NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1631693819|gb|TJZ75305|]
View 

YchJ family protein [Raoultella planticola]

Protein Classification

YchJ family protein( domain architecture ID 11479692)

YchJ family protein similar to Escherichia coli UPF0225 protein YchJ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 3.60e-108

hypothetical protein; Provisional


:

Pssm-ID: 234966  Cd Length: 154  Bit Score: 304.26  E-value: 3.60e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   1 MSPLCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTV 80
Cdd:PRK01617    1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631693819  81 FATDEGRHPDEGFVSFIARYHDDNRPG--AIIERSRFLKENGRWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617   81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 3.60e-108

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 304.26  E-value: 3.60e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   1 MSPLCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTV 80
Cdd:PRK01617    1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631693819  81 FATDEGRHPDEGFVSFIARYHDDNRPG--AIIERSRFLKENGRWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617   81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 4-148 5.46e-81

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 235.12  E-value: 5.46e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   4 LCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTVFAT 83
Cdd:COG3012     5 PCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILAT 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1631693819  84 DEGRHPDEGFVSFIARYHDDNRPGAIIERSRFLKENGRWYYIDGT-RPLIGRndpcpcGSGKKFKK 148
Cdd:COG3012    85 EAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEvAPKPGR------GSGKKFKK 144
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 29-127 1.80e-50

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 156.57  E-value: 1.80e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819  29 DPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTVFATDEGRHPDEGFVSFIARYHDDNRPGA 108
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*....
gi 1631693819 109 IIERSRFLKENGRWYYIDG 127
Cdd:pfam17775  81 LHERSRFVREDGRWYYVDG 99
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 133-151 1.11e-11

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 57.70  E-value: 1.11e-11
                          10
                  ....*....|....*....
gi 1631693819 133 GRNDPCPCGSGKKFKKCCG 151
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 3.60e-108

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 304.26  E-value: 3.60e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   1 MSPLCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTV 80
Cdd:PRK01617    1 MSQLCPCGSALEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTWHPDCHAAAWRAEIIAGFANTEWLGLTV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631693819  81 FATDEGRHPDEGFVSFIARYHDDNRPG--AIIERSRFLKENGRWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ 152
Cdd:PRK01617   81 FEHTWGDADNEGFVEFVARFTEGGKTGrtAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ 154
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 4-148 5.46e-81

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 235.12  E-value: 5.46e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   4 LCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTVFAT 83
Cdd:COG3012     5 PCPCGSGKPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILAT 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1631693819  84 DEGRHPDEGFVSFIARYHDDNRPGAIIERSRFLKENGRWYYIDGT-RPLIGRndpcpcGSGKKFKK 148
Cdd:COG3012    85 EAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEvAPKPGR------GSGKKFKK 144
PRK02250 PRK02250
hypothetical protein; Provisional
 4-151 1.65e-54

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 168.90  E-value: 1.65e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   4 LCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFaKTQWQGLTVFAT 83
Cdd:PRK02250    3 SCPCGSTQTYSQCCEPIHLNHASAQTPEQLMRSRYSAHVLGLVDYVVETYHPSCNAEEQREGIAESI-HSDWLKLEVIKT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819  84 DEGRHPDEGFVSFIARYHDDNRPGAIIERSRFLKENGRWYYIDGTRP-----------------LIGRNDPCPCGSGKKF 146
Cdd:PRK02250   82 EAGSTPNEGFVEFKAYFDEEGKRYCLEERSRFLKENGLWYYIDGTFPeeepeqdprlnqsvsslKQGRNDPCICGSGKKF 161


                  ....*
gi 1631693819 147 KKCCG 151
Cdd:PRK02250  162 KKCCG 166
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 29-127 1.80e-50

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 156.57  E-value: 1.80e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819  29 DPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTVFATDEGRHPDEGFVSFIARYHDDNRPGA 108
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*....
gi 1631693819 109 IIERSRFLKENGRWYYIDG 127
Cdd:pfam17775  81 LHERSRFVREDGRWYYVDG 99
PRK00183 PRK00183
hypothetical protein; Provisional
 2-151 3.49e-49

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 155.34  E-value: 3.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   2 SPLCPCGSALEYSLCCQRYLTGSlPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTVF 81
Cdd:PRK00183    3 VSICPCGSGDLLDACCGRYHAGH-PAPCAEALMRSRYSAYVLGLVDYLVATTLPAQQAGLDRAAIAAWSAQSTWLGLEVE 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1631693819  82 ATDE-GRHPDEGFVSFIARYHDDNRPGAIIERSRFLKENGRWYYIDGTRPL-IGRNDPCPCGSGKKFKKCCG 151
Cdd:PRK00183   82 SSEVlGGQPEHAFVTFTARWHDADGEHSHRERSAFVQHQGRWYFIDPTVPLkAGRNDPCPCGSGQKFKKCCA 153
PRK01752 PRK01752
YchJ family protein;
1-151 2.98e-37

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 124.90  E-value: 2.98e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   1 MSPLCPCGSALEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFRDDLEKGFAKTQWQGLTV 80
Cdd:PRK01752    4 LLEACPCQSGKHYADCCGPFHLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTLLDPAALQTWAENTTWLGLEI 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1631693819  81 FATdEGRHPDEGFVSFIARYHDDNRPGAIIERSRFLKENGRWYYIDGTRPLIGRNDPCPCGSGKKFKKCCG 151
Cdd:PRK01752   84 LAH-ESLTKIHSAVEFKAIFQGEEGEQAHHERSLFVKIDNRWYFVDPTVPLPTMKQPCVCGSGKKFKHCCG 153
PRK04233 PRK04233
hypothetical protein; Provisional
 5-126 3.29e-32

hypothetical protein; Provisional


Pssm-ID: 235261  Cd Length: 129  Bit Score: 111.17  E-value: 3.29e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   5 CPCGSALEYSLCCQRYLTGSlPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQHFrdDLEKGfAKTQWQGLTVF-AT 83
Cdd:PRK04233   10 CPCGRPADYARCCGPYHAGA-AAPDAETLMRARYSAYVRRDADYLLASWHPSTRPAEL--SLDEG-GRTTWLGLTVQrTL 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1631693819  84 DEGrhPDEGFVSFIARYhddnRPGA-----IIERSRFLKENGRWYYID 126
Cdd:PRK04233   86 ETG--ADTAEVVFLARY----RIGGgsavrMTEHSRFVREDGRWYYLD 127
PRK01842 PRK01842
hypothetical protein; Provisional
 5-127 1.99e-30

hypothetical protein; Provisional


Pssm-ID: 234985  Cd Length: 149  Bit Score: 107.20  E-value: 1.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631693819   5 CPCGSA----------LEYSLCCQRYLTGSLPAPDPSQLMRSRYSAFVMKDADYLIATWHPSCQPQhfrdDLEKGFAK-- 72
Cdd:PRK01842   14 CPCGGAapgaaanaraPRYAACCGRFIDGGAAAPTALELMRSRYSAYVLGATDYLRATWDPSTCPA----DLDADPAAad 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1631693819  73 -TQWQGLTV--FATDEGRHPDegfVSFIARYHDDNRPGAIIERSRFLK-ENGRWYYIDG 127
Cdd:PRK01842   90 aPRWLGLAIkrHAQLDATHAE---VEFVARYKVGGRAHRLHETSRFVRdEQGRWRYVDG 145
PRK05590 PRK05590
hypothetical protein; Provisional
 132-151 3.83e-13

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 63.07  E-value: 3.83e-13
                          10        20
                  ....*....|....*....|
gi 1631693819 132 IGRNDPCPCGSGKKFKKCCG 151
Cdd:PRK05590  145 VGRNDPCPCGSGKKYKKCCG 164
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 132-152 2.69e-12

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 63.13  E-value: 2.69e-12
                          10        20
                  ....*....|....*....|.
gi 1631693819 132 IGRNDPCPCGSGKKFKKCCGQ 152
Cdd:COG0653   854 VGRNDPCPCGSGKKYKHCHGK 874
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 133-151 1.11e-11

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 57.70  E-value: 1.11e-11
                          10
                  ....*....|....*....
gi 1631693819 133 GRNDPCPCGSGKKFKKCCG 151
Cdd:TIGR04102  90 NRNDPCPCGSGKKYKKCCG 108
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 132-152 1.27e-10

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 53.37  E-value: 1.27e-10
                          10        20
                  ....*....|....*....|.
gi 1631693819 132 IGRNDPCPCGSGKKFKKCCGQ 152
Cdd:COG3318    24 VGRNDPCPCGSGKKYKKCCGA 44
PRK10396 PRK10396
hypothetical protein; Provisional
 133-150 9.29e-09

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 52.06  E-value: 9.29e-09
                          10
                  ....*....|....*...
gi 1631693819 133 GRNDPCPCGSGKKFKKCC 150
Cdd:PRK10396  202 GRNDPCPCGSGKKFKQCC 219
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 134-151 2.69e-08

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 47.09  E-value: 2.69e-08
                          10
                  ....*....|....*...
gi 1631693819 134 RNDPCPCGSGKKFKKCCG 151
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 136-152 9.63e-08

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 50.08  E-value: 9.63e-08
                          10
                  ....*....|....*..
gi 1631693819 136 DPCPCGSGKKFKKCCGQ 152
Cdd:PRK12904  812 DPCPCGSGKKYKHCHGR 828
secA PRK12901
preprotein translocase subunit SecA; Reviewed
 128-152 2.28e-05

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237256 [Multi-domain]  Cd Length: 1112  Bit Score: 43.09  E-value: 2.28e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 1631693819  128 TRPLIGRNDPCPC-----GSGKKFKKCCGQ 152
Cdd:PRK12901  1071 VEKKIGRNDPVPCqnvdgGSGKKYKFKHAE 1100
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 133-151 2.90e-05

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 41.37  E-value: 2.90e-05
                          10
                  ....*....|....*....
gi 1631693819 133 GRNDPCPCGSGKKFKKCCG 151
Cdd:COG3012     1 PSNSPCPCGSGKPYADCCG 19
PRK12318 PRK12318
methionyl aminopeptidase;
132-149 9.19e-05

methionyl aminopeptidase;


Pssm-ID: 183434 [Multi-domain]  Cd Length: 291  Bit Score: 40.96  E-value: 9.19e-05
                          10
                  ....*....|....*...
gi 1631693819 132 IGRNDPCPCGSGKKFKKC 149
Cdd:PRK12318    1 MKRNDPCWCGSGKKWKHC 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH