPFVGALFAGpaFGIGI----LAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGV 227
Cdd:PRK10971  120 SVNGWYGEWLAK--FDIKVtytwLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPAL 197
                          90       100
                  ....*....|....*....|....
gi 1732907483 228 IGGVMLGLGRALGETMAVTFIIGN 251
Cdd:PRK10971  198 LAGVALSFTRSLGEFGAVIFIAGN 221
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-311 1.25e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  25 LAALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTKEWDApneifgalvpIYGTLVTSFIALLIAVPVSFGIAlFLTELS 104
Cdd:COG1178    16 LALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRA----------LGNTLLLALLVTLLSLLLGVPLA-WLLART 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 105 PAWLKRPLGIAIELLAAIPSIV--YGMWGLFIFAPLFATYFQEPVGNVLSTIpfvgalfagpafgIGILAAGVILAIMII 182
Cdd:COG1178    85 DFPGRRLLRWLLLLPLALPPYVvaLAWIALFGPNGLLNTLLRALFGLEPPDI-------------YGLGGIILVLVLFNY 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 183 PYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGEtMAVTFIIGNTYQLDSISLYm 262
Cdd:COG1178   152 PYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLAD-FGTPLVLGGGYTTLTTAIY- 229
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1732907483 263 pgnsitSALANEFAeaetgLHVAALmeLGLILFVITFIVLAASKFMIMR 311
Cdd:COG1178   230 ------QAWLGDFD-----LGAAAA--LALVLLLLVLLLLLLERRLRRR 265
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
150-252 1.74e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 41.52  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 150 VLSTIPFVGALFAGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIG 229
Cdd:pfam00528  32 SFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILT 111
                          90       100
                  ....*....|....*....|...
gi 1732907483 230 GVMLGLGRALGETMAVTFIIGNT 252
Cdd:pfam00528 112 GLALAFGGALGGAVLLEFLGSWP 134
modB PRK09421
molybdate ABC transporter permease subunit;
178-318 2.80e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.45  E-value: 2.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 178 AIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNtyqlds 257
Cdd:PRK09421  100 AVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATITFVSN------ 173
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1732907483 258 islyMPGNSITSALAnEFAEAETGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGA 318
Cdd:PRK09421  174 ----IPGETQTIPSA-MYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
112-239 1.50e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 112 LGIAIELLAAIPsivygmWGLFIFAPLFATYFQEPVGNVLSTIPFVG-ALFAGPAFGIGILAAGVILAIMIIPYIAAVMR 190
Cdd:COG0600    72 LGFALAALLGVP------LGLLLGLSRLLRRLLDPLLVFLRPIPPLAlAPLLILWFGIGEASKIFVIFLGAFFPILLNTA 145
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1732907483 191 DVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRAL 239
Cdd:COG0600   146 AGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
26-233 4.57e-03

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 38.20  E-value: 4.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483  26 AALIVLLMLGGIIVSLIISSWPSIQKFGFAFLWTkeWDAPNEIFGAlvPIYG-----TLVTSFIALLIAVPVSFGIALFL 100
Cdd:COG1176    19 LLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFT--LENYARLFTD--PLYLkvllrTLWIALLTTLICLLLGYPIAYFL 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1732907483 101 TELSPAWlKRPLGIAIELLAAIPSIV--YGMwgLFIFAPlfatyfQEPVGNVLSTIPFVGA----LFAGPAFGIGILAag 174
Cdd:COG1176    95 ARAPPRW-RNLLLLLVILPFWTSFLVrtYAW--IVLLGR------NGLLNSLLLALGLIDEplrlLYTEFAVVIGLVY-- 163
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1732907483 175 VILAIMIIPYIAAvmrdvFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVML 233
Cdd:COG1176   164 VYLPFMVLPLYAA-----LEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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