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Conserved domains on  [gi|1707431567|gb|TRZ04514|]
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hypothetical protein DNTS_035090 [Danionella cerebrum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-104 9.30e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.47  E-value: 9.30e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPD------NATTYVHKGLLQLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI 75
Cdd:TIGR00990 490 FDTAIELEKEtkpmymNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569

                          90       100
                  ....*....|....*....|....*....
gi 1707431567  76 NLAKSEMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:TIGR00990 570 ELARTEGELVQAISYAEATRTQIQVQEDY 598
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-104 9.30e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.47  E-value: 9.30e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPD------NATTYVHKGLLQLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI 75
Cdd:TIGR00990 490 FDTAIELEKEtkpmymNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569

                          90       100
                  ....*....|....*....|....*....
gi 1707431567  76 NLAKSEMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:TIGR00990 570 ELARTEGELVQAISYAEATRTQIQVQEDY 598
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-104 5.10e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 5.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLqLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG0457    65 YEQALELDPDDAEALNNLGLA-LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143

                          90       100
                  ....*....|....*....|...
gi 1707431567  82 MEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:COG0457   144 ADALYNLGIALEKLGRYEEALEL 166
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 27-81 2.79e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 35.68  E-value: 2.79e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1707431567  27 KQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-104 9.30e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.47  E-value: 9.30e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPD------NATTYVHKGLLQLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI 75
Cdd:TIGR00990 490 FDTAIELEKEtkpmymNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569

                          90       100
                  ....*....|....*....|....*....
gi 1707431567  76 NLAKSEMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:TIGR00990 570 ELARTEGELVQAISYAEATRTQIQVQEDY 598
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-104 5.10e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 5.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLqLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG0457    65 YEQALELDPDDAEALNNLGLA-LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143

                          90       100
                  ....*....|....*....|...
gi 1707431567  82 MEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:COG0457   144 ADALYNLGIALEKLGRYEEALEL 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-77 1.34e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 1.34e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINL 77
Cdd:COG0457    31 YEKALELDPDDAEALYNLGLAYLR-LGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL 105
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-104 1.62e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 1.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKS 80
Cdd:COG4783    26 LLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE 104

                          90       100
                  ....*....|....*....|....
gi 1707431567  81 EMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:COG4783   105 HPEAYLRLARAYRALGRPDEAIAA 128
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-93 2.00e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 2.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG4785    96 FDQALELDPDLAEAYNNRGLAYLL-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174

                          90
                  ....*....|..
gi 1707431567  82 MEMAHLYSLCDA 93
Cdd:COG4785   175 PERALWLYLAER 186
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-104 2.77e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 2.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKS 80
Cdd:COG2956   132 VLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210

                          90       100
                  ....*....|....*....|....
gi 1707431567  81 EMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:COG2956   211 YLPALPRLAELYEKLGDPEEALEL 234
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-87 3.07e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 3.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG4235    40 YEKALRLDPDNADALLDLAEALLA-AGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118


                  ....*.
gi 1707431567  82 MEMAHL 87
Cdd:COG4235   119 APARLL 124
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
6-77 1.56e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 1.56e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1707431567   6 IELEPDNATTYVHKGLLqLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINL 77
Cdd:COG0457     1 LELDPDDAEAYNNLGLA-YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL 71
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-77 4.58e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 4.58e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1707431567   7 ELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINL 77
Cdd:COG4785    67 LALPDLAQLYYERGVAYDS-LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1-80 6.58e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 6.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELiSKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKS 80
Cdd:COG3063    14 YYEKALELDPDNADALNNLGLLLLE-QGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-79 7.81e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 7.81e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAK 79
Cdd:COG0457    98 DYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-79 1.00e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 1.00e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAK 79
Cdd:COG5010    77 LEQALQLDPNNPELYYNLALLYSR-SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 7-77 1.15e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.66  E-value: 1.15e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1707431567   7 ELEPDNATTYVHKGLLQLqWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINL 77
Cdd:TIGR00990 325 KLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-88 1.38e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI----N 76
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALkldpD 176

                          90
                  ....*....|..
gi 1707431567  77 LAKSEMEMAHLY 88
Cdd:COG2956   177 CARALLLLAELY 188
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 24-104 7.90e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 7.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567  24 LQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSEMEMAHLYSLCDAAYAQTEVAKK 103
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                  .
gi 1707431567 104 Y 104
Cdd:COG5010   144 A 144
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 22-104 1.95e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567  22 LQLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSEMEMAHLYSLCDAAYAQTEVA 101
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91


                  ...
gi 1707431567 102 KKY 104
Cdd:COG4783    92 LAL 94
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 2-98 1.96e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATtyVHKGLLQLQWKQDLEMGLELISKAIEI-DNKCDFAyETMGTIEVQRGNLDKAIDMFNKAINLAKS 80
Cdd:TIGR02917 793 YQTVVKKAPDNAV--VLNNLAWLYLELKDPRALEYAERALKLaPNIPAIL-DTLGWLLVEKGEADRALPLLRKAVNIAPE 869

                          90
                  ....*....|....*...
gi 1707431567  81 EMEMAHLYSLcdaAYAQT 98
Cdd:TIGR02917 870 AAAIRYHLAL---ALLAT 884
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-97 2.92e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.44  E-value: 2.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1707431567  21 LLQLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLaKSEMEMAHLySLCDAAYAQ 97
Cdd:COG3914    85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL-NPDFAEAYL-NLGEALRRL 159
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-88 3.23e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 3.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG2956    31 LEEALELDPETVEAHLALGNLYRR-RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD 109

                          90
                  ....*....|.
gi 1707431567  82 ME----MAHLY 88
Cdd:COG2956   110 AEalrlLAEIY 120
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 19-88 6.13e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.40  E-value: 6.13e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1707431567  19 KGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE----MEMAHLY 88
Cdd:COG2956    14 KGLNYLL-NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRaealLELAQDY 86
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-104 6.31e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.40  E-value: 6.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKS 80
Cdd:COG2956    64 IHQKLLERDPDRAEALLELAQDYLK-AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                          90       100
                  ....*....|....*....|....
gi 1707431567  81 EMEMAHLYSLCDAAYAQTEVAKKY 104
Cdd:COG2956   143 NAHAYCELAELYLEQGDYDEAIEA 166
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-90 6.63e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.40  E-value: 6.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLE-QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                  ....*....
gi 1707431567  82 MEMAHLYSL 90
Cdd:COG2956   246 DLLLALADL 254
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-78 8.15e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 37.28  E-value: 8.15e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLA 78
Cdd:COG3914   101 YRRALALNPDNAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-78 1.65e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 35.55  E-value: 1.65e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707431567   1 MYDKCIELEPDNATTYVHKGLLQLQwKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLA 78
Cdd:COG4783    60 LLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 3-75 2.73e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 35.83  E-value: 2.73e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1707431567   3 DKCIELEPDNATTYVHKGLLqLQWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI 75
Cdd:TIGR02917 455 KKLEKKQPDNASLHNLLGAI-YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 27-81 2.79e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 35.68  E-value: 2.79e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1707431567  27 KQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAINLAKSE 81
Cdd:cd24142    13 QGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-75 2.80e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 35.73  E-value: 2.80e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1707431567   2 YDKCIELEPDNATTYVHKGLLQLqWKQDLEMGLELISKAIEIDNKCDFAYETMGTIEVQRGNLDKAIDMFNKAI 75
Cdd:TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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