|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-215 |
1.33e-97 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 286.57 E-value: 1.33e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-RELAEPLRTVGAVLE 80
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVaRDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKeareRIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-206 |
1.91e-96 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 282.57 E-value: 1.91e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 162 GIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03268 161 GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-214 |
2.24e-78 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 238.22 E-value: 2.24e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT-VGAVL 79
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRqIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRNHLRVLAAAAGLS----PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYGLFdeelKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 156 NGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG4555 161 NGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-292 |
1.06e-72 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 225.37 E-value: 1.06e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRelAEPLRTVGAVLE 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD--PEDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAeakrRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTvQAAGATRVR-SPRADELLAR 235
Cdd:COG4152 159 GLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIR-RQFGRNTLRlEADGDAGWLR 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 236 LRAGGIDAEPTEAGA---LAVHAPPERVGDLAAEAGiPLHELVAEKGSLEEAFLELTTEP 292
Cdd:COG4152 238 ALPGVTVVEEDGDGAelkLEDGADAQELLRALLARG-PVREFEEVRPSLNEIFIEVVGEK 296
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-205 |
1.45e-70 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 215.72 E-value: 1.45e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-RELAEPLRTVGAVLE 80
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIkKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRvlaaaaglspgrvdevlaevelsgaakrrvggYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:cd03230 81 EPSLYENLTVRENLK--------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 161 EGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:cd03230 129 ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
2-205 |
2.81e-69 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 214.19 E-value: 2.81e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRElaEPLRTVGAVLEA 81
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR--KDLHKIGSLIES 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1671887361 162 GIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:TIGR03740 159 GIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
9-290 |
1.22e-61 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 197.23 E-value: 1.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 9 KRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGrrY---RELAEPLRTVGAVLEASNYH 85
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG--YdvvREPRKVRRSIGIVPQYASVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 86 PARSGRNHLRVLAAAAGLS----PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:TIGR01188 79 EDLTGRENLEMMGRLYGLPkdeaEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 162 GIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGAT-RVRSPRADELLARLRAGG 240
Cdd:TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTlESRPRDIQSLKVEVSMLI 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 241 IDAEPTEAGALAVHAPPERV------GD--------LAAEAGIPLHELVAEKGSLEEAFLELTT 290
Cdd:TIGR01188 239 AELGETGLGLLAVTVDSDRIkilvpdGDetvpeiveAAIRNGIRIRSISTERPSLDDVFLKLTG 302
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-214 |
2.26e-60 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 191.43 E-value: 2.26e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR-YRELAEPLRTVGAVLE 80
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDvVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLsPG-----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGV-PGaerreRIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 156 NGLDP---EGI-RWLRNFLRSFagrGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03265 160 IGLDPqtrAHVwEYIEKLKEEF---GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-207 |
9.38e-55 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 176.79 E-value: 9.38e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-RRYRELAEPLRTV 75
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGfDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEASNYHPARSGRNHLRVLAAAAGLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGdeltARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-208 |
3.15e-54 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 175.16 E-value: 3.15e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryRELAEPLRTVGAVLEA 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK--PLDIAARNRIGYLPEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNHLRVLAAAAGLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03269 79 RGLYPKMKVIDQLVYLAQLKGLKKeearRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 158 LDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-208 |
2.42e-51 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 167.76 E-value: 2.42e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGrITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLR-TVGAVLE 80
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRrRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKevkaRVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 157 GLDP-EGIRwLRNFLRSfAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03264 160 GLDPeERIR-FRNLLSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-215 |
7.23e-49 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 161.90 E-value: 7.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA--TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYR-ELAEPLRTVGAV 78
Cdd:cd03263 1 LQIRNLTKTYKKGtkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRtDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPARSGRNHLRVLAAAAGLSPGRVDEV----LAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEP 154
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEvellLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 155 ANGLDPEGIRWLRNFLRSfAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:cd03263 161 TSGLDPASRRAIWDLILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-185 |
6.61e-47 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 156.10 E-value: 6.61e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLR-TVGAVL 79
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRrRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRNHLRVLAAAAGLSPGR--VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:COG4133 82 HADGLKPELTVRENLRFWAALYGLRADReaIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTA 161
|
170 180
....*....|....*....|....*...
gi 1671887361 158 LDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:COG4133 162 LDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-213 |
3.84e-46 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 155.63 E-value: 3.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrELAEPLRTVGAV-- 78
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGK---PPRRARRRIGYVpq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYH-PAR------SGR-NHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:COG1121 83 RAEVDWDfPITvrdvvlMGRyGRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 151 LDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGkLVAHQSVAE 213
Cdd:COG1121 163 LDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPEE 224
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-207 |
1.33e-45 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 154.03 E-value: 1.33e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 9 KRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR-YRELAEPLRTVGAVLEASNYH-- 85
Cdd:cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVpWKRRKKFLRRIGVVFGQKTQLww 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 86 --PARSGrnhLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:cd03267 109 dlPVIDS---FYLLAAIYDLPPArfkkRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1671887361 160 PEGIRWLRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03267 186 VVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-214 |
8.30e-45 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 154.47 E-value: 8.30e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA---------------------TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAT 59
Cdd:COG4586 1 IIEVENLSKTYRVYekepglkgalkglfrreyrevEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 60 VSGRR-YRELAEPLRTVGAVLeasnyhparsG-RNHL----------RVLAAAAGLSPG----RVDEvLAEV-ELSGAAK 122
Cdd:COG4586 81 VLGYVpFKRRKEFARRIGVVF----------GqRSQLwwdlpaidsfRLLKAIYRIPDAeykkRLDE-LVELlDLGELLD 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 123 RRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIH 201
Cdd:COG4586 150 TPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVIVID 229
|
250
....*....|...
gi 1671887361 202 RGKLVAHQSVAEL 214
Cdd:COG4586 230 HGRIIYDGSLEEL 242
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-214 |
3.90e-44 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 149.79 E-value: 3.90e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRTVGAV 78
Cdd:COG1122 1 IELENLSFSYPGGTpALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKdiTKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEasnyHP-------------ARSGRNHlrvlaaaaGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAA 141
Cdd:COG1122 81 FQ----NPddqlfaptveedvAFGPENL--------GLPREeireRVEEALELVGLEHLADRPPHELSGGQKQRVAIAGV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1122 149 LAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
3-204 |
7.71e-42 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 143.38 E-value: 7.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE--LAEPLRTVGAV 78
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKlsLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEasnyHPAR-------------SGRNhlrvlaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAA 141
Cdd:cd03225 81 FQ----NPDDqffgptveeevafGLEN--------LGLPEEeieeRVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-214 |
2.21e-41 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 144.95 E-value: 2.21e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT-VGAVLE 80
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQrVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAaaraLVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-208 |
1.91e-40 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 139.98 E-value: 1.91e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrELAEPLRTVGAV---L 79
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK---PLEKERKRIGYVpqrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPAR------SGR-NHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:cd03235 78 SIDRDFPISvrdvvlMGLyGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRgKLVAH 208
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVAS 212
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
2-213 |
5.53e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 139.11 E-value: 5.53e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR-----ATVSGRRYRELA------- 69
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSvlfdgEDITGLPPHEIArlgigrt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 -------------EPLRTVGAVLEASNYHPARSGRNHLRVLAaaaglspgRVDEVLAEVELSGAAKRRVGGYSLGMRQRL 136
Cdd:cd03219 81 fqiprlfpeltvlENVMVAAQARTGSGLLLARARREEREARE--------RAEELLERVGLADLADRPAGELSYGQQRRL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAE 213
Cdd:cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-213 |
5.69e-40 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 139.45 E-value: 5.69e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----------------------TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRA 58
Cdd:COG1134 4 MIEVENVSKSYRLYhepsrslkelllrrrrtrreefWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 59 TVSGRryrelaeplrtVGAVLE-ASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMR 133
Cdd:COG1134 84 EVNGR-----------VSALLElGAGFHPELTGRENIYLNGRLLGLSRKEIDEKFDEIvefaELGDFIDQPVKTYSSGMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 134 QRL--SVAAALlgEPELLVLDEpangldpegirWL-----------RNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVII 200
Cdd:COG1134 153 ARLafAVATAV--DPDILLVDE-----------VLavgdaafqkkcLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWL 219
|
250
....*....|...
gi 1671887361 201 HRGKLVAHQSVAE 213
Cdd:COG1134 220 EKGRLVMDGDPEE 232
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-204 |
8.83e-39 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 133.52 E-value: 8.83e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaeplrtvgavleas 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL-------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 83 nyhPARSGRNHLRVLaaaaglspgrvdevlaeVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLDPEG 162
Cdd:cd00267 67 ---PLEELRRRIGYV-----------------PQLSG-----------GQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1671887361 163 IRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:cd00267 116 RERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-208 |
2.11e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 134.57 E-value: 2.11e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVL-E 80
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFqD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRN---HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03259 81 YALFPHLTVAENiafGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 158 LDPEgIRW-LRNFLRS-FAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03259 161 LDAK-LREeLREELKElQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-207 |
1.70e-37 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 133.24 E-value: 1.70e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLR------- 73
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIarlgiar 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 -----------TVG-----AVLEASNYHPARSGRNHLRVLAAAAGLSpGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLS 137
Cdd:COG0411 84 tfqnprlfpelTVLenvlvAAHARLGRGLLAALLRLPRARREEREAR-ERAEELLERVGLADRADEPAGNLSYGQQRRLE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:COG0411 163 IARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGiTILLIEHDMDLVMGLADRIVVLDFGRVIA 233
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-214 |
1.79e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 138.88 E-value: 1.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA-----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR--------ATVSGRRYRE 67
Cdd:COG1123 260 LLEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSilfdgkdlTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 68 LAE--------------PLRTVGAVLeasnyhpARSGRNHLRVLAAAAglsPGRVDEVLAEVELS-GAAKRRVGGYSLGM 132
Cdd:COG1123 340 LRRrvqmvfqdpysslnPRMTVGDII-------AEPLRLHGLLSRAER---RERVAELLERVGLPpDLADRYPHELSGGQ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 133 RQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSV 211
Cdd:COG1123 410 RQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGlTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
...
gi 1671887361 212 AEL 214
Cdd:COG1123 490 EEV 492
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-214 |
3.60e-36 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 129.33 E-value: 3.60e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-----RELAEPLRTV 75
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglseKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLeasnyhpaRSG----------------RNHLRvlaaaagLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQR 135
Cdd:COG1127 85 GMLF--------QGGalfdsltvfenvafplREHTD-------LSEAeireLVLEKLELVGLPGAADKMPSELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEG-------IRWLRNFLrsfagrGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITsavidelIRELRDEL------GLTSVVVTHDLDSAFAIADRVAVLADGKIIAE 223
|
....*.
gi 1671887361 209 QSVAEL 214
Cdd:COG1127 224 GTPEEL 229
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-214 |
4.22e-36 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 129.78 E-value: 4.22e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAeplRTV 75
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRdlaslSRRELA---RRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEASNYHPA-------RSGRN-HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:COG1120 78 AYVPQEPPAPFGltvrelvALGRYpHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPP 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 148 LLVLDEPANGLDP----EGIRWLRNFLRSfagRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1120 158 LLLLDEPTSHLDLahqlEVLELLRRLARE---RGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEV 225
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-222 |
2.35e-35 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 134.87 E-value: 2.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR----------------- 64
Cdd:NF033858 267 IEARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPvdagdiatrrrvgymsq 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 65 ----YRELaeplrTVGA--VLEASNYHparsgrnhlrvLAAAAglSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSV 138
Cdd:NF033858 347 afslYGEL-----TVRQnlELHARLFH-----------LPAAE--IAARVAEMLERFDLADVADALPDSLPLGIRQRLSL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEG--------IRWLRNflrsfagRGGTVFVSSHVLGEmSQLADEVVIIHRGKLVAHQS 210
Cdd:NF033858 409 AVAVIHKPELLILDEPTSGVDPVArdmfwrllIELSRE-------DGVTIFISTHFMNE-AERCDRISLMHAGRVLASDT 480
|
250
....*....|..
gi 1671887361 211 VAELTVQAAGAT 222
Cdd:NF033858 481 PAALVAARGAAT 492
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-289 |
3.01e-35 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 129.88 E-value: 3.01e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY------RElaeplRTV 75
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLftnlppRE-----RRV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEasnyHPA--RsgrnHLRVLA-AAAGLS---PG------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL 143
Cdd:COG1118 78 GFVFQ----HYAlfP----HMTVAEnIAFGLRvrpPSkaeiraRVEELLELVQLEGLADRYPSQLSGGQRQRVALARALA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 144 GEPELLVLDEPANGLD----PEGIRWLRNFLRSFagRGGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL----- 214
Cdd:COG1118 150 VEPEVLLLDEPFGALDakvrKELRRWLRRLHDEL--GGTTVFV-THDQEEALELADRVVVMNQGRIEQVGTPDEVydrpa 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 215 TVQAA---GATRVRSPRADEllARLRAGGIDAEPTEAgalavhapperVGDLAAEAGIPLHELVAEKGSLEEAFLELT 289
Cdd:COG1118 227 TPFVArflGCVNVLRGRVIG--GQLEADGLTLPVAEP-----------LPDGPAVAGVRPHDIEVSREPEGENTFPAT 291
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-205 |
4.16e-35 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 126.68 E-value: 4.16e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEa 81
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 sNYHPARsgrnHLRVLAAAA-GLS-------------PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:cd03296 82 -HYALFR----HMTVFDNVAfGLRvkprserppeaeiRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAGRGG--TVFVsSHVLGEMSQLADEVVIIHRGKL 205
Cdd:cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHvtTVFV-THDQEEALEVADRVVVMNKGRI 215
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-206 |
7.12e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 125.06 E-value: 7.12e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRF-RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyRELAEPLRTVGAVLEA 81
Cdd:cd03226 1 RIENISFSYkKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP-IKAKERRKSIGYVMQD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPAR-SGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:cd03226 80 VDYQLFTdSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 161 EGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-234 |
7.31e-35 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 126.46 E-value: 7.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRT 74
Cdd:COG1124 1 MLEVRNLSVSYGQGgrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRpvTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VGAVLE--ASNYHPARSGRNHLRVLAAAAGL--SPGRVDEVLAEVELSGA-AKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:COG1124 81 VQMVFQdpYASLHPRHTVDRILAEPLRIHGLpdREERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALILEPELL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 150 VLDEPANGLDP----EGIRWLRNfLRsfAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELtvqaagATRVR 225
Cdd:COG1124 161 LLDEPTSALDVsvqaEILNLLKD-LR--EERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL------LAGPK 231
|
....*....
gi 1671887361 226 SPRADELLA 234
Cdd:COG1124 232 HPYTRELLA 240
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-289 |
1.38e-34 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 128.02 E-value: 1.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT-VGAVLE 80
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARArIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLlefaRLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGATRVR----SPRADEL 232
Cdd:PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEiyggDPHELSS 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 233 LARLRAGGIDaepTEAGALAVHAP-PERV-GDLAAEAGIplhELVAEKGSLEEAFLELT 289
Cdd:PRK13536 282 LVKPYARRIE---VSGETLFCYAPdPEQVrVQLRGRAGL---RLLQRPPNLEDVFLRLT 334
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-245 |
1.63e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 130.79 E-value: 1.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT--AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPT---SGRATVSGRRYRELAEPLR-- 73
Cdd:COG1123 4 LLEVRDLSVRYPGGDvpAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRgr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLE--ASNYHPARSGRN---HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:COG1123 84 RIGMVFQdpMTQLNPVTVGDQiaeALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 149 LVLDEPANGLDPEGIRWLRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGATRVrsP 227
Cdd:COG1123 164 LIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQALAAV--P 241
|
250
....*....|....*...
gi 1671887361 228 RADELLARLRAGGIDAEP 245
Cdd:COG1123 242 RLGAARGRAAPAAAAAEP 259
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-204 |
5.14e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 121.91 E-value: 5.14e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR---RYRELAEPLRT-VGA 77
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEdltDLEDELPPLRRrIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASNYHParsgrnHLRVLaaaaglspgrvdEVLAEVeLSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03229 81 VFQDFALFP------HLTVL------------ENIALG-LSG-----------GQQQRVALARALAMDPDVLLLDEPTSA 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1671887361 158 LDPEGIRWLRNFLRS-FAGRGGTVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:cd03229 131 LDPITRREVRALLKSlQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-208 |
1.05e-33 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 122.61 E-value: 1.05e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFR----SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAE------ 70
Cdd:cd03257 1 LLEVKNLSVSFPtgggSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRrlrkir 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 ----------------PLRTVGAVL-EASNYHPARSGRNHLRVlaaaaglspgRVDEVLAEVELSGA-AKRRVGGYSLGM 132
Cdd:cd03257 81 rkeiqmvfqdpmsslnPRMTIGEQIaEPLRIHGKLSKKEARKE----------AVLLLLVGVGLPEEvLNRYPHELSGGQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 133 RQRLSVAAALLGEPELLVLDEPANGLDPEgIRW--LRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVS-VQAqiLDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-207 |
1.48e-33 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 121.00 E-value: 1.48e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAeplRTVGA 77
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKdlaslSPKELA---RKIAY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEAsnyhparsgrnhlrvlaaaaglspgrvdevLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03214 78 VPQA------------------------------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 158 LDPEGIRWLRNFLRSFAG-RGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03214 128 LDIAHQIELLELLRRLAReRGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-156 |
7.41e-33 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 118.13 E-value: 7.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRTVGAVLEASNYHPARSGRNHL 94
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQdlTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 95 RVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVG----GYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:pfam00005 81 RLGLLLKGLSKRekdaRAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-214 |
1.30e-32 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 119.91 E-value: 1.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAE----PLRT-VG 76
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEaelyRLRRrMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEasnyhparSG----------------RNHLRvlaaaagLSPGRVDEV----LAEVELSGAAKRRVGGYSLGMRQRL 136
Cdd:cd03261 81 MLFQ--------SGalfdsltvfenvafplREHTR-------LSEEEIREIvlekLEAVGLRGAEDLYPAELSGGMKKRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGR-GGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
2-207 |
1.69e-32 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 119.56 E-value: 1.69e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA----------------------TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAT 59
Cdd:cd03220 1 IELENVSKSYPTYkggssslkklgilgrkgevgefWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 60 VSGRryrelaeplrtVGAVLE-ASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMRQ 134
Cdd:cd03220 81 VRGR-----------VSSLLGlGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIiefsELGDFIDLPVKTYSSGMKA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 135 RLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03220 150 RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-207 |
9.83e-32 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 117.19 E-value: 9.83e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyreLAEPLRTVGA 77
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEP---VTGPGPDRGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDE 153
Cdd:cd03293 78 VFQQDALLPWLTVLDNVALGLELQGVPKAeareRAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 154 PANGLDpEGIR-----WLRNFLRSfagRGGTVFVSSHVLGEMSQLADEVVII--HRGKLVA 207
Cdd:cd03293 158 PFSALD-ALTReqlqeELLDIWRE---TGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVA 214
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-209 |
1.02e-31 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 117.46 E-value: 1.02e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFR-SATAVDDLSFSVPKGRITgFL-GPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEPLR 73
Cdd:COG2884 1 MIRFENVSKRYPgGREALSDVSLEIEKGEFV-FLtGPSGAGKSTLLKLLYGEERPTSGQVLVNGQdlsrlKRREIPYLRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAV-------------------LEASNYHPARSGRnhlrvlaaaaglspgRVDEVLAEVELSGAAKRRVGGYSLGMRQ 134
Cdd:COG2884 80 RIGVVfqdfrllpdrtvyenvalpLRVTGKSRKEIRR---------------RVREVLDLVGLSDKAKALPHELSGGEQQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 135 RLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQ 209
Cdd:COG2884 145 RVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDE 219
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-208 |
1.49e-31 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.22 E-value: 1.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYrELAEPLRtvgavlea 81
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV-SFASPRD-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 snyhparsgrnhlrvlAAAAGLspgrvdevlaevelsgaakRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:cd03216 72 ----------------ARRAGI-------------------AMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1671887361 162 GIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-214 |
1.54e-31 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 116.90 E-value: 1.54e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGL-----ALPTSGRATVSGRRYRELAEPL---- 72
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLndlipGAPDEGEVLLDGKDIYDLDVDVlelr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVGAVLEASNYHPArSGRNHLRVLAAAAGLSP-----GRVDEVLAEVELSGAAKRRVGGYSL--GMRQRLSVAAALLGE 145
Cdd:cd03260 81 RRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIKLkeeldERVEEALRKAALWDEVKDRLHALGLsgGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 146 PELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIV-THNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-206 |
6.45e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 115.41 E-value: 6.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHParsgrnHLRVLAAAA------GLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03300 81 YALFP------HLTVFENIAfglrlkKLPKAeikeRVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFV-SSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03300 155 DEPLGALDLKLRKDMQLELKRLQKELGITFVfVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-205 |
7.71e-31 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 114.89 E-value: 7.71e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEPL 72
Cdd:cd03255 1 IELKNLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTdisklSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 R-TVGAVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:cd03255 81 RrHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKerreRAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSHVLgEMSQLADEVVIIHRGKL 205
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNkEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-214 |
9.52e-31 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 114.99 E-value: 9.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF----RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEP 71
Cdd:cd03258 1 MIELKNVSKVFgdtgGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTdltllSGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEASNYHPARSGRNH----LRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENvalpLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-238 |
2.84e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 114.42 E-value: 2.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrELAEPLRTVG 76
Cdd:COG1116 7 ALELRGVSKRFPTGgggvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGK---PVTGPGPDRG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:COG1116 84 VVFQEPALLPWLTVLDNVALGLELRGVPKAerreRARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIHR--GKLvahqsVAELTVQAAGAtRVRSPR 228
Cdd:COG1116 164 EPFGALDALTRERLQDELLRLWQETGKtvLFV-THDVDEAVFLADRVVVLSArpGRI-----VEEIDVDLPRP-RDRELR 236
|
250
....*....|
gi 1671887361 229 ADELLARLRA 238
Cdd:COG1116 237 TSPEFAALRA 246
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-205 |
2.94e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 119.01 E-value: 2.94e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 4 VERLTKRFRSATAVDDLSFSVPKG-RItGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-------------------- 62
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGdRI-GLVGRNGAGKSTLLKILAGELEPDSGEVSIPKglrigylpqeppldddltvl 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 63 -------RRYRELAEPLRTVGAVLEASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGA-AKRRVGGYSLGMRQ 134
Cdd:COG0488 80 dtvldgdAELRALEAELEELEAKLAEPDEDLERLAELQEEFEALGGWEAEARAEEILSGLGFPEEdLDRPVSELSGGWRR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 135 RLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:COG0488 160 RVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYP---GTVLVVSHDRYFLDRVATRILELDRGKL 227
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-254 |
7.98e-30 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 115.60 E-value: 7.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTlrvllglALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-------ALPAHV*GPDAGRRPWRF*TWCANRRALRRT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYH-PAR-------SGRNHLRVLAAAAGLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:NF000106 87 IG*HrPVR*grresfSGRENLYMIGR*LDLSRkdarARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 150 VLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGAT-RVRSPR 228
Cdd:NF000106 167 YLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVGGRTlQIRPAH 246
|
250 260
....*....|....*....|....*....
gi 1671887361 229 A---DELLARLRAGGIDAeptEAGALAVH 254
Cdd:NF000106 247 AaelDRMVGAIAQAGLDG---IAGATADH 272
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
2-219 |
2.47e-29 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 114.05 E-value: 2.47e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARS-GRN---HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:PRK11432 87 YALFPHMSlGENvgyGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 158 LDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAA 219
Cdd:PRK11432 167 LDANLRRSMREKIRELQQQFNiTSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-215 |
3.71e-29 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 111.30 E-value: 3.71e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-----------RRYR-- 66
Cdd:COG3638 2 MLELRNLSKRYPGGTpALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGqdvtalrgralRRLRrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 --------ELAEPLRTVGAVLeasnyhparSGR-NHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMR 133
Cdd:COG3638 82 igmifqqfNLVPRLSVLTNVL---------AGRlGRTSTWRSLLGLFPPedreRALEALERVGLADKAYQRADQLSGGQQ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 134 QRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAG-RGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVA 212
Cdd:COG3638 153 QRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAReDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPA 232
|
...
gi 1671887361 213 ELT 215
Cdd:COG3638 233 ELT 235
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1-236 |
5.47e-29 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 116.65 E-value: 5.47e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYrelaepLRTVGAV 78
Cdd:TIGR01257 1937 ILRLNELTKVYsgTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI------LTNISDV 2010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPA-------RSGRNHLRVLAAAAGLSPGRVDEV----LAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:TIGR01257 2011 HQNMGYCPQfdaiddlLTGREHLYLYARLRGVPAEEIEKVanwsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGA----TR 223
Cdd:TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGyivtMK 2170
|
250
....*....|...
gi 1671887361 224 VRSPRaDELLARL 236
Cdd:TIGR01257 2171 IKSPK-DDLLPDL 2182
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
4-214 |
8.82e-29 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 110.06 E-value: 8.82e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 4 VERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT---VGAVL- 79
Cdd:TIGR04406 4 AENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERArlgIGYLPq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:TIGR04406 84 EASIFRKLTVEENIMAVLEIRKDLDRAereeRLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLDEPF 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 156 NGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR04406 164 AGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-206 |
8.96e-29 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 112.50 E-value: 8.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLE 80
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKRNVGMVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 asNY--HParsgrnHLRVLA------AAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:COG3842 85 --DYalFP------HLTVAEnvafglRMRGVPKAeiraRVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 149 LVLDEPANGLDP---EGIR-WLRNFLRSFagrGGT-VFVsSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:COG3842 157 LLLDEPLSALDAklrEEMReELRRLQREL---GITfIYV-THDQEEALALADRIAVMNDGRIE 215
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-246 |
9.73e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 110.98 E-value: 9.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP-LRT-VGAV 78
Cdd:PRK13647 5 IEVEDLHFRYKDGTkALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRSkVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LE--------ASNYHPARSGRNHLRvLAAAAGLSpgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK13647 85 FQdpddqvfsSTVWDDVAFGPVNMG-LDKDEVER--RVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 151 LDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT----VQAAGatrVRS 226
Cdd:PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTdediVEQAG---LRL 238
|
250 260
....*....|....*....|
gi 1671887361 227 PRADELLARLRAGGIDAEPT 246
Cdd:PRK13647 239 PLVAQIFEDLPELGQSKLPL 258
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-217 |
5.51e-28 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 112.43 E-value: 5.51e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYR-------------- 66
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRirsprdaialgigm 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 -----ELAEPLrTVgavleASNYHPARSGRNHLRV-LAAAAGlspgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAA 140
Cdd:COG3845 85 vhqhfMLVPNL-TV-----AENIVLGLEPTKGGRLdRKAARA----RIRELSERYGLDVDPDAKVEDLSVGEQQRVEILK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 141 ALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:COG3845 155 ALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEE 231
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-205 |
5.99e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 107.11 E-value: 5.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR---RYRELAEPL--RTV 75
Cdd:cd03292 1 IEFINVTKTYPNGTaALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQdvsDLRGRAIPYlrRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEASNYHPARSGRNH----LRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENvafaLEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-206 |
1.23e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 106.18 E-value: 1.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDeideRVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 158 LDPEGIRWLRNFLRSFAGRGGTVFV-SSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIyVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-206 |
1.56e-27 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 107.00 E-value: 1.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFR-SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL--AEPLRTVGAV 78
Cdd:cd03295 1 IEFENVTKRYGgGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQdpVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPARSGRNHLRVLAAAAGLSP----GRVDEVLAEVEL--SGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKekirERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 153 EPANGLDPEGIRWL-RNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03295 161 EPFGALDPITRDQLqEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-214 |
1.60e-27 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 106.36 E-value: 1.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT---VGAV 78
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAragIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPARSGRNHLRVlaAAAGLSPGRVDEVLAEV-----ELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDE 153
Cdd:cd03224 81 PEGRRIFPELTVEENLLL--GAYARRRAKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 154 PANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
15-214 |
1.70e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 111.39 E-value: 1.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 15 TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP-LRTVGAVLEASNYHPARSGRNH 93
Cdd:COG4988 351 PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAsWRRQIAWVPQNPYLFAGTIREN 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 94 LRVlaAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-----------SLGMRQRLSVAAALLGEPELLVLDEPANGLDPEG 162
Cdd:COG4988 431 LRL--GRPDASDEELEAALEAAGLDEFVAALPDGLdtplgeggrglSGGQAQRLALARALLRDAPLLLLDEPTAHLDAET 508
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 163 IRWLRNFLRSFAgRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG4988 509 EAEILQALRRLA-KGRTVILITHRLALLAQ-ADRILVLDDGRIVEQGTHEEL 558
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-242 |
1.82e-27 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 107.54 E-value: 1.82e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEP 71
Cdd:TIGR04521 1 IKLKNVSYIYQPGTpfekkALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRditakKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVG-------------AVLEASNYHParsgRNHlrvlaaaaGLSPG----RVDEVLAEV------------ELSGAAK 122
Cdd:TIGR04521 81 RKKVGlvfqfpehqlfeeTVYKDIAFGP----KNL--------GLSEEeaeeRVKEALELVgldeeylerspfELSGGQM 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 123 RRVggyslgmrqrlSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAG-RGGTVFVSSHVLGEMSQLADEVVIIH 201
Cdd:TIGR04521 149 RRV-----------AIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKeKGLTVILVTHSMEDVAEYADRVIVMH 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1671887361 202 RGKLVAHQSVAEL-----TVQAAGatrVRSPRADELLARLRAGGID 242
Cdd:TIGR04521 218 KGKIVLDGTPREVfsdvdELEKIG---LDVPEITELARKLKEKGLP 260
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-214 |
4.35e-27 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 105.94 E-value: 4.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSG-RATVSGRRY-RELAEPLRT---- 74
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELRKrigl 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VGAVLeASNYHPARSGRNhlrVLAAAA----GLSP-------GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL 143
Cdd:COG1119 83 VSPAL-QLRFPRDETVLD---VVLSGFfdsiGLYReptdeqrERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 144 GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT--VFVSSHVlGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPtlVLVTHHV-EEIPPGITHVLLLKDGRVVAAGPKEEV 230
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-217 |
5.93e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 109.34 E-value: 5.93e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYR-------------- 66
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfrsprdaqaagiai 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 ---ELA-EPLRTVgavleASN----YHPARSGRNHLRVLAAAAglspgrvDEVLAEVELSGAAKRRVGGYSLGMRQRLSV 138
Cdd:COG1129 84 ihqELNlVPNLSV-----AENiflgREPRRGGLIDWRAMRRRA-------RELLARLGLDIDPDTPVGDLSVAQQQLVEI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRG-GTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:COG1129 152 ARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGvAIIYI-SHRLDEVFEIADRVTVLRDGRLVGTGPVAELTED 230
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-204 |
2.52e-26 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 101.69 E-value: 2.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAeplrtvgavl 79
Cdd:cd03228 1 IEFKNVSFSYpgRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 easnyhparsgRNHLRVLAAAAGLSPGRVDEVLAEVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:cd03228 71 -----------LESLRKNIAYVPQDPFLFSGTIRENILSG-----------GQRQRIAIARALLRDPPILILDEATSALD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 160 PEG-IRWLRNFLRSFAGRggTVFVSSHVLGEMsQLADEVVIIHRGK 204
Cdd:cd03228 129 PETeALILEALRALAKGK--TVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-214 |
2.97e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 108.38 E-value: 2.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaEP--LRT-VG 76
Cdd:COG2274 474 IELENVSFRYpgDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQI-DPasLRRqIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLE---------ASNYHPARSGRNHLRVLAAA--AGLS------PGRVDEVLAE--VELSGaakrrvggyslGMRQRLS 137
Cdd:COG2274 553 VVLQdvflfsgtiRENITLGDPDATDEEIIEAArlAGLHdfiealPMGYDTVVGEggSNLSG-----------GQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLgEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEEL 696
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-214 |
3.74e-26 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 103.19 E-value: 3.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG---------RRYRE---- 67
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGedithlpmhKRARLgigy 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 68 LA-EP--LR--TVG----AVLEASNyhPARSGRNHlrvlaaaaglspgRVDEVLAEVELSGAAKRRvgGYSL--GMRQRL 136
Cdd:COG1137 83 LPqEAsiFRklTVEdnilAVLELRK--LSKKEREE-------------RLEELLEEFGITHLRKSK--AYSLsgGERRRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1137 146 EIARALATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
14-185 |
4.31e-26 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 101.73 E-value: 4.31e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 14 ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY----RELAEPLRTVGAVLEASN---YHP 86
Cdd:TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLdysrKGLLERRQRVGLVFQDPDdqlFAA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 ------ARSGRNhlrvlaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:TIGR01166 85 dvdqdvAFGPLN--------LGLSEAeverRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156
|
170 180
....*....|....*....|....*....
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:TIGR01166 157 GLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-218 |
5.36e-26 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 102.65 E-value: 5.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-----------RRYRE-- 67
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGtdinklkgkalRQLRRqi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 68 --------LAEPLRTVGAVLeasnyHPARSGRNHLRVLaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQR 135
Cdd:cd03256 81 gmifqqfnLIERLSVLENVL-----SGRLGRRSTWRSL---FGLFPKeekqRALAALERVGLLDKAYQRADQLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINrEEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
....
gi 1671887361 215 TVQA 218
Cdd:cd03256 233 TDEV 236
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-214 |
5.40e-26 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 102.62 E-value: 5.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR----------------- 64
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDitklpmhkrarlgigyl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 65 ------YREL--AEPLRtvgAVLEASNYhpARSGRNHlrvlaaaaglspgRVDEVLAEVELSGAAKRRVGGYSLGMRQRL 136
Cdd:cd03218 81 pqeasiFRKLtvEENIL---AVLEIRGL--SKKEREE-------------KLEELLEEFHITHLRKSKASSLSGGERRRV 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-214 |
5.41e-26 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 104.77 E-value: 5.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEP 71
Cdd:COG1135 1 MIELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVdltalSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEASNYHPARSGRNH----LRVlaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL 143
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAENvalpLEI----AGVPKAeirkRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 144 GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHvlgEMS---QLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1135 157 NNPKVLLCDEATSALDPETTRSILDLLKDINRELGlTIVLITH---EMDvvrRICDRVAVLENGRIVEQGPVLDV 228
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-244 |
5.55e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 103.73 E-value: 5.55e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY--RELAEPLRTVGA 77
Cdd:PRK13652 3 LIETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItkENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASN-------------YHPARSGRNHLRVlaaaaglsPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLG 144
Cdd:PRK13652 83 VFQNPDdqifsptveqdiaFGPINLGLDEETV--------AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 145 EPELLVLDEPANGLDPEGIRWLRNFLRSFAGR-GGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGATR 223
Cdd:PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
250 260
....*....|....*....|...
gi 1671887361 224 VR--SPRADELLARLRAGGIDAE 244
Cdd:PRK13652 235 VHldLPSLPKLIRSLQAQGIAID 257
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-205 |
1.07e-25 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 101.05 E-value: 1.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL------------- 68
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMpppewrrqvayvp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 69 AEPLR---TVGAVLE-ASNYHPARSGRNHLRVLAAAAGLSPgrvdEVLaevelsgaaKRRVGGYSLGMRQRLSVAAALLG 144
Cdd:COG4619 81 QEPALwggTVRDNLPfPFQLRERKFDRERALELLERLGLPP----DIL---------DKPVERLSGGERQRLALIRALLL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 145 EPELLVLDEPANGLDPEG----IRWLRNFLrsfAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:COG4619 148 QPDVLLLDEPTSALDPENtrrvEELLREYL---AEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-214 |
1.17e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 106.39 E-value: 1.17e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP-LRTVGAV 78
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDdLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPARSGRNHLRVlaAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-----------SLGMRQRLSVAAALLGEPE 147
Cdd:COG4987 414 VPQRPHLFDTTLRENLRL--ARPDATDEELWAALERVGLGDWLAALPDGLdtwlgeggrrlSGGERRRLALARALLRDAP 491
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIR-WLRNFLRSFAGRggTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG4987 492 ILLLDEPTEGLDAATEQaLLADLLEALAGR--TVLLITHRLAGLER-MDRILVLEDGRIVEQGTHEEL 556
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-214 |
1.33e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 103.21 E-value: 1.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRS----ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLP----TSGRATVSGR--------- 63
Cdd:COG0444 1 LLEVRNLKVYFPTrrgvVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGL-LPppgiTSGEILFDGEdllklseke 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 64 ----RYRELA----------EPLRTVGAVLeasnyhpARSGRNHLRVLAAAAglsPGRVDEVLAEVELSgAAKRRVGGY- 128
Cdd:COG0444 80 lrkiRGREIQmifqdpmtslNPVMTVGDQI-------AEPLRIHGGLSKAEA---RERAIELLERVGLP-DPERRLDRYp 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 129 ---SLGMRQRLSVAAALLGEPELLVLDEPANGLDPEgIRW--LrNFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIH 201
Cdd:COG0444 149 helSGGMRQRVMIARALALEPKLLIADEPTTALDVT-IQAqiL-NLLKDLQRELGLaiLFI-THDLGVVAEIADRVAVMY 225
|
250
....*....|...
gi 1671887361 202 RGKLVAHQSVAEL 214
Cdd:COG0444 226 AGRIVEEGPVEEL 238
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-204 |
1.78e-25 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 98.67 E-value: 1.78e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSgrryrelaeplrtvgavlea 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 snyhparsgrnhlrvlaaaAGLSPGRVDevlaevELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:cd03221 61 -------------------STVKIGYFE------QLSG-----------GEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1671887361 162 GIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:cd03221 105 SIEALEEALKEYP---GTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-218 |
2.09e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 101.35 E-value: 2.09e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLR------- 73
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIarlgigr 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 -----------TVGAVLEASnyhpARSGRNHLRVLaaAAGLSPG---RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVA 139
Cdd:COG4674 90 kfqkptvfeelTVFENLELA----LKGDRGVFASL--FARLTAEerdRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIG 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRgGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEltVQA 218
Cdd:COG4674 164 MLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLAGK-HSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDE--VQA 239
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-205 |
2.20e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 99.21 E-value: 2.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATA--VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrelaeplrtvgavl 79
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRnHLRVLAAAAGLSPGRVdevlAEVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:cd03246 65 DISQWDPNELGD-HVGYLPQDDELFSGSI----AENILSG-----------GQRQRLGLARALYGNPRILVLDEPNSHLD 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 160 PEGIRWLRNFLRSFAGRGGTVFVSSHVLgEMSQLADEVVIIHRGKL 205
Cdd:cd03246 129 VEGERALNQAIAALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-213 |
4.53e-25 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 100.58 E-value: 4.53e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL-AEPLRTVGAVL 79
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWsPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 easnyhPARSGRN-HLRVLA-AAAGLSPGR---------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL----- 143
Cdd:COG4559 81 ------PQHSSLAfPFTVEEvVALGRAPHGssaaqdrqiVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwep 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 144 --GEPELLVLDEPANGLDP-EGIRWLRnFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAE 213
Cdd:COG4559 155 vdGGPRWLFLDEPTSALDLaHQHAVLR-LARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEE 226
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
19-207 |
5.26e-25 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 99.29 E-value: 5.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRiTGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPL------RTVGAVLEASNYHParsgrn 92
Cdd:cd03297 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKInlppqqRKIGLVFQQYALFP------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 HLRV----LAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIR 164
Cdd:cd03297 89 HLNVrenlAFGLKRKRNRedriSVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1671887361 165 WLRNFLRSFAGR-GGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03297 169 QLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-214 |
5.32e-25 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 100.16 E-value: 5.32e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAeplRTV 75
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLdvattPSRELA---KRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 gAVLEASNYHPARsgrnhLRV--LaaaagLSPGR---------------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSV 138
Cdd:COG4604 78 -AILRQENHINSR-----LTVreL-----VAFGRfpyskgrltaedreiIDEAIAYLDLEDLADRYLDELSGGQRQRAFI 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLAdELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEI 223
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-207 |
5.52e-25 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 100.47 E-value: 5.52e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-----RELAEPLrtv 75
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIsmlssRQLARRL--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 gAVLeaSNYHPARSGRNhLRVLaAAAGLSP-----GR--------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAAL 142
Cdd:PRK11231 79 -ALL--PQHHLTPEGIT-VREL-VAYGRSPwlslwGRlsaednarVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
6-209 |
5.67e-25 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 99.10 E-value: 5.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 6 RLTK-RFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNY 84
Cdd:cd03298 2 RLDKiRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 85 HParsgrnHLRVLA-AAAGLSPG---------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEP 154
Cdd:cd03298 82 FA------HLTVEQnVGLGLSPGlkltaedrqAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 155 ANGLDPEgirwLRN-----FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQ 209
Cdd:cd03298 156 FAALDPA----LRAemldlVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-207 |
1.67e-24 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 98.19 E-value: 1.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP----- 71
Cdd:COG1136 4 LLELRNLTKSYGTGegevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERelarl 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 -LRTVGAVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:COG1136 84 rRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKerreRARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 147 ELLVLDEPANGLDPE-GIRWLRNFLRSFAGRGGTVFVSSHVLgEMSQLADEVVIIHRGKLVA 207
Cdd:COG1136 164 KLILADEPTGNLDSKtGEEVLELLRELNRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVS 224
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
22-214 |
3.17e-24 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 97.61 E-value: 3.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 22 FSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRElaePLRTVGAVLE---------ASNYHPARSGRN 92
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---GWRHIGYVPQrhefawdfpISVAHTVMSGRT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 HLRVLAAAAGLSPGR-VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:TIGR03771 78 GHIGWLRRPCVADFAaVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1671887361 172 SFAGRGGTVFVSSHVLGEMSQLADEVVIIHrGKLVAHQSVAEL 214
Cdd:TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQL 199
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-205 |
3.35e-24 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 102.78 E-value: 3.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 4 VERLTKRFRSA--TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:TIGR01257 931 VKNLVKIFEPSgrPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SN--YHPARSGRnHLRVLAAAAGLSPGRVD-EVLAEVELSGAAKRR---VGGYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:TIGR01257 1011 HNilFHHLTVAE-HILFYAQLKGRSWEEAQlEMEAMLEDTGLHHKRneeAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 156 NGLDPEGIRWLRNFLRSFAGrGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:TIGR01257 1090 SGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-206 |
7.15e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 100.91 E-value: 7.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVsGRR----Y----RELAEPL 72
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL-GETvkigYfdqhQEELDPD 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVgaVLEASNYHPARSgRNHLRVLAAAAGLSPgrvDEVLAEVE-LSGaakrrvggyslGMRQRLSVAAALLGEPELLVL 151
Cdd:COG0488 394 KTV--LDELRDGAPGGT-EQEVRGYLGRFLFSG---DDAFKPVGvLSG-----------GEKARLALAKLLLSPPNVLLL 456
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:COG0488 457 DEPTNHLDIETLEALEEALDDFP---GTVLLVSHDRYFLDRVATRILEFEDGGVR 508
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-206 |
7.78e-24 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 96.57 E-value: 7.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALP---TSGRATVSGRRyRELAEPLRTVGAVLEASNYHPARSGRNHLR 95
Cdd:cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQP-RKPDQFQKCVAYVRQDDILLPGLTVRETLT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 96 VLAAAAG--LSPGRVDEVLAEVE-LSGAAKRRVGGY-----SLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLR 167
Cdd:cd03234 104 YTAILRLprKSSDAIRKKRVEDVlLRDLALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1671887361 168 NFLRSFAGRGGTVFVSSHVLG-EMSQLADEVVIIHRGKLV 206
Cdd:cd03234 184 STLSQLARRNRIVILTIHQPRsDLFRLFDRILLLSSGEIV 223
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-206 |
7.84e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 97.13 E-value: 7.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV---------SGRRYRELAEP 71
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidtarSLSQQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRT-VGAVLEASNYHPARSGRNH-----LRVLAAAAGLSPGRVDEVLAEVELSG---AAKRRVGGyslGMRQRLSVAAAL 142
Cdd:PRK11264 83 LRQhVGFVFQNFNLFPHRTVLENiiegpVIVKGEPKEEATARARELLAKVGLAGketSYPRRLSG---GQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-236 |
8.36e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 97.84 E-value: 8.36e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RY--RELAEPLRTV 75
Cdd:PRK13639 1 ILETRDLKYSYPDGTeALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEpiKYdkKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEASN-------------YHPARSGRNHLRVlaaaaglsPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAAL 142
Cdd:PRK13639 81 GIVFQNPDdqlfaptveedvaFGPLNLGLSKEEV--------EKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL-----TVQ 217
Cdd:PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVfsdieTIR 232
|
250
....*....|....*....
gi 1671887361 218 AAgatRVRSPRADELLARL 236
Cdd:PRK13639 233 KA---NLRLPRVAHLIEIL 248
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-215 |
9.12e-24 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 96.36 E-value: 9.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAvdDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLE 80
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVSMLFQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHParsgrnHLRVLA-AAAGLSPG---------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:COG3840 79 ENNLFP------HLTVAQnIGLGLRPGlkltaeqraQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 151 LDEPANGLDP----EGIRWLRNFLRSfagRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:COG3840 153 LDEPFSALDPalrqEMLDLVDELCRE---RGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALL 218
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-205 |
1.02e-23 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 99.00 E-value: 1.02e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEa 81
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 sNYHPARsgrnHLRVLAAAA-GLS--PGR-----------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK10851 82 -HYALFR----HMTVFDNIAfGLTvlPRRerpnaaaikakVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 148 LLVLDEPANGLDP----EGIRWLRNFLRSFagRGGTVFVsSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK10851 157 ILLLDEPFGALDAqvrkELRRWLRQLHEEL--KFTSVFV-THDQEEAMEVADRVVVMSQGNI 215
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-207 |
1.43e-23 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 96.76 E-value: 1.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrelaeplrtvgavlE 80
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR----------------P 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRnHLRVLAAAA--------------GLSPGR---------VDEVLAEVELSGAAKRRVGGYSLGMRQRLS 137
Cdd:PRK13548 66 LADWSPAELAR-RRAVLPQHSslsfpftveevvamGRAPHGlsraeddalVAAALAQVDLAHLAGRDYPQLSGGEQQRVQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 138 VAAALL------GEPELLVLDEPANGLDP-EGIRWLRnFLRSFAG-RGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:PRK13548 145 LARVLAqlwepdGPPRWLLLDEPTSALDLaHQHHVLR-LARQLAHeRGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
19-261 |
1.45e-23 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 98.26 E-value: 1.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPL------RTVGAVLEASNYHPARSGRN 92
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIflppekRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 HL-----RVLAAAAGLSPGRVDEVLAeveLSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLD----PEGI 163
Cdd:TIGR02142 95 NLrygmkRARPSERRISFERVIELLG---IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDdprkYEIL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 164 RWLRNFLRSFagRGGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGATRVRSPRADELLARL----RAG 239
Cdd:TIGR02142 172 PYLERLHAEF--GIPILYV-SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGSLIEGVVaehdQHY 248
|
250 260
....*....|....*....|..
gi 1671887361 240 GIDAEPTEAGALAVHAPPERVG 261
Cdd:TIGR02142 249 GLTALRLGGGHLWVPENLGPTG 270
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-215 |
1.68e-23 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 96.21 E-value: 1.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEPLRT 74
Cdd:TIGR02315 1 MLEVENLSKVYPNGKqALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTditklRGKKLRKLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VGAVLEASNYHPARSG-RNhlrVLAAAAGLSPG--------------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVA 139
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVlEN---VLHGRLGYKPTwrsllgrfseedkeRALSALERVGLADKAYQRADQLSGGQQQRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGiTVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-208 |
2.42e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 95.47 E-value: 2.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY--------RELAEPLR 73
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsktpsdKAIRELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLEASNYHPARSGRNHL-----RVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNLieapcRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 149 LVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-240 |
2.73e-23 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 97.86 E-value: 2.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVeRLTKRFRSATAvdDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR------RYRELAEPLRT 74
Cdd:COG4148 2 MLEV-DFRLRRGGFTL--DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdsaRGIFLPPHRRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VGAVLEASNYHParsgrnHLRVLA--------AAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:COG4148 79 IGYVFQEARLFP------HLSVRGnllygrkrAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 147 ELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL---------- 214
Cdd:COG4148 153 RLLLMDEPLAALDLARKAEILPYLERLRDELDIpiLYV-SHSLDEVARLADHVVLLEQGRVVASGPLAEVlsrpdllpla 231
|
250 260
....*....|....*....|....*....
gi 1671887361 215 TVQAAGA---TRVRSPRADELLARLRAGG 240
Cdd:COG4148 232 GGEEAGSvleATVAAHDPDYGLTRLALGG 260
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-205 |
3.05e-23 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 94.52 E-value: 3.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY----RELAEPLRTVGA 77
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddkKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASNYHParsgrnHLRVL-------AAAAGLSPGRVDE----VLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:cd03262 81 VFQQFNLFP------HLTVLenitlapIKVKGMSKAEAEEraleLLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 147 ELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-206 |
3.35e-23 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 97.45 E-value: 3.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLE 80
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDRNIAMVFQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 asNY--HPARSGR-N---HLRVlaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:COG3839 83 --SYalYPHMTVYeNiafPLKL----RKVPKAeidrRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 151 LDEPANGLDPEgIRW-LRNFLRSFAGRGG--TVFVsSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:COG3839 157 LDEPLSNLDAK-LRVeMRAEIKRLHRRLGttTIYV-THDQVEAMTLADRIAVMNDGRIQ 213
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-206 |
4.57e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 97.21 E-value: 4.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLE 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHParsgrnHLRVLAAAA-GLS---------PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK11607 99 SYALFP------HMTVEQNIAfGLKqdklpkaeiASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 151 LDEPANGLDPEgirwLRNFLRS-----FAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK11607 173 LDEPMGALDKK----LRDRMQLevvdiLERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-200 |
4.98e-23 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 93.45 E-value: 4.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 10 RFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL---------AEPLRTVGAVle 80
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYvpqrsevpdSLPLTVRDLV-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAglspgrVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:NF040873 79 AMGRWARRGLWRRLTRDDRAA------VDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDA 152
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1671887361 161 EGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSqLADEVVII 200
Cdd:NF040873 153 ESRERIIALLAEEHARGATVVVVTHDLELVR-RADPCVLL 191
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-214 |
8.80e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 93.89 E-value: 8.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAT-----VSGRRYRELAEplRTV 75
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRfdgedITGLPPHRIAR--LGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEasnyhparsGRN---HLRV-----LAAAAGLSPGRVDEVLAEV-----ELsgAAKRRVGGYSL--GMRQRLSVAA 140
Cdd:COG0410 81 GYVPE---------GRRifpSLTVeenllLGAYARRDRAEVRADLERVyelfpRL--KERRRQRAGTLsgGEQQMLAIGR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 141 ALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG0410 150 ALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAEL 223
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
20-213 |
6.17e-22 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 91.83 E-value: 6.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYREL-AEPLRTVGAVLEASNYHPARSGRNHLRVLA 98
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWsAAELARHRAYLSQQQSPPFAMPVFQYLALH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMRQRLSVAAALL-------GEPELLVLDEPANGLDPEGIRWLR 167
Cdd:COG4138 94 QPAGASSEAVEQLLAQLaealGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLLDEPMNSLDVAQQAALD 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 168 NFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAE 213
Cdd:COG4138 174 RLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAE 219
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-208 |
7.27e-22 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 91.61 E-value: 7.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY--------RELAEPLR 73
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFdfsqkpseKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLEASNYHPARSGRNHL-----RVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENLieapcKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 149 LVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAH 208
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQ 222
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
16-214 |
1.22e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 90.75 E-value: 1.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRTVGAVLE---------ASNY 84
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHdvRDYTLASLRRQIGLVSQdvflfndtvAENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 85 HPARSGRNHLRVLAAA--AGL------SPGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEP 154
Cdd:cd03251 97 AYGRPGATREEVEEAAraANAhefimeLPEGYDTVIGErgVKLSG-----------GQRQRIAIARALLKDPPILILDEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 155 ANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03251 166 TSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-185 |
1.43e-21 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 89.73 E-value: 1.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLRTVGAVLE 80
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRdEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
170 180
....*....|....*....|....*
gi 1671887361 161 EGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:TIGR01189 161 AGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-214 |
3.18e-21 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 89.95 E-value: 3.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 5 ERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL---AEPLRTVGAV-LE 80
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLplhARARRGIGYLpQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:PRK10895 87 ASIFRRLSVYDNLMAVLQIRDDLSAeqreDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK10895 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-214 |
4.06e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 90.68 E-value: 4.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR----RYRELAEPLRTV 75
Cdd:PRK13636 5 ILKVEELNYNYSDGThALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKpidySRKGLMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLE--------ASNYHPARSGRNHLRVLAAAAglsPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK13636 85 GMVFQdpdnqlfsASVYQDVSFGAVNLKLPEDEV---RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQkELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-185 |
5.54e-21 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 92.69 E-value: 5.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-------RYRELAEPLRT 74
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETvklayvdQSRDALDPNKT 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VgavleasnYHPARSGRNHLRVlaaaaglspGRVD----EVLAEVELSGAAK-RRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:TIGR03719 403 V--------WEEISGGLDIIKL---------GKREipsrAYVGRFNFKGSDQqKKVGQLSGGERNRVHLAKTLKSGGNVL 465
|
170 180 190
....*....|....*....|....*....|....*.
gi 1671887361 150 VLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSH 185
Cdd:TIGR03719 466 LLDEPTNDLDVETLRALEEALLNFA---GCAVVISH 498
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
17-214 |
7.71e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 89.89 E-value: 7.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY------RELAEPLRTVG-------------A 77
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetgnKNLKKLRKKVSlvfqfpeaqlfenT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASNYHPARSGRNHLRVLAAA------AGLSPGRVDEvlAEVELSGAAKRRVggyslgmrqrlSVAAALLGEPELLVL 151
Cdd:PRK13641 103 VLKDVEFGPKNFGFSEDEAKEKAlkwlkkVGLSEDLISK--SPFELSGGQMRRV-----------AIAGVMAYEPEILCL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEI 232
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-242 |
2.84e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 88.18 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG----RRYRELAEPL 72
Cdd:PRK13637 3 IKIENLTHIYMEGTpfekkALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGvditDKKVKLSDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVGAVLEASNYH-------------PARSGRN----HLRVLAA--AAGLSPgrvdEVLAE---VELSGAAKRRVggysl 130
Cdd:PRK13637 83 KKVGLVFQYPEYQlfeetiekdiafgPINLGLSeeeiENRVKRAmnIVGLDY----EDYKDkspFELSGGQKRRV----- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 131 gmrqrlSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGR-GGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQ 209
Cdd:PRK13637 154 ------AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227
|
250 260 270
....*....|....*....|....*....|....*...
gi 1671887361 210 SVAEL-----TVQAAGatrVRSPRADELLARLRAGGID 242
Cdd:PRK13637 228 TPREVfkeveTLESIG---LAVPQVTYLVRKLRKKGFN 262
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
16-242 |
3.51e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 88.14 E-value: 3.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-------RRYRELAEPLRTVGAVLEASNYH--- 85
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDyaipanlKKIKEVKRLRKEIGLVFQFPEYQlfq 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 86 ----------PARSGRNHLRVLAaaaglspgRVDEVLAEVEL-SGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEP 154
Cdd:PRK13645 106 etiekdiafgPVNLGENKQEAYK--------KVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 155 ANGLDPEGIRWLRN-FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL--TVQAAGATRVRSPRADE 231
Cdd:PRK13645 178 TGGLDPKGEEDFINlFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIfsNQELLTKIEIDPPKLYQ 257
|
250
....*....|.
gi 1671887361 232 LLARLRAGGID 242
Cdd:PRK13645 258 LMYKLKNKGID 268
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-214 |
4.48e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 87.46 E-value: 4.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 7 LTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGL-----ALPTSGRATVSGR---RYRELAEPLRTVGAV 78
Cdd:PRK14271 27 LTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMndkvsGYRYSGDVLLGGRsifNYRDVLEFRRRVGML 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHPARSGRNhlrVLAA--AAGLSP-----GRVDEVLAEVELSGAAKRRVGG----YSLGMRQRLSVAAALLGEPE 147
Cdd:PRK14271 107 FQRPNPFPMSIMDN---VLAGvrAHKLVPrkefrGVAQARLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNPE 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAGRgGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK14271 184 VLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-223 |
5.50e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 87.37 E-value: 5.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR----RYRELAEPLRTVG 76
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKpldySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARSGRNH-----LRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:PRK13638 81 TVFQDPEQQIFYTDIDSdiafsLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL-----TVQAAGATR 223
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVfacteAMEQAGLTQ 237
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-214 |
7.33e-20 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 89.45 E-value: 7.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTkrFR---SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLR-TVG 76
Cdd:COG1132 340 IEFENVS--FSypgDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTlESLRrQIG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLE---------ASNYHPARSGRNHLRVLAAA--AGLS------PGRVDEVLAE--VELSGaakrrvggyslGMRQRLS 137
Cdd:COG1132 418 VVPQdtflfsgtiRENIRYGRPDATDEEVEEAAkaAQAHefiealPDGYDTVVGErgVNLSG-----------GQRQRIA 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEG-IRWLRNFLRSFAGRggTVFVSSHVLgemS--QLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1132 487 IARALLKDPPILILDEATSALDTETeALIQEALERLMKGR--TTIVIAHRL---StiRNADRILVLDDGRIVEQGTHEEL 561
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-213 |
7.84e-20 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 87.93 E-value: 7.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEP 71
Cdd:PRK11153 1 MIELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQdltalSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEasnyhparsgrnHLRVLAA------------AAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQR 135
Cdd:PRK11153 81 RRQIGMIFQ------------HFNLLSSrtvfdnvalpleLAGTPKAeikaRVTELLELVGLSDKADRYPAQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHvlgEMS---QLADEVVIIHRGKLVAHQSV 211
Cdd:PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGlTIVLITH---EMDvvkRICDRVAVIDAGRLVEQGTV 225
|
..
gi 1671887361 212 AE 213
Cdd:PRK11153 226 SE 227
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-214 |
1.23e-19 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 85.43 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY----RELAEPLRTVG 76
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLtdskKDINKLRRKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHParsgrnHLRVLAAAAgLSPGRV------------DEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLG 144
Cdd:COG1126 81 MVFQQFNLFP------HLTVLENVT-LAPIKVkkmskaeaeeraMELLERVGLADKADAYPAQLSGGQQQRVAIARALAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 145 EPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHvlgEMS---QLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG1126 154 EPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTH---EMGfarEVADRVVFMDGGRIVEEGPPEEF 223
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-217 |
1.71e-19 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 88.30 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLrtvGAVLE 80
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKL---AAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLaaaAGLSPGR-----------VD---------EVLAEVELSGAAKRRVGGYSLGMRQRLSVAA 140
Cdd:PRK09700 82 IGIIYQELSVIDELTVL---ENLYIGRhltkkvcgvniIDwremrvraaMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 141 ALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND 235
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
16-217 |
1.88e-19 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 84.97 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAE-PLRT-VGAVLEaSNYHPARSGRNH 93
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRkSLRSmIGVVLQ-DTFLFSGTIMEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 94 LRVlaaaaGLSPGRVDEVLAEVELSGAA---KRRVGGY-----------SLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:cd03254 97 IRL-----GRPNATDEEVIEAAKEAGAHdfiMKLPNGYdtvlgenggnlSQGERQLLAIARAMLRDPKILILDEATSNID 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 160 PEGIRWLRNFLRS-FAGRggTVFVSSHVLGEMsQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:cd03254 172 TETEKLIQEALEKlMKGR--TSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHDELLAK 227
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
16-207 |
2.43e-19 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 84.18 E-value: 2.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL--AEPLRTVGAVLEASNYHpARSGRNH 93
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLdpADLRRNIGYVPQDVTLF-YGTLRDN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 94 LrvlaaAAGLSPGRVDEVLAEVELSGAAK----------RRVG----GYSLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:cd03245 98 I-----TLGAPLADDERILRAAELAGVTDfvnkhpngldLQIGergrGLSGGQRQAVALARALLNDPPILLLDEPTSAMD 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1671887361 160 PEGIRWLRNFLRSFAGrGGTVFVSSHVLgEMSQLADEVVIIHRGKLVA 207
Cdd:cd03245 173 MNSEERLKERLRQLLG-DKTLIIITHRP-SLLDLVDRIIVMDSGRIVA 218
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-203 |
2.77e-19 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 84.75 E-value: 2.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyreLAEPLRTVGAVLE 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP---VEGPGAERGVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMqrleIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 157 GLDP---EGIRWLrnFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRG 203
Cdd:PRK11248 158 ALDAftrEQMQTL--LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-241 |
7.20e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 84.27 E-value: 7.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR---YRELAEPLRTVG 76
Cdd:PRK13644 1 MIRLENVSYSYPDGTpALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDtgdFSKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEasNYHPARSGRNHLRVLAAAAG---LSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:PRK13644 81 IVFQ--NPETQFVGRTVEEDLAFGPEnlcLPPieirKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 150 VLDEPANGLDPE-GIRWLRNfLRSFAGRGGTVFVSSHVLGEMsQLADEVVIIHRGKLV----AHQSVAELTVQAAGATrv 224
Cdd:PRK13644 159 IFDEVTSMLDPDsGIAVLER-IKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVlegePENVLSDVSLQTLGLT-- 234
|
250
....*....|....*..
gi 1671887361 225 rSPRADELLARLRAGGI 241
Cdd:PRK13644 235 -PPSLIELAENLKMHGV 250
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-207 |
8.05e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 86.34 E-value: 8.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrelaeplrtvgavl 79
Cdd:COG4618 331 LSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGA---------------- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRnHLRVLAAAAGLSPGRVDEVLA-----EVELSGAAKRRVG----------GY-----------SLGMR 133
Cdd:COG4618 395 DLSQWDREELGR-HIGYLPQDVELFDGTIAENIArfgdaDPEKVVAAAKLAGvhemilrlpdGYdtrigeggarlSGGQR 473
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 134 QRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH---VLgemsQLADEVVIIHRGKLVA 207
Cdd:COG4618 474 QRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHrpsLL----AAVDKLLVLRDGRVQA 546
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-205 |
1.26e-18 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 81.32 E-value: 1.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTkrfrSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRelaepLRTVGAVLEAS 82
Cdd:cd03215 6 EVRGLS----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT-----RRSPRDAIRAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 83 NYHPARSGRNHlrvlaaaaGLSPGR--VDEVLAEVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:cd03215 77 IAYVPEDRKRE--------GLVLDLsvAENIALSSLLSG-----------GNQQKVVLARWLARDPRVLILDEPTRGVDV 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 161 EGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:cd03215 138 GAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-208 |
1.28e-18 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 81.83 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAV-DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLA--LPTSGRATVSGRRyRELAEPLRTVGAV 78
Cdd:cd03213 9 LTVTVKSSPSKSGKQLlKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRtgLGVSGEVLINGRP-LDKRSFRKIIGYV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYHParsgrnHLRVLAAaaglspgrvdevlaeveLSGAAKRRvgGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:cd03213 88 PQDDILHP------TLTVRET-----------------LMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGGTVFVSSH-VLGEMSQLADEVVIIHRGKLVAH 208
Cdd:cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHqPSSEIFELFDKLLLLSQGRVIYF 193
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-214 |
1.51e-18 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 82.45 E-value: 1.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTV----G 76
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIrqeaG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARS-------GRNHLRVLAAAAGLSPGRvdEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:PRK09493 81 MVFQQFYLFPHLTalenvmfGPLRVRGASKEEAEKQAR--ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 150 VLDEPANGLDPEgirwLRN----FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK09493 159 LFDEPTSALDPE----LRHevlkVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-241 |
2.68e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 82.86 E-value: 2.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFR-----SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV------SGRRYRELA 69
Cdd:PRK13643 1 MIKFEKVNYTYQpnspfASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVgdivvsSTSKQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 EPLRTVGAVLEASnyhpaRSGRNHLRVLAAAA------GLSPGRVDEVLAE-VELSGAAK----RRVGGYSLGMRQRLSV 138
Cdd:PRK13643 81 PVRKKVGVVFQFP-----ESQLFEETVLKDVAfgpqnfGIPKEKAEKIAAEkLEMVGLADefweKSPFELSGGQMRRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL--TV 216
Cdd:PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVfqEV 235
|
250 260
....*....|....*....|....*
gi 1671887361 217 QAAGATRVRSPRADELLARLRAGGI 241
Cdd:PRK13643 236 DFLKAHELGVPKATHFADQLQKTGA 260
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-241 |
3.03e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 82.37 E-value: 3.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT--AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE--LAEPLRTVGA 77
Cdd:PRK13635 6 IRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEetVWDVRRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLE-ASNYHPARSGRNHLrvlaaAAGLSPG---------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK13635 86 VFQnPDNQFVGATVQDDV-----AFGLENIgvpreemveRVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 148 LLVLDEPANGLDPEG-------IRWLRNflrsfaGRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEltVQAAG 220
Cdd:PRK13635 161 IIILDEATSMLDPRGrrevletVRQLKE------QKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEE--IFKSG 231
|
250 260
....*....|....*....|....*
gi 1671887361 221 ATRVR----SPRADELLARLRAGGI 241
Cdd:PRK13635 232 HMLQEigldVPFSVKLKELLKRNGI 256
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-200 |
3.74e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 84.26 E-value: 3.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL-AEPLRTVGAVL 79
Cdd:TIGR02857 322 LEFSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAdADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGRNHLRVlaAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-----------SLGMRQRLSVAAALLGEPEL 148
Cdd:TIGR02857 402 PQHPFLFAGTIAENIRL--ARPDASDAEIREALERAGLDEFVAALPQGLdtpigeggaglSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 149 LVLDEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLgEMSQLADEVVII 200
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRL-ALAALADRIVVL 529
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-207 |
4.21e-18 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 81.23 E-value: 4.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATaVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNH----LRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03299 80 YALFPHMTVYKNiaygLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 158 LDPEGIRWLRNFLRsFAGR--GGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:cd03299 160 LDVRTKEKLREELK-KIRKefGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-214 |
4.91e-18 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 80.99 E-value: 4.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFR--SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYrELAEPL---RTVG 76
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL-ALADPAwlrRQVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEAS---------NYHPARSGRNHLRVLAAA--AGLS------PGRVDEVLAEvelsgaakrRVGGYSLGMRQRLSVA 139
Cdd:cd03252 80 VVLQENvlfnrsirdNIALADPGMSMERVIEAAklAGAHdfiselPEGYDTIVGE---------QGAGLSGGQRQRIAIA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWL-RNFLRSFAGRggTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03252 151 RALIHNPRILIFDEATSALDYESEHAImRNMHDICAGR--TVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
33-206 |
6.48e-18 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 82.16 E-value: 6.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 33 LGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHParsgrnHLRVLAAAA-GLS------- 104
Cdd:TIGR01187 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP------HMTVEENVAfGLKmrkvpra 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 105 --PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFV 182
Cdd:TIGR01187 76 eiKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155
|
170 180
....*....|....*....|....*
gi 1671887361 183 -SSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:TIGR01187 156 fVTHDQEEAMTMSDRIAIMRKGKIA 180
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-185 |
7.90e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 79.92 E-value: 7.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYrelaeplrTVGAVLE 80
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--------DDPDVAE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNY-------HPARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDE 153
Cdd:PRK13539 74 ACHYlghrnamKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153
|
170 180 190
....*....|....*....|....*....|..
gi 1671887361 154 PANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
2-185 |
9.67e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.46 E-value: 9.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR----ATVSGRRYRELAEPLRTVGa 77
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRvllnGGPLDFQRDSIARGLLYLG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 vlEASNYHPARSGRNHLRVLAAAAGLSpgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:cd03231 80 --HAPGIKTTLSVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155
|
170 180
....*....|....*....|....*...
gi 1671887361 158 LDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
14-205 |
1.35e-17 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 82.78 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 14 ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL-AEPL-RTVGavleasnYHP----- 86
Cdd:TIGR01842 331 KPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWdRETFgKHIG-------YLPqdvel 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 ---------ARSGRN--HLRVLAAA--AGlspgrVDEVLAEVELSGAAKRRVGGYSL--GMRQRLSVAAALLGEPELLVL 151
Cdd:TIGR01842 404 fpgtvaeniARFGENadPEKIIEAAklAG-----VHELILRLPDGYDTVIGPGGATLsgGQRQRIALARALYGDPKLVVL 478
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGeMSQLADEVVIIHRGKL 205
Cdd:TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS-LLGCVDKILVLQDGRI 531
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-207 |
1.37e-17 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 80.70 E-value: 1.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA-TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----------RYRELA 69
Cdd:PRK15056 7 IVVNDVTVTWRNGhTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQptrqalqknlvAYVPQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 EPLRTVGAVLEASNYHPARSGrnHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:PRK15056 87 EEVDWSFPVLVEDVVMMGRYG--HMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 150 VLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIhRGKLVA 207
Cdd:PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-159 |
1.68e-17 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 81.53 E-value: 1.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEA 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHParsgrnHLRVLAAAA-GL----SPG-----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:PRK09452 95 YALFP------HMTVFENVAfGLrmqkTPAaeitpRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168
|
....*...
gi 1671887361 152 DEPANGLD 159
Cdd:PRK09452 169 DESLSALD 176
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-159 |
2.17e-17 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 80.93 E-value: 2.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF---------RSAT--AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RY 65
Cdd:COG4608 8 LEVRDLKKHFpvrgglfgrTVGVvkAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQditglSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 66 RELAE-----------------PLRTVGAVLEASnyhparsgrnhLRV--LAAAAGLSpGRVDEVLAEVELSGAAKRRvg 126
Cdd:COG4608 88 RELRPlrrrmqmvfqdpyaslnPRMTVGDIIAEP-----------LRIhgLASKAERR-ERVAELLELVGLRPEHADR-- 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 1671887361 127 gY----SLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:COG4608 154 -YphefSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
17-214 |
2.73e-17 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 79.36 E-value: 2.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALP----TSGRATVSGRRYRELAEPLRTVGAVLEA--SNYHPARSG 90
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALRGRKIATIMQNprSAFNPLHTM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 91 RNHLRVLAAAAGLsPGRVDEVLAEVELSGA--AKRRVGGY----SLGMRQRLSVAAALLGEPELLVLDEPANGLDP-EGI 163
Cdd:PRK10418 99 HTHARETCLALGK-PADDATLTAALEAVGLenAARVLKLYpfemSGGMLQRMMIALALLCEAPFIIADEPTTDLDVvAQA 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 164 RWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
16-214 |
2.87e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 79.84 E-value: 2.87e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTS---GRATVSGRRYRE--LAEPLRTVGAVLEA--SNYHPAR 88
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLTAktVWDIREKVGIVFQNpdNQFVGAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 89 SGRNhlrvlaAAAGLSpGR----------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:PRK13640 102 VGDD------VAFGLE-NRavprpemikiVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13640 175 DPAGKEQILKLIRKLKKKNNlTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEI 230
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
18-214 |
3.12e-17 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 78.81 E-value: 3.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLR-TVGAV----------------- 78
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTlDSLRrAIGVVpqdtvlfndtigyniry 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 --LEASN---YHPARSGRNHLRVLAaaaglSPGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03253 98 grPDATDeevIEAAKAAQIHDKIMR-----FPDGYDTIVGErgLKLSG-----------GEKQRVAIARAILKNPPILLL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 152 DEPANGLDPEGIRWL-RNFLRSFAGRggTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03253 162 DEATSALDTHTEREIqAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEEL 222
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-159 |
3.59e-17 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 79.14 E-value: 3.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF----RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyreLAEPLRTVG 76
Cdd:COG4525 3 MLTVRHVSVRYpgggQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVP---VTGPGADRG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVPKAerraRAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMD 159
|
....*..
gi 1671887361 153 EPANGLD 159
Cdd:COG4525 160 EPFGALD 166
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
5-206 |
3.63e-17 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 79.22 E-value: 3.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 5 ERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR--------ATVSGRRYRELAE------ 70
Cdd:cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKvlidgqdiAAMSRKELRELRRkkismv 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 -------PLRTVgavLEASNYHPARSGRNHLRVLAAAAglspgrvdEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL 143
Cdd:cd03294 108 fqsfallPHRTV---LENVAFGLEVQGVPRAEREERAA--------EALELVGLEGWEHKYPDELSGGMQQRVGLARALA 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 144 GEPELLVLDEPANGLDPEGIRWLRN-FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03294 177 VDPDILLMDEAFSALDPLIRREMQDeLLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
15-207 |
4.41e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 76.97 E-value: 4.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 15 TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHPARSGRNHL 94
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 95 rvlaaaaglspGRvdevlaevELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFA 174
Cdd:cd03247 96 -----------GR--------RFSG-----------GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145
|
170 180 190
....*....|....*....|....*....|...
gi 1671887361 175 gRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVA 207
Cdd:cd03247 146 -KDKTLIWITHHLTGIEH-MDKILFLENGKIIM 176
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
13-257 |
5.43e-17 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 80.78 E-value: 5.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 13 SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLR-TVGAVL-EASNYhpARS 89
Cdd:PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTrASLRrNIAVVFqDAGLF--NRS 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 90 GRNHLRVlaaaaglspGRVDEVLAEVELSGAA-------KRRVGGY-----------SLGMRQRLSVAAALLGEPELLVL 151
Cdd:PRK13657 425 IEDNIRV---------GRPDATDEEMRAAAERaqahdfiERKPDGYdtvvgergrqlSGGERQRLAIARALLKDPPILIL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAELtVQAAGatrvrspRADE 231
Cdd:PRK13657 496 DEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDEL-VARGG-------RFAA 565
|
250 260
....*....|....*....|....*.
gi 1671887361 232 LlarLRAGGIDAEPTEAGALAVHAPP 257
Cdd:PRK13657 566 L---LRAQGMLQEDERRKQPAAEGAN 588
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-185 |
5.60e-17 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 80.93 E-value: 5.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVsGR--------RYRELAEPLR 73
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GEtvklayvdQSRDALDPNK 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLeaSNyhparsGRNHLRVlaaaaglspGRVdEV-----LAEVELSGA-AKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK11819 404 TVWEEI--SG------GLDIIKV---------GNR-EIpsrayVGRFNFKGGdQQKKVGVLSGGERNRLHLAKTLKQGGN 465
|
170 180 190
....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSH 185
Cdd:PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP---GCAVVISH 500
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1-214 |
7.13e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 79.12 E-value: 7.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV--------------- 60
Cdd:PRK13631 21 ILRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkknnheli 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 61 ---SGRRYRELAEPLRTVGAVLEASNYH-------------PARSG--RNHLRVLAA----AAGLSPGRVDEvlAEVELS 118
Cdd:PRK13631 101 tnpYSKKIKNFKELRRRVSMVFQFPEYQlfkdtiekdimfgPVALGvkKSEAKKLAKfylnKMGLDDSYLER--SPFGLS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 119 GAAKRRVggyslgmrqrlSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVV 198
Cdd:PRK13631 179 GGQKRRV-----------AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247
|
250
....*....|....*.
gi 1671887361 199 IIHRGKLVAHQSVAEL 214
Cdd:PRK13631 248 VMDKGKILKTGTPYEI 263
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
16-206 |
7.22e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 78.63 E-value: 7.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV------SGRRYRELAEPLRTVG------------- 76
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVddtlitSTSKNKDIKQIRKKVGlvfqfpesqlfee 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARSGRNHLRVLAAA-AGLSPGRVDEVLAE---VELSGAAKRRVggyslgmrqrlSVAAALLGEPELLVLD 152
Cdd:PRK13649 102 TVLKDVAFGPQNFGVSQEEAEALArEKLALVGISESLFEknpFELSGGQMRRV-----------AIAGILAMEPKILVLD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK13649 171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-214 |
9.67e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 78.23 E-value: 9.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT---AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE--LAEPLRTV 75
Cdd:PRK13650 4 IIEVKNLTFKYKEDQekyTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEenVWDIRHKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLEASNyhparsgrNHLrVLAA-----AAGLS---------PGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAA 141
Cdd:PRK13650 84 GMVFQNPD--------NQF-VGATveddvAFGLEnkgipheemKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSqLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQmTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPREL 227
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
16-214 |
1.02e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 78.52 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV------SGRRYRELaEPLRT-VGAVLE-------- 80
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIgervitAGKKNKKL-KPLRKkVGIVFQfpehqlfe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ----------ASNYH-PARSGRNHLRVLAAAAGLSPgrvdEVLAE--VELSGAAKRRVggyslgmrqrlSVAAALLGEPE 147
Cdd:PRK13634 101 etvekdicfgPMNFGvSEEDAKQKAREMIELVGLPE----ELLARspFELSGGQMRRV-----------AIAGVLAMEPE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRN-FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13634 166 VLVLDEPTAGLDPKGRKEMMEmFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
1-159 |
1.07e-16 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 77.01 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAE----PL 72
Cdd:TIGR02211 1 LLKCENLGKRYQEGkldtRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSneraKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 R--TVGAVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:TIGR02211 81 RnkKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKeakeRAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160
|
170
....*....|...
gi 1671887361 147 ELLVLDEPANGLD 159
Cdd:TIGR02211 161 SLVLADEPTGNLD 173
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-222 |
1.24e-16 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 80.17 E-value: 1.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG-----RRYRElaeplrtvg 76
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGgdmadARHRR--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYHPARSGRN---------HLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALL 143
Cdd:NF033858 73 AVCPRIAYMPQGLGKNlyptlsvfeNLDFFGRLFGQDAAerrrRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 144 GEPELLVLDEPANGLDP----------EGIRwlrnflrsfAGRGG-TVFVSSHVLGEMSQLaDEVVIIHRGKLVAHQSVA 212
Cdd:NF033858 153 HDPDLLILDEPTTGVDPlsrrqfweliDRIR---------AERPGmSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPA 222
|
250
....*....|
gi 1671887361 213 ELTVQAAGAT 222
Cdd:NF033858 223 ELLARTGADT 232
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-214 |
1.52e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 77.26 E-value: 1.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRY--------RELAEPLR 73
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL-IELYPEARVSGEVYldgqdifkMDVIELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLEASNYHPARS-------GRNHLRVLAAAAGLSPgRVDEVLAEVELSGAAKRRV----GGYSLGMRQRLSVAAAL 142
Cdd:PRK14247 83 RVQMVFQIPNPIPNLSifenvalGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVKDRLdapaGKLSGGQQQRLCIARAL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-207 |
1.55e-16 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 79.12 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRTVGAV 78
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDdvEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 -------LEASNYHPARSGRN-HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK09536 83 pqdtslsFEFDVRQVVEMGRTpHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 151 LDEPANGLD-PEGIRWLRnFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:PRK09536 163 LDEPTASLDiNHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
16-214 |
2.18e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 78.96 E-value: 2.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYRELAE----PLR------------------ 73
Cdd:COG4172 301 AVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRL-IPSEGEIRFDGQDLDGLSRralrPLRrrmqvvfqdpfgslsprm 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVGAVLEasnyhparSGrnhLRVLAAaaGLSP----GRVDEVLAEVELSGAAKRRvggY----SLGMRQRLSVAAALLGE 145
Cdd:COG4172 380 TVGQIIA--------EG---LRVHGP--GLSAaerrARVAEALEEVGLDPAARHR---YphefSGGQRQRIAIARALILE 443
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 146 PELLVLDEPANGLDpegiRWLR----NFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:COG4172 444 PKLLVLDEPTSALD----VSVQaqilDLLRDLQREHGLayLFI-SHDLAVVRALAHRVMVMKDGKVVEQGPTEQV 513
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
18-185 |
2.18e-16 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 76.00 E-value: 2.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVL-EASNYHPARSGRNHLRV 96
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLgHQPGIKTELTALENLRF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 97 LAAAAG-LSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAG 175
Cdd:PRK13538 98 YQRLHGpGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177
|
170
....*....|
gi 1671887361 176 RGGTVFVSSH 185
Cdd:PRK13538 178 QGGMVILTTH 187
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-215 |
2.34e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.82 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPT---SGRATVSGRR------------- 64
Cdd:PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHgtyEGEIIFEGEElqasnirdterag 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 65 ----YRELA-EPLRTVGAVLEASNyHPARSGR-NHLRVLAaaaglspgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSV 138
Cdd:PRK13549 84 iaiiHQELAlVKELSVLENIFLGN-EITPGGImDYDAMYL--------RAQKLLAQLKLDINPATPVGNLGLGQQQLVEI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-225 |
4.44e-16 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 76.34 E-value: 4.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG---------RRY--RELA 69
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGenipamsrsRLYtvRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 EPLRTVGAVLEASNY--HPARSGRNHLRVLAAaagLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK11831 87 SMLFQSGALFTDMNVfdNVAYPLREHTQLPAP---LLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELtvQAAGATRVR 225
Cdd:PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL--QANPDPRVR 240
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-242 |
5.28e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 76.28 E-value: 5.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF------RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG---RRYRELAEP 71
Cdd:PRK13633 4 MIKCKNVSYKYesneesTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGldtSDEENLWDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEasnyhparsgrNHLRVLAAAA------------GLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQR 135
Cdd:PRK13633 84 RNKAGMVFQ-----------NPDNQIVATIveedvafgpenlGIPPeeirERVDESLKKVGMYEYRRHAPHLLSGGQKQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGiTIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
250 260 270
....*....|....*....|....*....|
gi 1671887361 215 --TVQAAGATRVRSPRADELLARLRAGGID 242
Cdd:PRK13633 232 fkEVEMMKKIGLDVPQVTELAYELKKEGVD 261
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-207 |
5.66e-16 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 75.74 E-value: 5.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYRELAEP-LRTVGAVLEASNYHPARSGRNHLRVLA 98
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAeLARHRAYLSQQQTPPFAMPVFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMRQRLSVAAALL-----GEPE--LLVLDEPANGLDPEGIRWLR 167
Cdd:PRK03695 94 QPDKTRTEAVASALNEVaealGLDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPAgqLLLLDEPMNSLDVAQQAALD 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1671887361 168 NFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-214 |
5.69e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 77.80 E-value: 5.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLP-----TSGRATVSGRRYRELAE- 70
Cdd:COG4172 6 LLSVEDLSVAFGQGggtvEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRL-LPdpaahPSGSILFDGQDLLGLSEr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 ----------------------PLRTVGA-VLEASNYHPARSGRnhlrvlAAAAglspgRVDEVLAEVELSgAAKRRVGG 127
Cdd:COG4172 85 elrrirgnriamifqepmtslnPLHTIGKqIAEVLRLHRGLSGA------AARA-----RALELLERVGIP-DPERRLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 128 Y----SLGMRQRLSVAAALLGEPELLVLDEPANGLDP----EGIRWLRNFLRSfagRGGTVFVSSHVLGEMSQLADEVVI 199
Cdd:COG4172 153 YphqlSGGQRQRVMIAMALANEPDLLIADEPTTALDVtvqaQILDLLKDLQRE---LGMALLLITHDLGVVRRFADRVAV 229
|
250
....*....|....*
gi 1671887361 200 IHRGKLVAHQSVAEL 214
Cdd:COG4172 230 MRQGEIVEQGPTAEL 244
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-203 |
9.14e-16 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 75.43 E-value: 9.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGL----ALPTS-----GRAT-VSGRRYRELAE 70
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLitgdKSAGShiellGRTVqREGRLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 PLRTVGAVLEASNYhparsgRNHL----RVLAAAAGLSP--------------GRVDEVLAEVELSGAAKRRVGGYSLGM 132
Cdd:PRK09984 84 SRANTGYIFQQFNL------VNRLsvleNVLIGALGSTPfwrtcfswftreqkQRALQALTRVGMVHFAHQRVSTLSGGQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 133 RQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRG 203
Cdd:PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGiTVVVTLHQVDYALRYCERIVALRQG 229
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-242 |
1.24e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 75.13 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDL---SFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY--RELAEPLRTV 75
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQLngvSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLtaENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 GAVLE-ASNYHPARSGRNHLRVLAAAAGLSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK13642 84 GMVFQnPDNQFVGATVEDDVAFGMENQGIPReemiKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 151 LDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAELTVQAAGATRV--RSP 227
Cdd:PRK13642 164 LDESTSMLDPTGRQEIMRVIHEIKEKYQlTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDMVEIglDVP 242
|
250
....*....|....*
gi 1671887361 228 RADELLARLRAGGID 242
Cdd:PRK13642 243 FSSNLMKDLRKNGFD 257
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
8-215 |
2.22e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 76.10 E-value: 2.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 8 TKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--RYRELAEPLRTVGAVLE----- 80
Cdd:PRK11288 11 GKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQemRFASTTAALAAGVAIIYqelhl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ------ASNYH----PARSGRNHLRVLAAaaglspgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK11288 91 vpemtvAENLYlgqlPHKGGIVNRRLLNY-------EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 151 LDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVA-HQSVAELT 215
Cdd:PRK11288 164 FDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAtFDDMAQVD 229
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-234 |
3.82e-15 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 73.46 E-value: 3.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaeplRTVGAVLEA 81
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLV----RDKDGQLKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SNYHPARSGRNHL------------------------RVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-SLGMRQRL 136
Cdd:PRK10619 82 ADKNQLRLLRTRLtmvfqhfnlwshmtvlenvmeapiQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHlSGGQQQRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTV 216
Cdd:PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
250
....*....|....*...
gi 1671887361 217 QAagatrvRSPRADELLA 234
Cdd:PRK10619 242 NP------QSPRLQQFLK 253
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
34-206 |
4.25e-15 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 75.37 E-value: 4.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 34 GPNGAGKTTTLRVLLGLALPTSGRAT-----------------VSGRRYRELAEPLRTVGAVLEAsnYH---------PA 87
Cdd:PRK11147 36 GRNGAGKSTLMKILNGEVLLDDGRIIyeqdlivarlqqdpprnVEGTVYDFVAEGIEEQAEYLKR--YHdishlvetdPS 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 88 RSGRNHLRVLAAAAGLSPG-----RVDEVLAEVELSGAAKrrVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEG 162
Cdd:PRK11147 114 EKNLNELAKLQEQLDHHNLwqlenRINEVLAQLGLDPDAA--LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1671887361 163 IRWLRNFLRSFagRGGTVFVsSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK11147 192 IEWLEGFLKTF--QGSIIFI-SHDRSFIRNMATRIVDLDRGKLV 232
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
19-214 |
4.72e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 75.14 E-value: 4.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPL--RTVGAV-LEASNYhpARSGRNHLr 95
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYlhRQVALVgQEPVLF--SGSVRENI- 575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 96 vlaaAAGLSPGRVDEVLAEVELSGAAKRRVG---GY-----------SLGMRQRLSVAAALLGEPELLVLDEPANGLDPE 161
Cdd:TIGR00958 576 ----AYGLTDTPDEEIMAAAKAANAHDFIMEfpnGYdtevgekgsqlSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 162 GIRWLRNfLRSFAGRggTVFVSSHVLgEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR00958 652 CEQLLQE-SRSRASR--TVLLIAHRL-STVERADQILVLKKGSVVEMGTHKQL 700
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-195 |
5.41e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 73.28 E-value: 5.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVL--LGLALPT---SGRATVSGRR-YRELAEPL--- 72
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrLNDLIPGfrvEGKVTFHGKNlYAPDVDPVevr 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVGAVLEASNYHPaRSGRNHLRVLAAAAGLSpGRVDEvLAEVELSGAA-------KRRVGGYSL--GMRQRLSVAAALL 143
Cdd:PRK14243 91 RRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDE-LVERSLRQAAlwdevkdKLKQSGLSLsgGQQQRLCIARAIA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 144 GEPELLVLDEPANGLDPEGIRWLRNFLRSFaGRGGTVFVSSHVLGEMSQLAD 195
Cdd:PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSD 218
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-208 |
5.44e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 73.10 E-value: 5.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaeplrtvgavle 80
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL------------ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 aSNYHPARSGR----NHLR----------VLAAA---------AGL--SPG----------RVDEVLAEVELSGAAKRRV 125
Cdd:PRK11300 73 -PGHQIARMGVvrtfQHVRlfremtvienLLVAQhqqlktglfSGLlkTPAfrraesealdRAATWLERVGLLEHANRQA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 126 GGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNvTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
....
gi 1671887361 205 LVAH 208
Cdd:PRK11300 232 PLAN 235
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-220 |
6.21e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 74.68 E-value: 6.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLT-KRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG--------RRYREL----- 68
Cdd:COG3845 259 EVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGeditglspRERRRLgvayi 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 69 -AEPLRTvGAVLEAS--------NYHPARSGRNHLRVLAAAAGLSPGRVDE--VLAevelsGAAKRRVGGYSLGMRQRLS 137
Cdd:COG3845 339 pEDRLGR-GLVPDMSvaenlilgRYRRPPFSRGGFLDRKAIRAFAEELIEEfdVRT-----PGPDTPARSLSGGNQQKVI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:COG3845 413 LARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEATRE 492
|
...
gi 1671887361 218 AAG 220
Cdd:COG3845 493 EIG 495
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-207 |
6.80e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 73.10 E-value: 6.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT--AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-RELAEPLRT--- 74
Cdd:PRK13632 7 MIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIsKENLKEIRKkig 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 ----------VGAVLEASnyhparsgrnhlrvlaAAAGL-----SPGR----VDEVLAEVELSGAAKRRVGGYSLGMRQR 135
Cdd:PRK13632 87 iifqnpdnqfIGATVEDD----------------IAFGLenkkvPPKKmkdiIDDLAKKVGMEDYLDKEPQNLSGGQKQR 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVS-SHVLGEMSqLADEVVIIHRGKLVA 207
Cdd:PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISiTHDMDEAI-LADKVIVFSEGKLIA 222
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
21-205 |
7.98e-15 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 71.82 E-value: 7.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 21 SFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHPARSGRNHLrvlaaA 100
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI-----G 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 101 AGLSPG---------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:TIGR01277 93 LGLHPGlklnaeqqeKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVK 172
|
170 180 190
....*....|....*....|....*....|....*
gi 1671887361 172 SFAG-RGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:TIGR01277 173 QLCSeRQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
20-185 |
1.79e-14 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 70.65 E-value: 1.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRElAEPLRTVGAVLEASNYHPARSGRNHLRVLAA 99
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR-GDRSRFMAYLGHLPGLKADLSTLENLHFLCG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 100 AAGLSPGRV-DEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG 178
Cdd:PRK13543 109 LHGRRAKQMpGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGG 188
|
....*..
gi 1671887361 179 TVFVSSH 185
Cdd:PRK13543 189 AALVTTH 195
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-202 |
1.87e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 71.30 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAtvsgrryrELAEPLRtVGAVLE 80
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI--------KRNGKLR-IGYVPQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARSgRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:PRK09544 75 KLYLDTTLP-LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1671887361 161 EG-------IRWLRNFLrsfagrGGTVFVSSHVLGEMSQLADEVVIIHR 202
Cdd:PRK09544 154 NGqvalydlIDQLRREL------DCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-224 |
1.89e-14 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 71.64 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA---------TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-- 69
Cdd:PRK10419 3 LLNVSGLSHHYAHGglsgkhqhqTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNra 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 --------------------EPLRTVGAVLEasnyHPARsgrnHLRVLAAAAGLSpgRVDEVLAEVELSGA-AKRRVGGY 128
Cdd:PRK10419 83 qrkafrrdiqmvfqdsisavNPRKTVREIIR----EPLR----HLLSLDKAERLA--RASEMLRAVDLDDSvLDKRPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 129 SLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFV-SSHVLGEMSQLADEVVIIHRGKLVA 207
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLfITHDLRLVERFCQRVMVMDNGQIVE 232
|
250
....*....|....*..
gi 1671887361 208 HQSVAELTVQAAGATRV 224
Cdd:PRK10419 233 TQPVGDKLTFSSPAGRV 249
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
13-205 |
2.47e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 71.32 E-value: 2.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 13 SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR-----ATVSGRRYRELAEPL---------RTVGAV 78
Cdd:PRK13648 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEifynnQAITDDNFEKLRKHIgivfqnpdnQFVGSI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEasnYHPARSGRNHlrvlAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:PRK13648 101 VK---YDVAFGLENH----AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGGTVFVS-SHVLGEMSQlADEVVIIHRGKL 205
Cdd:PRK13648 174 DPDARQNLLDLVRKVKSEHNITIISiTHDLSEAME-ADHVIVMNKGTV 220
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-217 |
2.92e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 72.57 E-value: 2.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYRELAEP--LRTVGAVleASNYH-PARSGRNHlrV 96
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPEswRKHLSWV--GQNPQlPHGTLRDN--V 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 97 LAAAAGLSPGRVDEVLAEVE-----------LSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRW 165
Cdd:PRK11174 444 LLGNPDASDEQLQQALENAWvseflpllpqgLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL 523
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 166 LRNFLRSfAGRGGTVFVSSHVLGEMSQLaDEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:PRK11174 524 VMQALNA-ASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQA 573
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
20-185 |
7.46e-14 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 71.50 E-value: 7.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFsVPKGRItGFLGPNGAGKTTTLRVLLGLALPTSGRATVS-GRRYRELAE-----PLRTV-GAVLEAsnYHPARSGRN 92
Cdd:TIGR03719 26 LSF-FPGAKI-GVLGLNGAGKSTLLRIMAGVDKDFNGEARPQpGIKVGYLPQepqldPTKTVrENVEEG--VAEIKDALD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 HLRVLAAAAGLSPGRVDEVLAE-------------------VELSGAAKR------RVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:TIGR03719 102 RFNEISAKYAEPDADFDKLAAEqaelqeiidaadawdldsqLEIAMDALRcppwdaDVTKLSGGERRRVALCRLLLSKPD 181
|
170 180 190
....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSH 185
Cdd:TIGR03719 182 MLLLDEPTNHLDAESVAWLERHLQEYP---GTVVAVTH 216
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-218 |
9.63e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 70.82 E-value: 9.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRfrsaTAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYReLAEPL---------- 72
Cdd:COG1129 258 EVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVR-IRSPRdairagiayv 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 ----RTVGAVLEASnyhparSGRN----HLRVLAAAAGLSPGRVDEVLAEV--ELS---GAAKRRVGGYSLGMRQRLSVA 139
Cdd:COG1129 333 pedrKGEGLVLDLS------IRENitlaSLDRLSRGGLLDRRRERALAEEYikRLRiktPSPEQPVGNLSGGNQQKVVLA 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRG-GTVFVSSHvLGEMSQLADEVVIIHRGKLVAHQSVAELTVQA 218
Cdd:COG1129 407 KWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGkAVIVISSE-LPELLGLSDRILVMREGRIVGELDREEATEEA 485
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
16-217 |
1.10e-13 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 71.07 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGrryrelAEPLRTVGAVLEASnyhpaRSGRNHLR 95
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAISSGLNGQ-----LTGIENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 96 VLAAAAGLSPGRVDEVLAEV-ELSGAAK---RRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:PRK13545 108 LKGLMMGLTKEKIKEIIPEIiEFADIGKfiyQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMN 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 172 SFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:PRK13545 188 EFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
24-201 |
1.13e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 70.97 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 24 VPK-GRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG------RRYR--ELAEPLR--------------------- 73
Cdd:COG1245 95 VPKkGKVTGILGPNGIGKSTALKILSGELKPNLGDYDEEPswdevlKRFRgtELQDYFKklangeikvahkpqyvdlipk 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 ----TVGAVLEASNYHparsgrnhlrvlaaaaglspGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:COG1245 175 vfkgTVRELLEKVDER--------------------GKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 150 VLDEPANGLD-PEGIRWLRnFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIH 201
Cdd:COG1245 235 FFDEPSSYLDiYQRLNVAR-LIRELAEEGKYVLVVEHDLAILDYLADYVHILY 286
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-214 |
1.17e-13 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 70.90 E-value: 1.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRF--RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE--LAEPLRTVGA 77
Cdd:TIGR02203 331 VEFRNVTFRYpgRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADytLASLRRQVAL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLE---------ASNY---HPARSGRNHLRVLAAAAGL------SPGRVDEVLAE--VELSGaakrrvggyslGMRQRLS 137
Cdd:TIGR02203 411 VSQdvvlfndtiANNIaygRTEQADRAEIERALAAAYAqdfvdkLPLGLDTPIGEngVLLSG-----------GQRQRLA 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMsQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNEL 554
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
19-213 |
1.36e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 69.90 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSV----PKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE------LAEPLRTVGAVLEASNYHPAR 88
Cdd:PRK11144 12 DLCLTVnltlPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDaekgicLPPEKRRIGYVFQDARLFPHY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 89 SGRNHLRVlaaaaGLSPGRVDEVLAEVELSGAA---KRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRW 165
Cdd:PRK11144 92 KVRGNLRY-----GMAKSMVAQFDKIVALLGIEpllDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 166 LRNFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAE 213
Cdd:PRK11144 167 LLPYLERLAREINIpiLYV-SHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-160 |
1.75e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 68.96 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT-----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG---------RRYR 66
Cdd:COG1101 1 MLELKNLSKTFNPGTvnekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGkdvtklpeyKRAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 ELA----EPLR-TVGA--VLE----ASNyhpaRSGRNHLRvlaaaAGLSPGRVD---EVLAEVELsGAAKR---RVGGYS 129
Cdd:COG1101 81 YIGrvfqDPMMgTAPSmtIEEnlalAYR----RGKRRGLR-----RGLTKKRRElfrELLATLGL-GLENRldtKVGLLS 150
|
170 180 190
....*....|....*....|....*....|.
gi 1671887361 130 LGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:COG1101 151 GGQRQALSLLMATLTKPKLLLLDEHTAALDP 181
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-206 |
1.82e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 68.72 E-value: 1.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVL-----LGLALPTSGRATVSGRR-YRELAEPL--- 72
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFnrlleLNEEARVEGEVRLFGRNiYSPDVDPIevr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVGAVLEASNYHPARSGRNHLRV------LAAAAGLSPGRVDEVLAEVELSGAAKRRVGGY----SLGMRQRLSVAAAL 142
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIgvklngLVKSKKELDERVEWALKKAALWDEVKDRLNDYpsnlSGGQRQRLVIARAL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-214 |
1.94e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 68.66 E-value: 1.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSAT---------AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyrelaep 71
Cdd:PRK15112 4 LLEVRNLSKTFRYRTgwfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 lrtvgavLEASNYHpARSGRNHLRVLAAAAGLSP-GRVDEVL-----AEVELSGAAK--------RRVG------GY--- 128
Cdd:PRK15112 77 -------LHFGDYS-YRSQRIRMIFQDPSTSLNPrQRISQILdfplrLNTDLEPEQRekqiietlRQVGllpdhaSYyph 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 129 --SLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT--VFVSSHvLGEMSQLADEVVIIHRGK 204
Cdd:PRK15112 149 mlAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGIsyIYVTQH-LGMMKHISDQVLVMHQGE 227
|
250
....*....|
gi 1671887361 205 LVAHQSVAEL 214
Cdd:PRK15112 228 VVERGSTADV 237
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-215 |
2.18e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 69.85 E-value: 2.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLalptSGRATVSGRRYRElaeplrtvGAVLE 80
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV----YPHGTWDGEIYWS--------GSPLK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPA-RSGRNHL-RVLAAAAGLS-------------PG----------RVDEVLAEVELSGA-AKRRVGGYSLGMRQ 134
Cdd:TIGR02633 69 ASNIRDTeRAGIVIIhQELTLVPELSvaeniflgneitlPGgrmaynamylRAKNLLRELQLDADnVTRPVGDYGGGQQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 135 RLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228
|
.
gi 1671887361 215 T 215
Cdd:TIGR02633 229 S 229
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-215 |
2.35e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 69.83 E-value: 2.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA-----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVS-GRRYRELAEP--- 71
Cdd:TIGR03269 279 IIKVRNVSKRYISVdrgvvKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPgpd 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 -----LRTVGAVLEASNYHPARS-----------------GRNHLRVLAAAAGLSPGRVDEVLAEV--ELSGaakrrvgg 127
Cdd:TIGR03269 359 grgraKRYIGILHQEYDLYPHRTvldnlteaiglelpdelARMKAVITLKMVGFDEEKAEEILDKYpdELSE-------- 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 128 yslGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRN-FLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:TIGR03269 431 ---GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
250
....*....|...
gi 1671887361 207 ----AHQSVAELT 215
Cdd:TIGR03269 508 kigdPEEIVEELT 520
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
13-187 |
2.36e-13 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 70.08 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 13 SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHP-ARSGR 91
Cdd:TIGR02868 347 APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLfDTTVR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 92 NHLRVlaAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-----------SLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:TIGR02868 427 ENLRL--ARPDATDEELWAALERVGLADWLRALPDGLdtvlgeggarlSGGERQRLALARALLADAPILLLDEPTEHLDA 504
|
170 180
....*....|....*....|....*..
gi 1671887361 161 EGIRWLRNFLRSfAGRGGTVFVSSHVL 187
Cdd:TIGR02868 505 ETADELLEDLLA-ALSGRTVVLITHHL 530
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-215 |
2.94e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 69.65 E-value: 2.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR-------ATVSGRRYRELA---- 69
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSilylgkeVTFNGPKSSQEAgigi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 --EPLRTVGAVLEASNYHPARSGRNHL-----RVLAAAAglspgrvDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAAL 142
Cdd:PRK10762 84 ihQELNLIPQLTIAENIFLGREFVNRFgridwKKMYAEA-------DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 143 LGEPELLVLDEPANGL-DPEG------IRWLRNflrsfAGRgGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:PRK10762 157 SFESKVIIMDEPTDALtDTETeslfrvIRELKS-----QGR-GIVYI-SHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
18-214 |
3.68e-13 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 67.56 E-value: 3.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-------------EPLRTVGAVLEASNY 84
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNlrwlrsqiglvsqEPVLFDGTIAENIRY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 85 hparsGRN--HLRVLAAAAGLS---------PGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03249 100 -----GKPdaTDEEVEEAAKKAnihdfimslPDGYDTLVGErgSQLSG-----------GQKQRIAIARALLRNPKILLL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMsQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03249 164 DEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTI-RNADLIAVLQNGQVVEQGTHDEL 224
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
12-214 |
5.35e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 68.70 E-value: 5.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 12 RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP-LRTVGAVLEASNYHPARSG 90
Cdd:PRK11160 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAaLRQAISVVSQRVHLFSATL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 91 RNHLRVlaAAAGLSPGRVDEVLAEVELS-------------GAAKRRVGGyslGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:PRK11160 431 RDNLLL--AAPNASDEALIEVLQQVGLEklleddkglnawlGEGGRQLSG---GEQRRLGIARALLHDAPLLLLDEPTEG 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 158 LDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQLaDEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK11160 506 LDAETERQILELLAEHA-QNKTVLMITHRLTGLEQF-DRICVMDNGQIIEQGTHQEL 560
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-214 |
5.94e-13 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 68.21 E-value: 5.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRS----ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALP---TSGRATVSGRRYRELAEP-- 71
Cdd:PRK09473 12 LLDVKDLRVTFSTpdgdVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngrIGGSATFNGREILNLPEKel 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 --LRT--VGAVLE--ASNYHP-ARSGRNHLRVLAAAAGLSPGRVDE----VLAEVELSgAAKRRVGGY----SLGMRQRL 136
Cdd:PRK09473 92 nkLRAeqISMIFQdpMTSLNPyMRVGEQLMEVLMLHKGMSKAEAFEesvrMLDAVKMP-EARKRMKMYphefSGGMRQRV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 137 SVAAALLGEPELLVLDEPANGLD---PEGIRWLRNFL-RSFagrGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVA 212
Cdd:PRK09473 171 MIAMALLCRPKLLIADEPTTALDvtvQAQIMTLLNELkREF---NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247
|
..
gi 1671887361 213 EL 214
Cdd:PRK09473 248 DV 249
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-215 |
6.84e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 68.31 E-value: 6.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALPT--SGRATVSGRRY--RELAEPLRT-VGAVLEASNYHPARS-- 89
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGkfEGNVFINGKPVdiRNPAQAIRAgIAMVPEDRKRHGIVPil 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 90 --GRN-HLRVLAAAAGLspGRVDEVlAEVELSGAAKRR-----------VGGYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:TIGR02633 355 gvGKNiTLSVLKSFCFK--MRIDAA-AELQIIGSAIQRlkvktaspflpIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 156 NGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:TIGR02633 432 RGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALT 491
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-236 |
9.22e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 66.60 E-value: 9.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLAlPTSGRATVSGR----------RYRELAEP 71
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-ELESEVRVEGRveffnqniyeRRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEASNYHPArSGRNHLRVLAAAAGLSP-----GRVDEVLAEVELSGAAKRRVGGYSL----GMRQRLSVAAAL 142
Cdd:PRK14258 87 RRQVSMVHPKPNLFPM-SVYDNVAYGVKIVGWRPkleidDIVESALKDADLWDEIKHKIHKSALdlsgGQQQRLCIARAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 143 LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGA 221
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245
|
250
....*....|....*
gi 1671887361 222 TRVRSPRADELLARL 236
Cdd:PRK14258 246 SPHDSRTREYVLSRL 260
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-214 |
1.06e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 66.61 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR-------YRELAEPLR 73
Cdd:PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVlyfgkdiFQIDAIKLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 T-VGAVLEASNYHPARSGRNHLRVLAAAAGLSPGR-----VDEVLAEVELSGAAKRRVGG----YSLGMRQRLSVAAALL 143
Cdd:PRK14246 90 KeVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKReikkiVEECLRKVGLWKEVYDRLNSpasqLSGGQQQRLTIARALA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 144 GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIV-SHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-214 |
1.07e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 66.55 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 5 ERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA--EPLRTVGaVLEAS 82
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAskEVARRIG-LLAQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 83 NYHP---------ARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDE 153
Cdd:PRK10253 90 ATTPgditvqelvARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 154 PANGLD-PEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK10253 170 PTTWLDiSHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-206 |
1.07e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 67.03 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSAT-----AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSG------------RATVSG-- 62
Cdd:PRK13651 3 IKVKNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiewifkdeknkKKTKEKek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 63 ------------RRYRELAEPLRTVGAVLEASNYHPARSG-RNHLRVLAAAAGLSPGRVDEVLAEV-------------- 115
Cdd:PRK13651 83 vleklviqktrfKKIKKIKEIRRRVGVVFQFAEYQLFEQTiEKDIIFGPVSMGVSKEEAKKRAAKYielvgldesylqrs 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 116 --ELSGAAKRRVggyslgmrqrlSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQL 193
Cdd:PRK13651 163 pfELSGGQKRRV-----------ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
|
250
....*....|...
gi 1671887361 194 ADEVVIIHRGKLV 206
Cdd:PRK13651 232 TKRTIFFKDGKII 244
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-185 |
1.27e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 67.67 E-value: 1.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-------RYRELAEPLRTV 75
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKlevayfdQHRAELDPEKTV 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 76 gavleASNyhparsgrnhlrvlaaaagLSPGRvdevlAEVELSGAaKRRVGGY------------------SLGMRQRLS 137
Cdd:PRK11147 401 -----MDN-------------------LAEGK-----QEVMVNGR-PRHVLGYlqdflfhpkramtpvkalSGGERNRLL 450
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1671887361 138 VAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSH 185
Cdd:PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQ---GTVLLVSH 495
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-195 |
1.43e-12 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 65.61 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFR----SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT-- 74
Cdd:PRK11629 5 LLQCDNLCKRYQegsvQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAel 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 ----VGAVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:PRK11629 85 rnqkLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAeinsRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 147 ELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVF-VSSHVLgemsQLAD 195
Cdd:PRK11629 165 RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFlVVTHDL----QLAK 210
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
24-200 |
1.60e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 67.53 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 24 VPK-GRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG------RRYR--ELAEPLR--------------------- 73
Cdd:PRK13409 95 IPKeGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPswdevlKRFRgtELQNYFKklyngeikvvhkpqyvdlipk 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 ----TVGAVLEASNYHparsgrnhlrvlaaaaglspGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELL 149
Cdd:PRK13409 175 vfkgKVRELLKKVDER--------------------GKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 150 VLDEPANGLD-PEGIRWLRnFLRSFAgRGGTVFVSSHVLGEMSQLADEVVII 200
Cdd:PRK13409 235 FFDEPTSYLDiRQRLNVAR-LIRELA-EGKYVLVVEHDLAVLDYLADNVHIA 284
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
15-182 |
1.96e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 65.36 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 15 TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLAL--PTSGRATVsgrryreLAEPLRTVGAVLEasnyhparsgrn 92
Cdd:COG2401 44 YVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDV-------PDNQFGREASLID------------ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 hlrvlAAAAGLSPGRVDEVLAEVELSGAA--KRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFL 170
Cdd:COG2401 105 -----AIGRKGDFKDAVELLNAVGLSDAVlwLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARNL 179
|
170
....*....|..
gi 1671887361 171 RSFAGRGGTVFV 182
Cdd:COG2401 180 QKLARRAGITLV 191
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-224 |
2.30e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 64.99 E-value: 2.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAvdDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLE 80
Cdd:PRK10771 1 MLKLTDITWLYHHLPM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHParsgrnHLRVLA-AAAGLSPG---------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK10771 79 ENNLFS------HLTVAQnIGLGLNPGlklnaaqreKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 151 LDEPANGLDPEgirwLRNFLRSF-----AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAAGATRV 224
Cdd:PRK10771 153 LDEPFSALDPA----LRQEMLTLvsqvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASAL 227
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
27-214 |
2.99e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 66.61 E-value: 2.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 27 GRITGFLGPNGAGKTTTLRVLLGLALP---TSGRATVSGRRyRELAEPLRTVGAVLEASNYHPARSGRNHLRVLA----- 98
Cdd:TIGR00955 51 GELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMP-IDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAhlrmp 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 --AAAGLSPGRVDEVLAEVELSGAAKRRVG------GYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFL 170
Cdd:TIGR00955 130 rrVTKKEKRERVDEVLQALGLRKCANTRIGvpgrvkGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL 209
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 171 RSFAGRGGTVFVSSHV-LGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR00955 210 KGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-219 |
3.22e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 64.90 E-value: 3.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaeplRTVGAVLE 80
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW----QTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHParSGRNHLRVLAAAAGLSPG-----------RVDEVLAEV-ELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:PRK11614 81 AVAIVP--EGRRVFSRMTVEENLAMGgffaerdqfqeRIKWVYELFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 149 LVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAA 219
Cdd:PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
18-207 |
4.29e-12 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 64.70 E-value: 4.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLAL--PTSGRATVSGRRyrelaeplrtvgaVLEASNYHPARSG----- 90
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGED-------------ILELSPDERARAGiflaf 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 91 -----------RNHLRVLAAAAGLSP-------GRVDEVLAEVELSGA-AKRRV-GGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:COG0396 84 qypveipgvsvSNFLRTALNARRGEElsareflKLLKEKMKELGLDEDfLDRYVnEGFSGGEKKRNEILQMLLLEPKLAI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 151 LDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH---VLGEMSqlADEVVIIHRGKLVA 207
Cdd:COG0396 164 LDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHyqrILDYIK--PDFVHVLVDGRIVK 221
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
10-205 |
4.96e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 64.03 E-value: 4.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 10 RFRSATAV-DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR---RYRElaEPLRTVGAVLEASNYH 85
Cdd:cd03248 22 PTRPDTLVlQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKpisQYEH--KYLHSKVSLVGQEPVL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 86 PARSGRNHLrvlaaAAGLSPGRVDEVLAEVELSGA--------------AKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03248 100 FARSLQDNI-----AYGLQSCSFECVKEAAQKAHAhsfiselasgydteVGEKGSQLSGGQKQRVAIARALIRNPQVLIL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRgGTVFVSSHVLGEMSQlADEVVIIHRGKL 205
Cdd:cd03248 175 DEATSALDAESEQQVQQALYDWPER-RTVLVIAHRLSTVER-ADQILVLDGGRI 226
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
8-204 |
6.81e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 65.67 E-value: 6.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 8 TKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHPA 87
Cdd:PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPH 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 88 RSGRNHL---RVLAAAAGLSPGR----VDEVLAEVELSGAAKRRVG-----GYSLGMRQRLSVAAALLGEPELLVLDEPA 155
Cdd:PLN03211 155 LTVRETLvfcSLLRLPKSLTKQEkilvAESVISELGLTKCENTIIGnsfirGISGGERKRVSIAHEMLINPSLLILDEPT 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1671887361 156 NGLDPEGIRWLRNFLRSFAGRGGTVFVSSHV-LGEMSQLADEVVIIHRGK 204
Cdd:PLN03211 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGR 284
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
19-205 |
7.85e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 65.05 E-value: 7.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHParsgrnHLRVla 98
Cdd:PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP------HLSV-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 aAAGLSPG-------------RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEgirw 165
Cdd:PRK11000 93 -AENMSFGlklagakkeeinqRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA---- 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 166 LRNFLRSFAGR-----GGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK11000 168 LRVQMRIEISRlhkrlGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-206 |
8.14e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 63.79 E-value: 8.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAtvsgrRYRELAEPLRTVGAVLE 80
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV-----HYRMRDGQLRDLYALSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 ASNYHPARS------------------------------GRNHLRVLAAAAGlspgrvdEVLAEVELsgAAKR---RVGG 127
Cdd:PRK11701 81 AERRRLLRTewgfvhqhprdglrmqvsaggnigerlmavGARHYGDIRATAG-------DWLERVEI--DAARiddLPTT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 128 YSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGlAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
18-203 |
8.42e-12 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 62.65 E-value: 8.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLG--LALPTSGRATVSGRRYRElaEPLRTVGAVlEASNYHPARSgrnhlr 95
Cdd:cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEILINGRPLDK--NFQRSTGYV-EQQDVHSPNL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 96 vlaaaaglspgRVDEVLaevELSgaAKRRvgGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAG 175
Cdd:cd03232 95 -----------TVREAL---RFS--ALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
|
170 180 190
....*....|....*....|....*....|..
gi 1671887361 176 RGGTVFVSSH----VLGEMsqlADEVVIIHRG 203
Cdd:cd03232 157 SGQAILCTIHqpsaSIFEK---FDRLLLLKRG 185
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-206 |
1.14e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 62.54 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLA--LPTSGRATVSGRryrelaeplrtvgAVL 79
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPkyEVTEGEILFKGE-------------DIT 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGrnhlrvlaaaAGLS-------PG-RVDEVLAEVELsgaakrrvgGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:cd03217 68 DLPPEERARLG----------IFLAfqyppeiPGvKNADFLRYVNE---------GFSGGEKKRNEILQLLLLEPDLAIL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHvLGEMSQL--ADEVVIIHRGKLV 206
Cdd:cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH-YQRLLDYikPDRVHVLYDGRIV 184
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-160 |
1.29e-11 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 63.52 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGL-----ALPTSGRATVSGR----RYRELAEpL 72
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndlipGARVEGEILLDGEdiydPDVDVVE-L 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RT-VGAVLEASN------YhparsgRNhlrvlaAAAGL------SPGRVDEVlaeVE--LSGAA---------KRRVGGY 128
Cdd:COG1117 91 RRrVGMVFQKPNpfpksiY------DN------VAYGLrlhgikSKSELDEI---VEesLRKAAlwdevkdrlKKSALGL 155
|
170 180 190
....*....|....*....|....*....|..
gi 1671887361 129 SLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:COG1117 156 SGGQQQRLCIARALAVEPEVLLMDEPTSALDP 187
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
15-206 |
1.32e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 64.73 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 15 TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGR-----RYRELAEPLRTVGAVLEASN--YHP- 86
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL-INSQGEIWFDGQplhnlNRRQLLPVRHRIQVVFQDPNssLNPr 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 -------ARSGRNHLRVLAAAAglSPGRVDEVLAEVELSGAAKRRV-GGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:PRK15134 379 lnvlqiiEEGLRVHQPTLSAAQ--REQQVIAVMEEVGLDPETRHRYpAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGGTVFV-SSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK15134 457 DKTVQAQILALLKSLQQKHQLAYLfISHDLHVVRALCHQVIVLRQGEVV 505
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1-206 |
1.51e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 64.43 E-value: 1.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPT---SGRATVSG--RRYR--------- 66
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGV-YPHgsyEGEILFDGevCRFKdirdsealg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 ------ELA-EPLRTVGAVLEASNyHPARSGR-NHLRVLAAAAGLspgrvdevLAEVELSGAAKRRVGGYSLGMRQRLSV 138
Cdd:NF040905 80 iviihqELAlIPYLSIAENIFLGN-ERAKRGViDWNETNRRAREL--------LAKVGLDESPDTLVTDIGVGKQQLVEI 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:NF040905 151 AKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-206 |
1.53e-11 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 62.51 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFR--SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLR----- 73
Cdd:cd03244 3 IEFKNVSLRYRpnLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGlHDLRsrisi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 ----------TVGAVLEASNYHparsgrnhlrvlaaaaglSPGRVDEVLAEVELSGAAKRRVGG-----------YSLGM 132
Cdd:cd03244 83 ipqdpvlfsgTIRSNLDPFGEY------------------SDEELWQALERVGLKEFVESLPGGldtvveeggenLSVGQ 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 133 RQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRS-FAGRggTVFVSSHVLGEMSQlADEVVIIHRGKLV 206
Cdd:cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREaFKDC--TVLTIAHRLDTIID-SDRILVLDKGRVV 216
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
20-185 |
2.10e-11 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 63.98 E-value: 2.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 20 LSFsVPKGRItGFLGPNGAGKTTTLRVLLGLALPTSGRATVS-GRRYRELA-EPL----RTV-GAVLEAsnYHPARSGRN 92
Cdd:PRK11819 28 LSF-FPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEARPApGIKVGYLPqEPQldpeKTVrENVEEG--VAEVKAALD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 HLRVLAAAAGLSPGRVDEVLAE-------------------VELSGAAKR------RVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK11819 104 RFNEIYAAYAEPDADFDALAAEqgelqeiidaadawdldsqLEIAMDALRcppwdaKVTKLSGGERRRVALCRLLLEKPD 183
|
170 180 190
....*....|....*....|....*....|....*...
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSH 185
Cdd:PRK11819 184 MLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTH 218
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
7-215 |
2.70e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.60 E-value: 2.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 7 LTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRR--YRELAEPLRT-VGAVLEASN 83
Cdd:PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEidFKSSKEALENgISMVHQELN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 84 YHPARSGRNHLRVlaaaaGLSPGR---VDE---------VLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVL 151
Cdd:PRK10982 84 LVLQRSVMDNMWL-----GRYPTKgmfVDQdkmyrdtkaIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-235 |
2.77e-11 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 62.39 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 4 VERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRatvsgrryrelaeplrtvgavLEASN 83
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE---------------------LLAGT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 84 yHPARSGRNHLRVLAAAAGLSPGR--VDEV---------------LAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:PRK11247 74 -APLAEAREDTRLMFQDARLLPWKkvIDNVglglkgqwrdaalqaLAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 147 ELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVVIIHRGKLvahqsVAELTVQAAGATRVR 225
Cdd:PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGfTVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDLPRPRRRG 227
|
250
....*....|
gi 1671887361 226 SPRADELLAR 235
Cdd:PRK11247 228 SARLAELEAE 237
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-206 |
3.28e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 63.28 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGL--ALPTSGRATVSGRRYRE---------LAE 70
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHVALCEKcgyverpskVGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 PLRTVGAVLEASN----------------------------YHPARSGRNHLRVLAAA---AGLSPGRVDEVLAEVELSG 119
Cdd:TIGR03269 81 PCPVCGGTLEPEEvdfwnlsdklrrrirkriaimlqrtfalYGDDTVLDNVLEALEEIgyeGKEAVGRAVDLIEMVQLSH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 120 AAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFVSSHVLGEMSQLADEVV 198
Cdd:TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGiSMVLTSHWPEVIEDLSDKAI 240
|
....*...
gi 1671887361 199 IIHRGKLV 206
Cdd:TIGR03269 241 WLENGEIK 248
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
19-204 |
6.70e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 60.56 E-value: 6.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryreLA----EP-LRTvGAVLE----ASNYHPARs 89
Cdd:cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----IAyvsqEPwIQN-GTIREnilfGKPFDEER- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 90 grnHLRVLAAAAgLSPgrvD-EVLAE----------VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:cd03250 97 ---YEKVIKACA-LEP---DlEILPDgdlteigekgINLSG-----------GQKQRISLARAVYSDADIYLLDDPLSAV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1671887361 159 DPEGIRWL-RNFLRSFAGRGGTVFVSSHVLGEMSQlADEVVIIHRGK 204
Cdd:cd03250 159 DAHVGRHIfENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-209 |
7.80e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 60.66 E-value: 7.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA-TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAEPLRT 74
Cdd:PRK10908 1 MIRFEHVSKAYLGGrQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHditrlKNREVPFLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 VGAVLEASNYHPARSGRNHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDdirrRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 151 LDEPANGLD---PEGIrwLRNFlRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQ 209
Cdd:PRK10908 161 ADEPTGNLDdalSEGI--LRLF-EEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGV 219
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-185 |
1.22e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 62.24 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA--TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYRE--LAEPLRTVGA 77
Cdd:TIGR01271 1218 MDVQGLTAKYTEAgrAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWNSvtLQTWRKAFGV 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEA---------SNYHP-ARSGRNHLRVLAAAAGLS------PGRVDEVLAEvelsgaakrrvGGYSL--GMRQRLSVA 139
Cdd:TIGR01271 1297 IPQKvfifsgtfrKNLDPyEQWSDEEIWKVAEEVGLKsvieqfPDKLDFVLVD-----------GGYVLsnGHKQLMCLA 1365
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLR-SFAgrGGTVFVSSH 185
Cdd:TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKqSFS--NCTVILSEH 1410
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-215 |
1.60e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 61.22 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAePLRT--VGAV 78
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAhqLGIY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEASNYH--PARSGRNHLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPAN 156
Cdd:PRK15439 90 LVPQEPLlfPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 157 GLDPEGIRWLRNFLRSFAGRG-GTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:PRK15439 170 SLTPAETERLFSRIRELLAQGvGIVFI-SHKLPEIRQLADRISVMRDGTIALSGKTADLS 228
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
16-217 |
2.43e-10 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 60.80 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE--LAEpLRTVGAVLE----------ASN 83
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDytLAS-LRNQVALVSqnvhlfndtiANN 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 84 YHPARSGRNHLRVLAAAAGLS---------PGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLD 152
Cdd:PRK11176 437 IAYARTEQYSREQIEEAARMAyamdfinkmDNGLDTVIGEngVLLSG-----------GQRQRIAIARALLRDSPILILD 505
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFAgRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:PRK11176 506 EATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELLAQ 568
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
5-204 |
2.96e-10 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 60.02 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 5 ERLT-KRFRSataVDDLSFSVPKGrITGFLGPNGAGKTTTLRVLlGLALPTSGRATVS---------------------- 61
Cdd:COG3593 4 EKIKiKNFRS---IKDLSIELSDD-LTVLVGENNSGKSSILEAL-RLLLGPSSSRKFDeedfylgddpdlpeieieltfg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 62 ------------GRRYRELAEPLRTVGAVLEA---------SNYHPARSGRNHLRVlaaaaGLSPGRVDEVL--AEVELS 118
Cdd:COG3593 79 sllsrllrlllkEEDKEELEEALEELNEELKEalkalnellSEYLKELLDGLDLEL-----ELSLDELEDLLksLSLRIE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 119 GAAKRRVGGYSLGMRQRLSVAAALL-------GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH---VLG 188
Cdd:COG3593 154 DGKELPLDRLGSGFQRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVIITTHsphLLS 233
|
250
....*....|....*.
gi 1671887361 189 EMSqlADEVVIIHRGK 204
Cdd:COG3593 234 EVP--LENIRRLRRDS 247
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-210 |
3.61e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 58.58 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRS--ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaePLRTVgavl 79
Cdd:cd03369 7 IEVENLSVRYAPdlPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI--PLEDL---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 easnyhparsgRNHLRVLAAAAGLSPGRVDEVL------AEVELSGAAKRRVGGYSL--GMRQRLSVAAALLGEPELLVL 151
Cdd:cd03369 81 -----------RSSLTIIPQDPTLFSGTIRSNLdpfdeySDEEIYGALRVSEGGLNLsqGQRQLLCLARALLKRPRVLVL 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 152 DEPANGLDPEGIRWLRNFLR-SFAgrGGTVFVSSHVLGEMSQLaDEVVIIHRGKLVAHQS 210
Cdd:cd03369 150 DEATASIDYATDALIQKTIReEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVKEYDH 206
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
16-205 |
4.06e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 59.06 E-value: 4.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRryrelaeplrtVGAVLEASNYHPARSGRNHLR 95
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------VSVIAISAGLSGQLTGIENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 96 VLAAAAGLSPGRVDEVLAEV----ELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:PRK13546 108 FKMLCMGFKRKEIKAMTPKIiefsELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187
|
170 180 190
....*....|....*....|....*....|....
gi 1671887361 172 SFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK13546 188 EFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
14-214 |
4.41e-10 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 60.14 E-value: 4.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 14 ATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYREL-------------AEPLRTVGAVLE 80
Cdd:TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIdrhtlrqfinylpQEPYIFSGSILE 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 81 asnyhparsgrNHLrvLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGY-----------SLGMRQRLSVAAALLGEPELL 149
Cdd:TIGR01193 567 -----------NLL--LGAKENVSQDEIWAACEIAEIKDDIENMPLGYqtelseegssiSGGQKQRIALARALLTDSKVL 633
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 150 VLDEPANGLDPEGIRWLRNFLRSFAGRggTVFVSSHVLgEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNLQDK--TIIFVAHRL-SVAKQSDKIIVLDHGKIIEQGSHDEL 695
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-185 |
7.92e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 57.27 E-value: 7.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRY-RELAEPLRTVGAVL 79
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIkKDLCTYQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 80 EASNYHPARSGR-NHLRVLAAAAGLSpgRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:PRK13540 81 HRSGINPYLTLReNCLYDIHFSPGAV--GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180
....*....|....*....|....*..
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
16-206 |
1.00e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 58.56 E-value: 1.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR--------RYRE-------------------- 67
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKdllgmkddEWRAvrsdiqmifqdplaslnprm 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 68 -----LAEPLRTvgavleasnYHPARSG---RNHLRVLAAAAGLSPGRVDEVLAEvelsgaakrrvggYSLGMRQRLSVA 139
Cdd:PRK15079 116 tigeiIAEPLRT---------YHPKLSRqevKDRVKAMMLKVGLLPNLINRYPHE-------------FSGGQCQRIGIA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG--TVFVsSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK15079 174 RALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGlsLIFI-AHDLAVVKHISDRVLVMYLGHAV 241
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
26-199 |
1.18e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 57.42 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 26 KGRITGFLGPNGAGKTTTLRVLLGLALPTSGRatvsgrryrelaeplrtVGAVLEASNYHPAR-------SGRNHLRVLA 98
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD-----------------IEIELDTVSYKPQYikadyegTVRDLLSSIT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFA-GRG 177
Cdd:cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAeNNE 166
|
170 180
....*....|....*....|..
gi 1671887361 178 GTVFVSSHVLGEMSQLADEVVI 199
Cdd:cd03237 167 KTAFVVEHDIIMIDYLADRLIV 188
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
16-214 |
1.24e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 58.05 E-value: 1.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSG-------------RATVSGRR----------YRELaEPL 72
Cdd:PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGelyyqgqdllkadPEAQKLLRqkiqivfqnpYGSL-NPR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 73 RTVGAVLEASnyhparsgrnhlrvLAAAAGLSPG----RVDEVLAEVEL-SGAAKRRVGGYSLGMRQRLSVAAALLGEPE 147
Cdd:PRK11308 109 KKVGQILEEP--------------LLINTSLSAAerreKALAMMAKVGLrPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 148 LLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT--VFVsSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK11308 175 VVVADEPVSALDVSVQAQVLNLMMDLQQELGLsyVFI-SHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
18-229 |
1.50e-09 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 58.58 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAE----PLRTVGAVLEASNYH--PARSGR 91
Cdd:PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAdalaQLRREHFGFIFQRYHllSHLTAA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 92 NHLRVLAAAAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLR 167
Cdd:PRK10535 105 QNVEVPAVYAGLERKqrllRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVM 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1671887361 168 NFLRSFAGRGGTVFVSSHVlGEMSQLADEVVIIHRGKLVAhQSVAELTVQAAGATRVRSPRA 229
Cdd:PRK10535 185 AILHQLRDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVR-NPPAQEKVNVAGGTEPVVNTA 244
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-214 |
1.66e-09 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 57.56 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSA--TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPTSGRATVSGRRYRE--LAEPLRTVGA 77
Cdd:cd03289 3 MTVKDLTAKYTEGgnAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIDGVSWNSvpLQKWRKAFGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEA---------SNYHP--ARSGRNHLRVlAAAAGLS------PGRVDEVLAEvelsgaakrrvGGYSL--GMRQRLSV 138
Cdd:cd03289 82 IPQKvfifsgtfrKNLDPygKWSDEEIWKV-AEEVGLKsvieqfPGQLDFVLVD-----------GGCVLshGHKQLMCL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLR-SFAgrGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03289 150 ARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKqAFA--DCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKL 223
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
1-185 |
1.68e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 58.28 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFrsatavDDLSFSVP-----KGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGR-----RYRELAE 70
Cdd:PRK13409 340 LVEYPDLTKKL------GDFSLEVEggeiyEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKisykpQYIKPDY 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 PLrTVGAVLEAsnyHPARSGRNHLRVLAAaaglSPGRVDEVLaevelsgaaKRRVGGYSLGMRQRLSVAAALLGEPELLV 150
Cdd:PRK13409 414 DG-TVEDLLRS---ITDDLGSSYYKSEII----KPLQLERLL---------DKNVKDLSGGELQRVAIAACLSRDADLYL 476
|
170 180 190
....*....|....*....|....*....|....*....
gi 1671887361 151 LDEPANGLDPE----GIRWLRNFLRsfaGRGGTVFVSSH 185
Cdd:PRK13409 477 LDEPSAHLDVEqrlaVAKAIRRIAE---EREATALVVDH 512
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-214 |
1.73e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 57.10 E-value: 1.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 4 VERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPL--RTVGAVLEA 81
Cdd:PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAfaRKVAYLPQQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 SnyhPARSGRNhLRVLAAAaGLSP-----GR--------VDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPEL 148
Cdd:PRK10575 94 L---PAAEGMT-VRELVAI-GRYPwhgalGRfgaadrekVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 149 LVLDEPANGLD-PEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK10575 169 LLLDEPTSALDiAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
16-206 |
2.46e-09 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 57.74 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP------LRTVGAVLEASNYHPARS 89
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelrevrRKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 90 GRNHLRVLAAAAGLSPGRVDE----VLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRW 165
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREkaldALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1671887361 166 LRNFLRSF-AGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK10070 203 MQDELVKLqAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-205 |
3.51e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 57.10 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 3 EVERLTKRFRSAtaVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYrELAEPLRTV----GAV 78
Cdd:PRK09700 267 EVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI-SPRSPLDAVkkgmAYI 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 79 LEA---SNYHPARSGRNHLRV--------LAAAAGLSPGRVDEVLAEVE---LS---GAAKRRVGGYSLGMRQRLSVAAA 141
Cdd:PRK09700 344 TESrrdNGFFPNFSIAQNMAIsrslkdggYKGAMGLFHEVDEQRTAENQrelLAlkcHSVNQNITELSGGNQQKVLISKW 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK09700 424 LCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
17-215 |
7.87e-09 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 56.09 E-value: 7.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALP-----------------------TSGRATVSGRRYRELAEPLR 73
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPgrwegeifidgkpvkirnpqqaiAQGIAMVPEDRKRDGIVPVM 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 TVG-----AVL----------EASNYHPARSGRNHLRVLAAAAGLSPGRvdevlaeveLSGaakrrvggyslGMRQRLSV 138
Cdd:PRK13549 357 GVGknitlAALdrftggsridDAAELKTILESIQRLKVKTASPELAIAR---------LSG-----------GNQQKAVL 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELT 215
Cdd:PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-205 |
9.11e-09 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 55.83 E-value: 9.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLT-KRFRsatavdDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRE------------- 67
Cdd:PRK15439 269 LTVEDLTgEGFR------NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAlstaqrlarglvy 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 68 LAEPLRTVGAVLEASNYHPARSGRNHLRVLAaaagLSPGRVDEVLAE------VELSGAaKRRVGGYSLGMRQRLSVAAA 141
Cdd:PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFW----IKPARENAVLERyrralnIKFNHA-EQAARTLSGGNQQKVLIAKC 417
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
24-201 |
9.54e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 55.07 E-value: 9.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 24 VPK-GRITGFLGPNGAGKTTTLRVLLGLALPTSGRATvSGRRYRELAEPLRtvGAVLEasNY---------HPARSGRNH 93
Cdd:cd03236 22 VPReGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD-DPPDWDEILDEFR--GSELQ--NYftkllegdvKVIVKPQYV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 94 LRVLAAAAG-----LSP----GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDpegIR 164
Cdd:cd03236 97 DLIPKAVKGkvgelLKKkderGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD---IK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1671887361 165 WLRN---FLRSFAGRGGTVFVSSHVLGEMSQLADevvIIH 201
Cdd:cd03236 174 QRLNaarLIRELAEDDNYVLVVEHDLAVLDYLSD---YIH 210
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-206 |
1.11e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 55.67 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGraTVsgrRYRELAEplrtVGavlea 81
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG--TV---KWSENAN----IG----- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 82 snYHPARSGR---NHLRVLAAAAGLSPGRVDE-----VLAEVELSG-AAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:PRK15064 386 --YYAQDHAYdfeNDLTLFDWMSQWRQEGDDEqavrgTLGRLLFSQdDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEVVIIHRGKLV 206
Cdd:PRK15064 464 EPTNHMDMESIESLNMALEKYE---GTLIFVSHDREFVSSLATRIIEITPDGVV 514
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-215 |
1.16e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 55.78 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLtkrfrSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALP-TSGRATVSGRR---------------Y 65
Cdd:PRK10762 258 LKVDNL-----SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG-ALPrTSGYVTLDGHEvvtrspqdglangivY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 66 reLAEPLRTVGAVLEAS---NYHPARsgrnhLRVLAAAAGlSPGRVDEVLAEVELSGA-------AKRRVGGYSLGMRQR 135
Cdd:PRK10762 332 --ISEDRKRDGLVLGMSvkeNMSLTA-----LRYFSRAGG-SLKHADEQQAVSDFIRLfniktpsMEQAIGLLSGGNQQK 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRG-GTVFVSS---HVLGeMSqlaDEVVIIHRGKLVAHQSV 211
Cdd:PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGlSIILVSSempEVLG-MS---DRILVMHEGRISGEFTR 479
|
....
gi 1671887361 212 AELT 215
Cdd:PRK10762 480 EQAT 483
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
21-185 |
1.21e-08 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 54.97 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 21 SFSVPKGRITGFLGPNGAGKTTTLRVLLGLA------LPtSGRATVSgRRYRELAEPLRTVG----------AVLEASNY 84
Cdd:COG4938 14 EAELELKPLTLLIGPNGSGKSTLIQALLLLLqsnfiyLP-AERSGPA-RLYPSLVRELSDLGsrgeytadflAELENLEI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 85 HPARSGRNHLRVLAAAAGLSPGRV------DEVLAEVELSGAAKR-RVGGYSLGMRQRLSVAAALL---GEPELLVLDEP 154
Cdd:COG4938 92 LDDKSKELLEQVEEWLEKIFPGKVevdassDLVRLVFRPSGNGKRiPLSNVGSGVSELLPILLALLsaaKPGSLLIIEEP 171
|
170 180 190
....*....|....*....|....*....|.
gi 1671887361 155 ANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:COG4938 172 EAHLHPKAQSALAELLAELANSGVQVIIETH 202
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
129-185 |
1.37e-08 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 55.09 E-value: 1.37e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 129 SLGMRQRLSVAAALL---GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:pfam13304 238 SDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTH 297
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-160 |
1.64e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 54.40 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVL-----LGLALPTSGRATVSGR----RYRELAEP 71
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndLNPEVTITGSIVYNGHniysPRTDTVDL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 LRTVGAVLEASNYHPARSGRNHLRVLAAAAGLSPGRVDEVLaEVELSGAA-----KRRVG----GYSLGMRQRLSVAAAL 142
Cdd:PRK14239 85 RKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV-EKSLKGASiwdevKDRLHdsalGLSGGQQQRVCIARVL 163
|
170
....*....|....*...
gi 1671887361 143 LGEPELLVLDEPANGLDP 160
Cdd:PRK14239 164 ATSPKIILLDEPTSALDP 181
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
27-185 |
1.71e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 55.50 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 27 GRITGFLGPNGAGKTTTLRVLLG---LALPTSGRATVSGRRYRELAEplRTVGAVLEASNYHPARSGRNHLRVLAA---A 100
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLAErvtTGVITGGDRLVNGRPLDSSFQ--RSIGYVQQQDLHLPTSTVRESLRFSAYlrqP 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 101 AGLSPGR----VDEVLAEVELSGAAKRRVG----GYSLGMRQRLSVAAALLGEPELLV-LDEPANGLDPEGIRWLRNFLR 171
Cdd:TIGR00956 867 KSVSKSEkmeyVEEVIKLLEMESYADAVVGvpgeGLNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMR 946
|
170
....*....|....
gi 1671887361 172 SFAGRGGTVFVSSH 185
Cdd:TIGR00956 947 KLADHGQAILCTIH 960
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-257 |
1.97e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 55.10 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLaLPT------SGRATVSGRRYRELAE 70
Cdd:PRK15134 5 LLAIENLSVAFRQQqtvrTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL-LPSppvvypSGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 P-LRTVGAVLEASNYHPARSGRNHL--------RVLAAAAGLS--PGRvDEVLAEVELSG--AAKRRVGGY----SLGMR 133
Cdd:PRK15134 84 QtLRGVRGNKIAMIFQEPMVSLNPLhtlekqlyEVLSLHRGMRreAAR-GEILNCLDRVGirQAAKRLTDYphqlSGGER 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 134 QRLSVAAALLGEPELLVLDEPANGLD---PEGIRWLRNFLRSFAGRgGTVFVsSHVLGEMSQLADEVVIIHRGKLVAHQS 210
Cdd:PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDvsvQAQILQLLRELQQELNM-GLLFI-THNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1671887361 211 VAELTVQAAgatrvrSPRADELLarlraggiDAEPT-EAGALAVHAPP 257
Cdd:PRK15134 241 AATLFSAPT------HPYTQKLL--------NSEPSgDPVPLPEPASP 274
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
16-214 |
2.03e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 54.40 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG------RRYRELAEPLRTVGAVLEASN------ 83
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDitithkTKDKYIRPVRKRIGMVFQFPEsqlfed 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 84 -------YHPARSGRNHLRVLAAAAGL--SPGRVDEVLAE--VELSGAAKRRVggyslgmrqrlSVAAALLGEPELLVLD 152
Cdd:PRK13646 102 tvereiiFGPKNFKMNLDEVKNYAHRLlmDLGFSRDVMSQspFQMSGGQMRKI-----------AIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1671887361 153 EPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-204 |
2.24e-08 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 54.04 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGrryrelaEPLRTVGA--- 77
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGG-------EEIRLKPDrdg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEASNYHPARSGR-------------NHLRVL---------------AAAAGlspgRVDEVLAEVELSGAAKRRVGGYS 129
Cdd:COG4598 81 ELVPADRRQLQRIRtrlgmvfqsfnlwSHMTVLenvieapvhvlgrpkAEAIE----RAEALLAKVGLADKRDAYPAHLS 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 130 LGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHvlgEMS---QLADEVVIIHRGK 204
Cdd:COG4598 157 GGQQQRAAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTH---EMGfarDVSSHVVFLHQGR 231
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
9-206 |
2.78e-08 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 53.04 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 9 KRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLlglALPTSGRATVSGR-RYRELAeplrtvgaVLEASNYHPA 87
Cdd:cd03233 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL---ANRTEGNVSVEGDiHYNGIP--------YKEFAEKYPG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 88 RS-----GRNHLRVLAaaaglspgrVDEVLaEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPE- 161
Cdd:cd03233 84 EIiyvseEDVHFPTLT---------VRETL-DFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSt 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1671887361 162 GIRWLrNFLRSFAGR-GGTVFVS-SHVLGEMSQLADEVVIIHRGKLV 206
Cdd:cd03233 154 ALEIL-KCIRTMADVlKTTTFVSlYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-215 |
2.81e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.79 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG------------------ 62
Cdd:PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnqetpalpqpa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 63 --------RRYRELAEPLRTVGavlEASNYHparsgrnhlrvlaaAAGLSPGRVDEVLAEVELSGAA------------- 121
Cdd:PRK10636 81 leyvidgdREYRQLEAQLHDAN---ERNDGH--------------AIATIHGKLDAIDAWTIRSRAAsllhglgfsneql 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 122 KRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEvvIIH 201
Cdd:PRK10636 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ---GTLILISHDRDFLDPIVDK--IIH 218
|
250
....*....|....
gi 1671887361 202 rgklVAHQSVAELT 215
Cdd:PRK10636 219 ----IEQQSLFEYT 228
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
122-209 |
4.90e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 54.10 E-value: 4.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 122 KRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgrgGTVFVSSHVLGEMSQLADEVVIIH 201
Cdd:PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP---KTFIVVSHAREFLNTVVTDILHLH 415
|
....*...
gi 1671887361 202 RGKLVAHQ 209
Cdd:PLN03073 416 GQKLVTYK 423
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-218 |
7.36e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 53.18 E-value: 7.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 13 SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLRTVGAVLEASNYhparsgr 91
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQlDSWRSRLAVVSQTPF------- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 92 nhLRVLAAAAGLSPGRVDEVLAEVElsGAAK---------RRVGGY-----------SLGMRQRLSVAAALLGEPELLVL 151
Cdd:PRK10789 400 --LFSDTVANNIALGRPDATQQEIE--HVARlasvhddilRLPQGYdtevgergvmlSGGQKQRISIARALLLNAEILIL 475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1671887361 152 DEPANGLDPEGIRWLRNFLRSFaGRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAELTVQA 218
Cdd:PRK10789 476 DDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
2-185 |
2.11e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 51.71 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFrsatavDDLSFSVPKGRI-----TGFLGPNGAGKTTTLRVLLGLALPTSGratvsgrryrELAEPLR--- 73
Cdd:COG1245 342 VEYPDLTKSY------GGFSLEVEGGEIregevLGIVGPNGIGKTTFAKILAGVLKPDEG----------EVDEDLKisy 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 74 -----------TVGAVLEASNYHPARSG--RNHLrvlaaaagLSPGRVDEVL-AEV-ELSGaakrrvggyslGMRQRLSV 138
Cdd:COG1245 406 kpqyispdydgTVEEFLRSANTDDFGSSyyKTEI--------IKPLGLEKLLdKNVkDLSG-----------GELQRVAI 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1671887361 139 AAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFA-GRGGTVFVSSH 185
Cdd:COG1245 467 AACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAeNRGKTAMVVDH 514
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-217 |
2.68e-07 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 51.64 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATAV-DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEP-LRTVGA-- 77
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVlQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSvLRQGVAmv 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 -----VLEASNYHPARSGRNhlrvlaaaagLSPGRVDEVLAEVELSGAAKRRVGG-----------YSLGMRQRLSVAAA 141
Cdd:PRK10790 421 qqdpvVLADTFLANVTLGRD----------ISEEQVWQALETVQLAELARSLPDGlytplgeqgnnLSVGQKQLLALARV 490
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 142 LLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRgGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAELTVQ 217
Cdd:PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQGTHQQLLAA 564
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
27-203 |
3.17e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 51.77 E-value: 3.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 27 GRITGFLGPNGAGKTTTLRVLLGLALP--TSGRATVSGrrYRELAEPLRTVGAVLEASNYH-PARSGRNHL---RVLAAA 100
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGgyIEGDIRISG--FPKKQETFARISGYCEQNDIHsPQVTVRESLiysAFLRLP 983
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 101 AGLSPGR----VDEVLAEVELSGAAKRRVG-----GYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:PLN03140 984 KEVSKEEkmmfVDEVMELVELDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063
|
170 180 190
....*....|....*....|....*....|...
gi 1671887361 172 SFAGRGGTVFVSSHVLG-EMSQLADEVVIIHRG 203
Cdd:PLN03140 1064 NTVDTGRTVVCTIHQPSiDIFEAFDELLLMKRG 1096
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-214 |
3.89e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.01 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF----RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSG----RRYRELAE-- 70
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmllrRRSRQVIEls 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 ---------------------------PLRTVG-AVLEASNYHPARSGRNHLRvlAAAAGLSPGRVDEvlAEVELSgaak 122
Cdd:PRK10261 92 eqsaaqmrhvrgadmamifqepmtslnPVFTVGeQIAESIRLHQGASREEAMV--EAKRMLDQVRIPE--AQTILS---- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 123 RRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLD---PEGIRWLRNFLRSFAGRGgtVFVSSHVLGEMSQLADEVVI 199
Cdd:PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDvtiQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLV 241
|
250
....*....|....*
gi 1671887361 200 IHRGKLVAHQSVAEL 214
Cdd:PRK10261 242 MYQGEAVETGSVEQI 256
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-185 |
6.41e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 48.30 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 2 IEVERLTKRFRSATA-VDDLSFSVPKGR---ITGflgPNGAGKTTTLRVLLGLAlpTSGRATVSgrryrelaeplrtvga 77
Cdd:cd03223 1 IELENLSLATPDGRVlLKDLSFEIKPGDrllITG---PSGTGKSSLFRALAGLW--PWGSGRIG---------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 vleasnyhpaRSGRNHLRVLAAAAGLSPGRVDEVLA---EVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEP 154
Cdd:cd03223 60 ----------MPEGEDLLFLPQRPYLPLGTLREQLIypwDDVLSG-----------GEQQRLAFARLLLHKPKFVFLDEA 118
|
170 180 190
....*....|....*....|....*....|.
gi 1671887361 155 ANGLDPEGIRWLRNFLRsfaGRGGTVFVSSH 185
Cdd:cd03223 119 TSALDEESEDRLYQLLK---ELGITVISVGH 146
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
17-229 |
6.54e-07 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 50.19 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGR---ITGflgPNGAGKTTTLRVLLGLALPTSGRATV-SGRRYRELAE----PLRTVGAVLeasnYHPAr 88
Cdd:COG4178 379 LEDLSLSLKPGErllITG---PSGSGKSTLLRAIAGLWPYGSGRIARpAGARVLFLPQrpylPLGTLREAL----LYPA- 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 89 sgrnhlrvlaAAAGLSPGRVDEVLAEVELSGAAKR--------RVggYSLGMRQRLSVAAALLGEPELLVLDEPANGLDP 160
Cdd:COG4178 451 ----------TAEAFSDAELREALEAVGLGHLAERldeeadwdQV--LSLGEQQRLAFARLLLHKPDWLFLDEATSALDE 518
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 161 EGIRWLRNFLRSFagRGGTVFVSshvlgemsqladevvIIHRGKLVA-HQSVAELTVQAAGATRVRSPRA 229
Cdd:COG4178 519 ENEAALYQLLREE--LPGTTVIS---------------VGHRSTLAAfHDRVLELTGDGSWQLLPAEAPA 571
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-206 |
1.02e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 49.85 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF-----------RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA 69
Cdd:PRK10261 313 ILQVRNLVTRFplrsgllnrvtREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 70 ----------------------EPLRTVG-AVLEASNYHPARSGRnhlrvlAAAAglspgRVDEVLAEVELSGA-AKRRV 125
Cdd:PRK10261 393 pgklqalrrdiqfifqdpyaslDPRQTVGdSIMEPLRVHGLLPGK------AAAA-----RVAWLLERVGLLPEhAWRYP 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 126 GGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFV-SSHVLGEMSQLADEVVIIHRGK 204
Cdd:PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLfISHDMAVVERISHRVAVMYLGQ 541
|
..
gi 1671887361 205 LV 206
Cdd:PRK10261 542 IV 543
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
19-207 |
1.15e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 47.70 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTtlrvllglaLPTSGRATVSGRRYRELaeplrtvgavLEASNYHPARSGRNHLRVLA 98
Cdd:cd03238 13 NLDVSIPLNVLVVVTGVSGSGKST---------LVNEGLYASGKARLISF----------LPKFSRNKLIFIDQLQFLID 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAAG-LSPGRVDEVLaevelsgaakrrvggySLGMRQRLSVAAALLGEPE--LLVLDEPANGLDPEGIRWLRNFLRSFAG 175
Cdd:cd03238 74 VGLGyLTLGQKLSTL----------------SGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLID 137
|
170 180 190
....*....|....*....|....*....|....*...
gi 1671887361 176 RGGTVFVSSHVLgEMSQLADEVVII------HRGKLVA 207
Cdd:cd03238 138 LGNTVILIEHNL-DVLSSADWIIDFgpgsgkSGGKVVF 174
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
17-185 |
1.71e-06 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 48.98 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 17 VDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATV--SGRRYRELAEPLRTVGAVLEASNYhPARSGRNHL 94
Cdd:TIGR00954 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKpaKGKLFYVPQRPYMTLGTLRDQIIY-PDSSEDMKR 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 95 RvlaaaaGLSPGRVDEVLAEVELSGAAKRRVGG---------YSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRW 165
Cdd:TIGR00954 547 R------GLSDKDLEQILDNVQLTHILEREGGWsavqdwmdvLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620
|
170 180
....*....|....*....|
gi 1671887361 166 LRNFLRSFagrGGTVFVSSH 185
Cdd:TIGR00954 621 MYRLCREF---GITLFSVSH 637
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
31-185 |
2.63e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 48.35 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 31 GFLGPNGAGKTTTLRVLLGLALPTSGraTVS---GRRYRELA------EPLRTVGAVLEAsnyHP----ARSGRNHLRVL 97
Cdd:PRK15064 31 GLIGANGCGKSTFMKILGGDLEPSAG--NVSldpNERLGKLRqdqfafEEFTVLDTVIMG---HTelweVKQERDRIYAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 98 AAAAGLSPGRVDEVLAEV-ELSG-AAKRRVGGYSLG-----------MRQ-------RLSVAAALLGEPELLVLDEPANG 157
Cdd:PRK15064 106 PEMSEEDGMKVADLEVKFaEMDGyTAEARAGELLLGvgipeeqhyglMSEvapgwklRVLLAQALFSNPDILLLDEPTNN 185
|
170 180
....*....|....*....|....*...
gi 1671887361 158 LDPEGIRWLRNFLRSfagRGGTVFVSSH 185
Cdd:PRK15064 186 LDINTIRWLEDVLNE---RNSTMIIISH 210
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
18-185 |
3.28e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 48.09 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 18 DDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALPT--SGRATVSGRRyRELAEPL----RTVGAVleaSN-----YHP 86
Cdd:PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQgySNDLTLFGRR-RGSGETIwdikKHIGYV---SSslhldYRV 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 ARSGRN------------------HLRVLAaaaglspgrvDEVLAEVELSGA-AKRRVGGYSLGmRQRLS-VAAALLGEP 146
Cdd:PRK10938 352 STSVRNvilsgffdsigiyqavsdRQQKLA----------QQWLDILGIDKRtADAPFHSLSWG-QQRLAlIVRALVKHP 420
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1671887361 147 ELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT--VFVSSH 185
Cdd:PRK10938 421 TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETqlLFVSHH 461
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
9-200 |
4.39e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 9 KRFRSATAVDDLSFsvPKGRITGFLGPNGAGKTTTLRVLlGLALptsGRATVSGRRYRELAEPLrTVGAVleasnyhpar 88
Cdd:cd03227 5 GRFPSYFVPNDVTF--GEGSLTIITGPNGSGKSTILDAI-GLAL---GGAQSATRRRSGVKAGC-IVAAV---------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 89 sgrnhlrvlaaaaglspgRVDEVLAEVELSGaakrrvggyslGMRQRLSVAAAL----LGEPELLVLDEPANGLDPEGIR 164
Cdd:cd03227 68 ------------------SAELIFTRLQLSG-----------GEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQ 118
|
170 180 190
....*....|....*....|....*....|....*.
gi 1671887361 165 WLRNFLRSFAGRGGTVFVSSHVLgEMSQLADEVVII 200
Cdd:cd03227 119 ALAEAILEHLVKGAQVIVITHLP-ELAELADKLIHI 153
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
24-205 |
4.58e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 47.86 E-value: 4.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 24 VPKGRItGFLGPNGAGKTTTLRVLLGLALPTSGRATVS-----GRRYRELAEPLRTVGAVLEASNYHPARSGRNHLRVLA 98
Cdd:PRK10636 336 VPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkgiklGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYL 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAAGLSPGRVDEVLAEvelsgaakrrvggYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAgrgG 178
Cdd:PRK10636 415 GGFGFQGDKVTEETRR-------------FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE---G 478
|
170 180
....*....|....*....|....*..
gi 1671887361 179 TVFVSSHVLGEMSQLADEVVIIHRGKL 205
Cdd:PRK10636 479 ALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1-214 |
7.46e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 47.28 E-value: 7.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA--TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPLRTVGA 77
Cdd:PLN03232 1234 SIKFEDVHLRYRPGlpPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGlTDLRRVLS 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 78 VLEAS----------NYHPArSGRNHLRVLAAaagLSPGRVDEVLAEVELSGAAKRRVGG--YSLGMRQRLSVAAALLGE 145
Cdd:PLN03232 1314 IIPQSpvlfsgtvrfNIDPF-SEHNDADLWEA---LERAHIKDVIDRNPFGLDAEVSEGGenFSVGQRQLLSLARALLRR 1389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1671887361 146 PELLVLDEPANGLDPEGIRWLRNFLRSfAGRGGTVFVSSHVLGEMSQlADEVVIIHRGKLVAHQSVAEL 214
Cdd:PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-214 |
9.94e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 45.97 E-value: 9.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALPTS---------GRATVSGRRYRELAEP 71
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGgaprgarvtGDVTLNGEPLAAIDAP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 72 -LRTVGAVL-EASNYHPARSGRN--------HLRVLAAAAGLSPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAA 141
Cdd:PRK13547 80 rLARLRAVLpQAAQPAFAFSAREivllgrypHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 142 L---------LGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGT-VFVSSHVLGEMSQLADEVVIIHRGKLVAHQSV 211
Cdd:PRK13547 160 LaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLgVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
...
gi 1671887361 212 AEL 214
Cdd:PRK13547 240 ADV 242
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
6-206 |
1.58e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 46.26 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 6 RLTKRFRSATAVD---DLSFSVPKGRITGFLGPNGAGKTTTLRVLL----GLALPTSGRATVSG-------RRYR----- 66
Cdd:TIGR00956 63 RKLKKFRDTKTFDilkPMDGLIKPGELTVVLGRPGSGCSTLLKTIAsntdGFHIGVEGVITYDGitpeeikKHYRgdvvy 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 67 ----ELAEPLRTVGAVLE--ASNYHPARSG--------RNHLRVLAAAA-GLSPGRVDEVLAEVelsgaakrrVGGYSLG 131
Cdd:TIGR00956 143 naetDVHFPHLTVGETLDfaARCKTPQNRPdgvsreeyAKHIADVYMATyGLSHTRNTKVGNDF---------VRGVSGG 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 132 MRQRLSVAAALLGEPELLVLDEPANGLDP----EGIRWLR---NFLRSfagrggTVFVSshvLGEMSQ----LADEVVII 200
Cdd:TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSatalEFIRALKtsaNILDT------TPLVA---IYQCSQdayeLFDKVIVL 284
|
....*.
gi 1671887361 201 HRGKLV 206
Cdd:TIGR00956 285 YEGYQI 290
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
24-201 |
2.57e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.10 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 24 VPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRyrelaeplrtvgavleaSNYHPARsgrnhlrvlaaaagl 103
Cdd:cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------------PVYKPQY--------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 104 spgrvdevlaeVELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGG-TVFV 182
Cdd:cd03222 70 -----------IDLSG-----------GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKkTALV 127
|
170
....*....|....*....
gi 1671887361 183 SSHVLGEMSQLADEVVIIH 201
Cdd:cd03222 128 VEHDLAVLDYLSDRIHVFE 146
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
71-207 |
3.43e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 44.17 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 71 PLRTVGAVLEASNYhparsgrnhLRVLAAAAGLSpGRVdEVLAEVELSG-AAKRRVGGYSLGMRQRLSVA----AALLGE 145
Cdd:cd03270 91 PRSTVGTVTEIYDY---------LRLLFARVGIR-ERL-GFLVDVGLGYlTLSRSAPTLSGGEAQRIRLAtqigSGLTGV 159
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1671887361 146 peLLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLgEMSQLADEVVII------HRGKLVA 207
Cdd:cd03270 160 --LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTIRAADHVIDIgpgagvHGGEIVA 224
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-188 |
3.77e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.13 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 26 KGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVsgrryrelaeplrtvgavleasnyhparsgrnhlrvlaaaagLSP 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------------------------IDG 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 106 GRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:smart00382 39 EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
|
...
gi 1671887361 186 VLG 188
Cdd:smart00382 119 VIL 121
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-216 |
4.11e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 44.41 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSA----TAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLAlPTSGRAT-------------VSGR 63
Cdd:PRK15093 3 LLDIRNLTIEFKTSdgwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT-KDNWRVTadrmrfddidllrLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 64 RYRELA---------------EPLRTVGAVLEASNYHPARSGRNHLRVlaaaaGLSPGRVDEVLAEVELSGAAK-RRVGG 127
Cdd:PRK15093 82 ERRKLVghnvsmifqepqsclDPSERVGRQLMQNIPGWTYKGRWWQRF-----GWRKRRAIELLHRVGIKDHKDaMRSFP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 128 YSL--GMRQRLSVAAALLGEPELLVLDEPANGLDPEG-IRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGK 204
Cdd:PRK15093 157 YELteGECQKVMIAIALANQPRLLIADEPTNAMEPTTqAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
|
250
....*....|..
gi 1671887361 205 LVAHQSVAELTV 216
Cdd:PRK15093 237 TVETAPSKELVT 248
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
19-214 |
5.79e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 44.52 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHPARSGRNHLRVLA 98
Cdd:TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIK 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAA-----GLSPGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLD--PEGIRWLRNF 169
Cdd:TIGR01271 524 ACQleediALFPEKDKTVLGEggITLSG-----------GQRARISLARAVYKDADLYLLDSPFTHLDvvTEKEIFESCL 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1671887361 170 LRSFAGRgGTVFVSSHVlgEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:TIGR01271 593 CKLMSNK-TRILVTSKL--EHLKKADKILLLHEGVCYFYGTFSEL 634
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
19-215 |
6.55e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.58 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlALPTSGRATVSGRRYRELAEPLRTV------GAVLEASNYHPARSGRN 92
Cdd:PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLG-ELSHAETSSVVIRGSVAYVPQVSWIfnatvrENILFGSDFESERYWRA 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 93 -HLRVLAAAAGLSPGRvdevlaevELSGAAKRRVGgYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWLRNFLR 171
Cdd:PLN03232 714 iDVTALQHDLDLLPGR--------DLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1671887361 172 SFAGRGGT-VFVSS--HVLGEMsqlaDEVVIIHRGKLVAHQSVAELT 215
Cdd:PLN03232 785 KDELKGKTrVLVTNqlHFLPLM----DRIILVSEGMIKEEGTFAELS 827
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
16-159 |
1.16e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 42.91 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 16 AVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELaEP-LRTVGAVLEasNY--HPARSGRN 92
Cdd:PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL-EPaDRDIAMVFQ--NYalYPHMSVRE 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1671887361 93 H----LRVlaaaAGLSPG----RVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:PRK11650 96 NmaygLKI----RGMPKAeieeRVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
32-180 |
1.19e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.46 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 32 FLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELA-EPL------------------------RTVGAVLEASNYHP 86
Cdd:PRK10938 34 FVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSfEQLqklvsdewqrnntdmlspgeddtgRTTAEIIQDEVKDP 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 ARSGRnhlrvLAAAAGLSPgrvdevlaevELSgaakRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGLDPEGIRWL 166
Cdd:PRK10938 114 ARCEQ-----LAQQFGITA----------LLD----RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174
|
170
....*....|....
gi 1671887361 167 RNFLRSFAGRGGTV 180
Cdd:PRK10938 175 AELLASLHQSGITL 188
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
136-234 |
1.34e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 43.00 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 136 LSVAAALL--GEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRgGTVFVSSH---VLGEMSqlADEVVIIHRGKLvahqs 210
Cdd:COG4637 267 LALLAALLspRPPPLLCIEEPENGLHPDLLPALAELLREASER-TQVIVTTHspaLLDALE--PEEVLVLEREDD----- 338
|
90 100
....*....|....*....|....
gi 1671887361 211 vaeltvqaaGATRVRSPRADELLA 234
Cdd:COG4637 339 ---------GETRIRRLSDLELPE 353
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-271 |
1.86e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.84 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRAtvsgrryreLAEplRTVGAVLEA---------SN---YHP 86
Cdd:PTZ00243 678 DVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV---------WAE--RSIAYVPQQawimnatvrGNilfFDE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 87 ARSGRNH--LRV--LAAAAGLSPGRVDEVLAE--VELSGAAKRRVggyslgmrqrlSVAAALLGEPELLVLDEPANGLDP 160
Cdd:PTZ00243 747 EDAARLAdaVRVsqLEADLAQLGGGLETEIGEkgVNLSGGQKARV-----------SLARAVYANRDVYLLDDPLSALDA 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 161 E-GIRWLRN-FLRSFAGRggTVFVSSHVLgEMSQLADEVVIIHRGKLVAHQSVAELTvqaagATRVRSPRADELLAR--L 236
Cdd:PTZ00243 816 HvGERVVEEcFLGALAGK--TRVLATHQV-HVVPRADYVVALGDGRVEFSGSSADFM-----RTSLYATLAAELKENkdS 887
|
250 260 270
....*....|....*....|....*....|....*....
gi 1671887361 237 RAGGIDAEPTEA----GALAVHAPPERVGDLAAEAGIPL 271
Cdd:PTZ00243 888 KEGDADAEVAEVdaapGGAVDHEPPVAKQEGNAEGGDGA 926
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
21-219 |
3.45e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 41.82 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 21 SFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYReLAEPLRTV--GAVL-----EASNYHPARS---- 89
Cdd:PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID-IRSPRDAIraGIMLcpedrKAEGIIPVHSvadn 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 90 -----GRNHLRvlaaAAGLSPGRVDEVLAEVEL------SGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLDEPANGL 158
Cdd:PRK11288 352 inisaRRHHLR----AGCLINNRWEAENADRFIrslnikTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1671887361 159 DPEGIRWLRNFLRSFAGRGGTVFVSSHVLGEMSQLADEVVIIHRGKLVAHQSVAELTVQAA 219
Cdd:PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-185 |
7.59e-04 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 40.40 E-value: 7.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRFRSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGlaLP----TSGRATVSGRRYRELAEPLRTVG 76
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPaykiLEGDILFKGESILDLEPEERAHL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 77 AVLEASNYH---PARSGRNHLRvLAAAA--------GLSPGRVDEVLAE----VELSGA-AKRRVG-GYSLGMRQRLSVA 139
Cdd:CHL00131 85 GIFLAFQYPieiPGVSNADFLR-LAYNSkrkfqglpELDPLEFLEIINEklklVGMDPSfLSRNVNeGFSGGEKKRNEIL 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 140 AALLGEPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSH 185
Cdd:CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-159 |
8.54e-04 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 39.76 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 1 MIEVERLTKRF----RSATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRT-- 74
Cdd:PRK10584 6 IVEVHHLKKSVgqgeHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAkl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 75 ----VGAVLEASNYHPARSGRNHLRVLAAAAGL----SPGRVDEVLAEVELSGAAKRRVGGYSLGMRQRLSVAAALLGEP 146
Cdd:PRK10584 86 rakhVGFVFQSFMLIPTLNALENVELPALLRGEssrqSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165
|
170
....*....|...
gi 1671887361 147 ELLVLDEPANGLD 159
Cdd:PRK10584 166 DVLFADEPTGNLD 178
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
123-214 |
1.14e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 40.38 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 123 RRVGGYSLGMRQRLSVA----AALLGEpeLLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVlGEMSQLADEVV 198
Cdd:TIGR00630 484 RAAGTLSGGEAQRIRLAtqigSGLTGV--LYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHD-EDTIRAADYVI 560
|
90 100
....*....|....*....|..
gi 1671887361 199 II------HRGKLVAHQSVAEL 214
Cdd:TIGR00630 561 DIgpgageHGGEVVASGTPEEI 582
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
19-214 |
1.24e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 39.84 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 19 DLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGRATVSGRRYRELAEPLRTVGAVLEASNYHPARSGRNHLRVLA 98
Cdd:cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVK 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 99 AAA-----GLSPGRVDEVLAE--VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANGLD---PEGIrwLRN 168
Cdd:cd03291 135 ACQleediTKFPEKDNTVLGEggITLSG-----------GQRARISLARAVYKDADLYLLDSPFGYLDvftEKEI--FES 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1671887361 169 FLRSFAGRGGTVFVSSHVlgEMSQLADEVVIIHRGKLVAHQSVAEL 214
Cdd:cd03291 202 CVCKLMANKTRILVTSKM--EHLKKADKILILHEGSSYFYGTFSEL 245
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
13-159 |
1.28e-03 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 39.31 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 13 SATAVDDLSFSVPKGRITGFLGPNGAGKTTTLRVLLGLALPTSGR--------ATVSGRRYRELAEPLRTVGAVLEASNY 84
Cdd:PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTllfegediSTLKPEIYRQQVSYCAQTPTLFGDTVY 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 85 H----PARSGRNHLRVLAAAAGLSPGRVDEVLAE---VELSGaakrrvggyslGMRQRLSVAAALLGEPELLVLDEPANG 157
Cdd:PRK10247 99 DnlifPWQIRNQQPDPAIFLDDLERFALPDTILTkniAELSG-----------GEKQRISLIRNLQFMPKVLLLDEITSA 167
|
..
gi 1671887361 158 LD 159
Cdd:PRK10247 168 LD 169
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
2-64 |
1.76e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 39.21 E-value: 1.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1671887361 2 IEVERLtKRFRSAtavdDLSFSVPKgRITGFLGPNGAGKTTTLRVL-LGLALPTSGRATVSGRR 64
Cdd:COG3950 6 LTIENF-RGFEDL----EIDFDNPP-RLTVLVGENGSGKTTLLEAIaLALSGLLSRLDDVKFRK 63
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
125-159 |
2.85e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 39.24 E-value: 2.85e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1671887361 125 VGGY----SLGMRQRLSVAAALLGEPELLVLDEPANGLD 159
Cdd:PTZ00265 1352 VGPYgkslSGGQKQRIAIARALLREPKILLLDEATSSLD 1390
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
128-198 |
3.77e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.04 E-value: 3.77e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1671887361 128 YSL--GMRQRLSVAAALLG---EPELLVLDEPANGLDPEGIRWLRNFLRSFAGRGGTVFVSSHVLgEMSQLADEVV 198
Cdd:PRK00635 808 SSLsgGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVVKVADYVL 882
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
5-44 |
5.66e-03 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 37.70 E-value: 5.66e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1671887361 5 ERLTKRFRSATAVDDLsfsVPKGRITGFLGPNGAGKTTTL 44
Cdd:TIGR03499 175 EALEGMLPVKPEEDPI---LEQGGVIALVGPTGVGKTTTL 211
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
31-152 |
7.55e-03 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 36.96 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1671887361 31 GFLGPNGAGKTTTLRVLLGLALPTSGRATvsgrRYRELAEPLRTVGAVLeasnyhPARSGRNHLRVLAAAAGLSPGRVDE 110
Cdd:PRK15177 17 GILAAPGSGKTTLTRLLCGLDAPDEGDFI----GLRGDALPLGANSFIL------PGLTGEENARMMASLYGLDGDEFSH 86
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1671887361 111 VLAEV-ELSGAAKRRVGGYSLGMRQRLSVAAALLGEPELLVLD 152
Cdd:PRK15177 87 FCYQLtQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD 129
|
|
| |
