|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10808 |
PRK10808 |
outer membrane protein A; Reviewed |
1-356 |
0e+00 |
|
outer membrane protein A; Reviewed
Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 700.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGGKLGWSQYHDTGFygnGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMG 80
Cdd:PRK10808 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQYHDTGY---GFINNNGPTHKNQLGAGAFGGYQANPYLGFEMG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 81 YDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADADGNYGSTGvsRSEHDTGVSPVFAGGLEW 160
Cdd:PRK10808 78 YDWLGRMPYKGDVNNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNVPGAR--GKDHDTGVSPVFAGGVEY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 161 AVTRDIATRLEYQWVNNIGDAGTVGARPDNGMLSLGVSYRFGQEEAAPVVAPAPAPAPEVTTKHFTLKSDVLFNFNKSTL 240
Cdd:PRK10808 156 AITKNWATRLEYQWTNNIGDADTVGARPDNGMLSVGVSYRFGQEEAAPVVAPAPAPAPVVQTKHFTLKSDVLFNFNKATL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 241 KPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARGMGESNPVTGNT 320
Cdd:PRK10808 236 KPEGQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNT 315
|
330 340 350
....*....|....*....|....*....|....*.
gi 1631689312 321 CDNVKARAALIDCLGPDRRVEIEVKGYKDVVTQPQA 356
Cdd:PRK10808 316 CDNVKPRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 351
|
|
| OmpA_membrane |
pfam01389 |
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it ... |
23-203 |
1.48e-86 |
|
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Pssm-ID: 396112 Cd Length: 177 Bit Score: 258.91 E-value: 1.48e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 23 PKDNTWYAGGKLGWSQYHDTGFYgngfqNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQG 102
Cdd:pfam01389 1 PAANTWYTGAKAGWASFHDTGNI-----EGNGPTHENSLTAGAFGGYQINNYLAAELGYDYLGRMPYKGKGKNNAHKAQG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 103 VQLTAKLGYPITDDLDIYTRLGGMVWRADADGNYGSTGvSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVNNIGDAG 182
Cdd:pfam01389 76 VTLSLKLSYPLTDDLDVYGKVGGALVRADYKFYEDANG-KTGNHDTGVSPLFALGVEYAITPELAVRLEYQYLNNIGDLH 154
|
170 180
....*....|....*....|.
gi 1631689312 183 TVGARPDNGMLSLGVSYRFGQ 203
Cdd:pfam01389 155 KQGKRPDNGSASLGISYRFGQ 175
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
230-344 |
4.31e-38 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 131.91 E-value: 4.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 230 DVLFNFNKSTLKPEGQQALDQLYTQLSNMDpkDGSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARG 309
Cdd:cd07185 3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNP--DAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1631689312 310 MGESNPVTGNtcDNVKARAAlidclgpDRRVEIEV 344
Cdd:cd07185 81 YGESRPIASN--DTEEGRAK-------NRRVEIVI 106
|
|
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
43-346 |
1.07e-37 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 136.84 E-value: 1.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 43 GFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTR 122
Cdd:COG2885 1 LSEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 123 LGGMVWRADADGNYGSTGVSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVNNIGDAGTVGARPDNGMLSLGVSYRFG 202
Cdd:COG2885 81 TAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 203 QEEAAPVVAPAPAPAPEVTTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMdpKDGSAVVLGYTDRIGSDAYNQQ 282
Cdd:COG2885 161 DAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEN--PDLRIEIEGHTDSRGSDAYNLA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631689312 283 LSEKRAQSVVDYLVSKGIPAGKISARGMGESNPVtgNTCDNVKARAAlidclgpDRRVEIEVKG 346
Cdd:COG2885 239 LSERRAEAVKDYLVSKGIPASRITAVGYGESRPV--ASNDTEEGRAK-------NRRVEIVVLK 293
|
|
| pdsO |
TIGR03789 |
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ... |
227-316 |
1.11e-12 |
|
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274783 [Multi-domain] Cd Length: 243 Bit Score: 66.75 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 227 LKSDVLFNFNKSTLKPEGQQALDQLyTQLSNMDPKdgSAVVL-GYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKI 305
Cdd:TIGR03789 137 LGMNVQFRTGSSDIEPHFQPQLDEV-ATLMKQSPE--LKLDLsGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARL 213
|
90
....*....|.
gi 1631689312 306 SARGMGESNPV 316
Cdd:TIGR03789 214 TTQAFGESAPL 224
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10808 |
PRK10808 |
outer membrane protein A; Reviewed |
1-356 |
0e+00 |
|
outer membrane protein A; Reviewed
Pssm-ID: 236764 [Multi-domain] Cd Length: 351 Bit Score: 700.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYAGGKLGWSQYHDTGFygnGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMG 80
Cdd:PRK10808 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQYHDTGY---GFINNNGPTHKNQLGAGAFGGYQANPYLGFEMG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 81 YDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADADGNYGSTGvsRSEHDTGVSPVFAGGLEW 160
Cdd:PRK10808 78 YDWLGRMPYKGDVNNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKSNVPGAR--GKDHDTGVSPVFAGGVEY 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 161 AVTRDIATRLEYQWVNNIGDAGTVGARPDNGMLSLGVSYRFGQEEAAPVVAPAPAPAPEVTTKHFTLKSDVLFNFNKSTL 240
Cdd:PRK10808 156 AITKNWATRLEYQWTNNIGDADTVGARPDNGMLSVGVSYRFGQEEAAPVVAPAPAPAPVVQTKHFTLKSDVLFNFNKATL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 241 KPEGQQALDQLYTQLSNMDPKDGSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARGMGESNPVTGNT 320
Cdd:PRK10808 236 KPEGQQALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNT 315
|
330 340 350
....*....|....*....|....*....|....*.
gi 1631689312 321 CDNVKARAALIDCLGPDRRVEIEVKGYKDVVTQPQA 356
Cdd:PRK10808 316 CDNVKPRAALIDCLAPDRRVEIEVKGIKDVVTQPQA 351
|
|
| OmpA_membrane |
pfam01389 |
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it ... |
23-203 |
1.48e-86 |
|
OmpA-like transmembrane domain; The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Pssm-ID: 396112 Cd Length: 177 Bit Score: 258.91 E-value: 1.48e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 23 PKDNTWYAGGKLGWSQYHDTGFYgngfqNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQG 102
Cdd:pfam01389 1 PAANTWYTGAKAGWASFHDTGNI-----EGNGPTHENSLTAGAFGGYQINNYLAAELGYDYLGRMPYKGKGKNNAHKAQG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 103 VQLTAKLGYPITDDLDIYTRLGGMVWRADADGNYGSTGvSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVNNIGDAG 182
Cdd:pfam01389 76 VTLSLKLSYPLTDDLDVYGKVGGALVRADYKFYEDANG-KTGNHDTGVSPLFALGVEYAITPELAVRLEYQYLNNIGDLH 154
|
170 180
....*....|....*....|.
gi 1631689312 183 TVGARPDNGMLSLGVSYRFGQ 203
Cdd:pfam01389 155 KQGKRPDNGSASLGISYRFGQ 175
|
|
| OmpA_C-like |
cd07185 |
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ... |
230-344 |
4.31e-38 |
|
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Pssm-ID: 143586 [Multi-domain] Cd Length: 106 Bit Score: 131.91 E-value: 4.31e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 230 DVLFNFNKSTLKPEGQQALDQLYTQLSNMDpkDGSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARG 309
Cdd:cd07185 3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNP--DAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1631689312 310 MGESNPVTGNtcDNVKARAAlidclgpDRRVEIEV 344
Cdd:cd07185 81 YGESRPIASN--DTEEGRAK-------NRRVEIVI 106
|
|
| OmpA |
COG2885 |
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ... |
43-346 |
1.07e-37 |
|
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442131 [Multi-domain] Cd Length: 294 Bit Score: 136.84 E-value: 1.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 43 GFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTR 122
Cdd:COG2885 1 LSEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 123 LGGMVWRADADGNYGSTGVSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVNNIGDAGTVGARPDNGMLSLGVSYRFG 202
Cdd:COG2885 81 TAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 203 QEEAAPVVAPAPAPAPEVTTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMdpKDGSAVVLGYTDRIGSDAYNQQ 282
Cdd:COG2885 161 DAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEN--PDLRIEIEGHTDSRGSDAYNLA 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631689312 283 LSEKRAQSVVDYLVSKGIPAGKISARGMGESNPVtgNTCDNVKARAAlidclgpDRRVEIEVKG 346
Cdd:COG2885 239 LSERRAEAVKDYLVSKGIPASRITAVGYGESRPV--ASNDTEEGRAK-------NRRVEIVVLK 293
|
|
| OmpA |
pfam00691 |
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ... |
233-327 |
1.29e-25 |
|
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.
Pssm-ID: 425825 [Multi-domain] Cd Length: 95 Bit Score: 98.59 E-value: 1.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 233 FNFNKSTLKPEGQQALDQLYTQLSNMDPKDgSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARGMGE 312
Cdd:pfam00691 1 FDPGSSQLTPKAKATLDEIADLLKFPELKN-TITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGA 79
|
90
....*....|....*
gi 1631689312 313 SNPVTGNTCDNVKAR 327
Cdd:pfam00691 80 TKPITDNKTPEGRAR 94
|
|
| MotB |
COG1360 |
Flagellar motor protein MotB [Cell motility]; |
225-342 |
4.39e-21 |
|
Flagellar motor protein MotB [Cell motility];
Pssm-ID: 440971 [Multi-domain] Cd Length: 174 Bit Score: 88.75 E-value: 4.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 225 FTLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMDpkdGSAVVLGYTDR--IGSDAY--NQQLSEKRAQSVVDYLVSKGI 300
Cdd:COG1360 55 IEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP---NRIRVEGHTDNvpISTARFpsNWELSAARAAAVVRYLIEGGV 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1631689312 301 PAGKISARGMGESNPVTGNtcDNVKARAAlidclgpDRRVEI 342
Cdd:COG1360 132 PPERLSAVGYGDTRPLAPN--DTPEGRAR-------NRRVEI 164
|
|
| OMP_b-brl |
pfam13505 |
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ... |
7-201 |
1.96e-18 |
|
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.
Pssm-ID: 463903 [Multi-domain] Cd Length: 175 Bit Score: 81.68 E-value: 1.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 7 AIAVALAGFATVAQAAPKDNTWYAGGKLGWsqyhdTGFYGNGFQNNNGPtrndqlGAGAFGGYQVNPYLGFEMGYDWLGR 86
Cdd:pfam13505 1 AALLLLAAFSAAAAAAEEFGGFYVGGGLGN-----ANFSFDGDGTDSGG------GFGVGAGYDFNDYLGVEGELGYGSD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 87 MAYKGSVDNGA-FKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADADGNygstGVSRSEHDTGVSpvFAGGLEWAVTRD 165
Cdd:pfam13505 70 DDYSGGGNTDAnIRSLSIGVNLGYRFPLSDSLLPYGGAGYGYSKLEGDYN----GVSDSGTDFGFG--YGAGVEYALTDH 143
|
170 180 190
....*....|....*....|....*....|....*.
gi 1631689312 166 IATRLEYqwvnNIGDAGTVGARPDNGMLSLGVSYRF 201
Cdd:pfam13505 144 LAVRAEY----RYTDIKSGGDDLKNNTFQLGVGYRF 175
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
225-342 |
2.12e-15 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 76.16 E-value: 2.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 225 FTLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMD---PKDGSAV--VLGYTDRI---GSDAY--NQQLSEKRAQSVVDY 294
Cdd:PRK09039 220 FVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAkeiPPEINWVlrVDGHTDNVplsGTGRFrdNWELSSARAISVVKF 299
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1631689312 295 LVSKGIPAGKISARGMGESNPV-TGNTCDnvkARAAlidclgpDRRVEI 342
Cdd:PRK09039 300 LIALGVPADRLAAAGFGEFQPLdPGDTPE---ARAR-------NRRIEL 338
|
|
| LomR |
COG3637 |
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis]; |
61-201 |
2.68e-15 |
|
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442854 [Multi-domain] Cd Length: 154 Bit Score: 72.31 E-value: 2.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 61 LGAGAFGGYQV---NPYLGFEMGYDWLGrMAYKGSVDNGAFKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADADGNYG 137
Cdd:COG3637 9 LAAGVQAGYNFqfdNFVLGVEGDYSYSD-IDGDSSGTTGSGDLDYLSLRARAGYDFNDRFLPYATAGVAYARVKVTGNTG 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1631689312 138 sTGVSRSEHDTGVSPVFAGGLEWAVTRDIATRLEYQWVN----NIGDAGTVGARPDNGMLSLGVSYRF 201
Cdd:COG3637 88 -SGTSGSDSDTRFGWTVGAGVEYALTDNWSLRLEYRYTDlgdaDFDGGGSVDVDLDSHTVRVGLNYRF 154
|
|
| PRK10510 |
PRK10510 |
OmpA family lipoprotein; |
229-342 |
4.50e-14 |
|
OmpA family lipoprotein;
Pssm-ID: 182507 [Multi-domain] Cd Length: 219 Bit Score: 70.67 E-value: 4.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 229 SDVLFNFNKSTLKPEGQQALDQLYTQLSNMDPkdgSAV-VLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISA 307
Cdd:PRK10510 112 NNVTFDSSSATLKPAGANTLTGVAMVLKEYPK---TAVnVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRT 188
|
90 100 110
....*....|....*....|....*....|....*
gi 1631689312 308 RGMGESNPVTGNTCDNVKARaalidclgpDRRVEI 342
Cdd:PRK10510 189 QGMGPANPIASNSTAEGKAQ---------NRRVEI 214
|
|
| pdsO |
TIGR03789 |
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ... |
227-316 |
1.11e-12 |
|
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274783 [Multi-domain] Cd Length: 243 Bit Score: 66.75 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 227 LKSDVLFNFNKSTLKPEGQQALDQLyTQLSNMDPKdgSAVVL-GYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKI 305
Cdd:TIGR03789 137 LGMNVQFRTGSSDIEPHFQPQLDEV-ATLMKQSPE--LKLDLsGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARL 213
|
90
....*....|.
gi 1631689312 306 SARGMGESNPV 316
Cdd:TIGR03789 214 TTQAFGESAPL 224
|
|
| PRK08126 |
PRK08126 |
hypothetical protein; Provisional |
226-344 |
2.85e-12 |
|
hypothetical protein; Provisional
Pssm-ID: 236157 [Multi-domain] Cd Length: 432 Bit Score: 67.41 E-value: 2.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 226 TLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMDpkdGSAVVLGYTD----RIGSDAYNQQLSEKRAQSVVDYLVSKGIP 301
Cdd:PRK08126 320 VFRGDAMFVPGQATVNPAMGPLIAKIAREIARVG---GKVTVTGHTDnqpiRSAQFASNLVLSEKRAAQVAQMLQSAGVP 396
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1631689312 302 AGKISARGMGESNPVTGNTCDNVKARaalidclgpDRRVEIEV 344
Cdd:PRK08126 397 ASRLEAVGKGDAQPVADNRTPQGRAQ---------NRRVEITV 430
|
|
| PRK09967 |
PRK09967 |
OmpA family protein; |
227-342 |
5.92e-12 |
|
OmpA family protein;
Pssm-ID: 182172 [Multi-domain] Cd Length: 160 Bit Score: 63.07 E-value: 5.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 227 LKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMDPKdgSAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKG-IPAGKI 305
Cdd:PRK09967 50 LSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLT--HARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGqIPRSNL 127
|
90 100 110
....*....|....*....|....*....|....*..
gi 1631689312 306 SARGMGESNPVTGNtcDNVKARAAlidclgpDRRVEI 342
Cdd:PRK09967 128 TTQGLGKKYPIASN--KTAQGRAE-------NRRVAV 155
|
|
| PRK09040 |
PRK09040 |
hypothetical protein; Provisional |
231-342 |
3.49e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 181620 [Multi-domain] Cd Length: 214 Bit Score: 59.26 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 231 VLFNFNKSTLKPEGQQALDQLYTQLSN-MDPKDGSAVVLGYTD----RIGSDAY--NQQLSEKRAQSVVDYLVSKGIPAG 303
Cdd:PRK09040 90 VLFALNSDQLQPEGRELLKSLAGPLAAyLRARDEILMVSGFTDdqpvRAGNRRFadNWELSAQRALTVTRALIDAGVPAS 169
|
90 100 110
....*....|....*....|....*....|....*....
gi 1631689312 304 KISARGMGESNPVTGNTCDNVKARaalidclgpDRRVEI 342
Cdd:PRK09040 170 SVFAAAFGSEQPVASNADDEGRAK---------NRRVEI 199
|
|
| PRK07033 |
PRK07033 |
DotU family type VI secretion system protein; |
226-344 |
3.57e-10 |
|
DotU family type VI secretion system protein;
Pssm-ID: 180801 [Multi-domain] Cd Length: 427 Bit Score: 60.83 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 226 TLKSDVLFNFNKSTLKPEGQQALDQLYTQLSNMDpkdGSAVVLGYTD----RIGSDAYNQQLSEKRAQSVVDYLVSKGIP 301
Cdd:PRK07033 311 TLRGDGLFASASTSVRDRYQPVLARVADALNQVK---GNVLVTGYSDnvpiRTARFPSNWELSQARAQAVRALLAARLGQ 387
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1631689312 302 AGKISARGMGESNPVTGNTCDNVKARaalidclgpDRRVEIEV 344
Cdd:PRK07033 388 PERVTAEGRGDSDPVAPNDSAENRAR---------NRRVEITL 421
|
|
| PRK09038 |
PRK09038 |
flagellar motor protein MotD; Reviewed |
227-342 |
1.31e-08 |
|
flagellar motor protein MotD; Reviewed
Pssm-ID: 181618 [Multi-domain] Cd Length: 281 Bit Score: 55.40 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 227 LKSDVLFNFNKSTLKPEGQQALDQLYTQLSnmdPKDGSAVVLGYTDR--IGSDAY--NQQLSEKRAQSVVDYLVSKGIPA 302
Cdd:PRK09038 131 INSSLLFGSGDAMLSDQAFAILEKVAEVLK---PAPNPIHVEGFTDNvpIATAQFpsNWELSAARAASVVRLLADDGVAP 207
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1631689312 303 GKISARGMGESNPVTGNtcDNVKARAAlidclgpDRRVEI 342
Cdd:PRK09038 208 SRLAAVGYGEFQPVADN--DTAEGRAR-------NRRVVL 238
|
|
| motB |
PRK08457 |
flagellar motor protein MotB; Reviewed |
254-342 |
6.85e-07 |
|
flagellar motor protein MotB; Reviewed
Pssm-ID: 181435 [Multi-domain] Cd Length: 257 Bit Score: 50.10 E-value: 6.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 254 QLSNMDPKDGSAVVLGYTD---RIGSD-AYNQQLSEKRAQSVVDYLVSKGIPAGKISARGMGESNPVTGNtcDNVKARAA 329
Cdd:PRK08457 147 KIITKLPKQVKINVRGYTDnspLNKSRyKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPN--DSLENRLK 224
|
90
....*....|...
gi 1631689312 330 lidclgpDRRVEI 342
Cdd:PRK08457 225 -------NNRVEI 230
|
|
| PRK10802 |
PRK10802 |
peptidoglycan-associated lipoprotein Pal; |
231-315 |
1.59e-05 |
|
peptidoglycan-associated lipoprotein Pal;
Pssm-ID: 182744 [Multi-domain] Cd Length: 173 Bit Score: 44.86 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 231 VLFNFNKSTLKPEGQQALDQLYTQL-SNMDPKdgsAVVLGYTDRIGSDAYNQQLSEKRAQSVVDYLVSKGIPAGKISARG 309
Cdd:PRK10802 71 VYFDLDKYDIRSDFAQMLDAHANFLrSNPSYK---VTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVS 147
|
....*.
gi 1631689312 310 MGESNP 315
Cdd:PRK10802 148 YGKEKP 153
|
|
| PRK14693 |
PRK14693 |
hypothetical protein; Provisional |
225-354 |
3.43e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 173156 [Multi-domain] Cd Length: 552 Bit Score: 45.52 E-value: 3.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631689312 225 FTLKSDVLFNFNKSTLKPEGQQALDQLYTQLSnmdPKDGSAVVLGYTD----RIGSDAYNQQLSEKRAQSVVDYLVSKGI 300
Cdd:PRK14693 368 LVFKSDGAFDVGKANVRADFMHNIERLGLAFA---PWPGDLEVIGHTDsrpiRTSEFPDNQALSEARARNVADELRKTAL 444
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1631689312 301 PAG----------KISARGMGESNPVtgntcDNVKARAAlidcLGPDRRVEIEVKGYKDVVTQP 354
Cdd:PRK14693 445 PGGarapenavqrNIEYSGRGDAQPI-----DTAKTAAA----YERNRRVDVLWKVIPDGAQQS 499
|
|
| |
