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Conserved domains on  [gi|1631683330|gb|TJZ64913|]
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tRNA 2-thiouridine(34) synthase MnmA [Raoultella planticola]

Protein Classification

MnmA/TRMU family protein( domain architecture ID 11422314)

MnmA/TRMU family protein similar to tRNA-specific 2-thiouridylase MnmA that catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MnmA COG0482
tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ...
21-380 0e+00

tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain is part of the Pathway/BioSystem: tRNA modification


:

Pssm-ID: 440250 [Multi-domain]  Cd Length: 353  Bit Score: 635.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDD--GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:COG0482     1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVTMKLWDDDDasGSGGCCSLEDIEDARRVADKLGIPHYVVDFEEEFKDRVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:COG0482    81 DYFLDEYLAGRTPNPCVLCNREIKFGALLEKA-LELGADYIATGHYARVEEKDGRYELLRGVDPNKDQSYFLYRLTQEQL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:COG0482   160 SKTLFPLGELTKPEVREIAEELGLPVADKKDSQGICFIGDGDYRDFLERYLPEKPGDIVDLDGKVLGEHDGLHYYTIGQR 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIGGtkegsEDPWYVVDKDVENNILVVAQGHDhprLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKA 338
Cdd:COG0482   240 KGLGIGG-----GEPLYVVGKDPETNTVIVGQGEA---LYSRELTAEDVNWISGEPPEEPLRCTAKIRYRQPPVPATLTP 311
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIEQRLP 380
Cdd:COG0482   312 LEDGRVRVEFDEPQRAVTPGQSAVFYDGDRVLGGGIIERTER 353
 
Name Accession Description Interval E-value
MnmA COG0482
tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ...
21-380 0e+00

tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440250 [Multi-domain]  Cd Length: 353  Bit Score: 635.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDD--GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:COG0482     1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVTMKLWDDDDasGSGGCCSLEDIEDARRVADKLGIPHYVVDFEEEFKDRVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:COG0482    81 DYFLDEYLAGRTPNPCVLCNREIKFGALLEKA-LELGADYIATGHYARVEEKDGRYELLRGVDPNKDQSYFLYRLTQEQL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:COG0482   160 SKTLFPLGELTKPEVREIAEELGLPVADKKDSQGICFIGDGDYRDFLERYLPEKPGDIVDLDGKVLGEHDGLHYYTIGQR 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIGGtkegsEDPWYVVDKDVENNILVVAQGHDhprLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKA 338
Cdd:COG0482   240 KGLGIGG-----GEPLYVVGKDPETNTVIVGQGEA---LYSRELTAEDVNWISGEPPEEPLRCTAKIRYRQPPVPATLTP 311
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIEQRLP 380
Cdd:COG0482   312 LEDGRVRVEFDEPQRAVTPGQSAVFYDGDRVLGGGIIERTER 353
mnmA PRK00143
tRNA-specific 2-thiouridylase MnmA; Reviewed
21-376 0e+00

tRNA-specific 2-thiouridylase MnmA; Reviewed


Pssm-ID: 234664 [Multi-domain]  Cd Length: 346  Bit Score: 628.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDD--GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:PRK00143    1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDetGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADvngKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:PRK00143   81 DYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYA-RELGADYIATGHYARIRD---GRELLRGVDPNKDQSYFLYQLTQEQL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:PRK00143  157 AKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEIVDLDGKVLGEHKGLMYYTIGQR 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIGGTKEgsedPWYVVDKDVENNILVVAQGhdhPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKa 338
Cdd:PRK00143  237 KGLGIGGDGE----PWYVVGKDPETNTVVVGQG---EALYSRELIASDLNWVGGEPPEEPFECTAKIRYRQKPVPATVE- 308
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIE 376
Cdd:PRK00143  309 LEDDRVEVEFDEPQRAVTPGQAAVFYDGDRVLGGGIIE 346
trmU TIGR00420
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA ...
21-375 0e+00

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 273069 [Multi-domain]  Cd Length: 352  Bit Score: 576.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGEEY--CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:TIGR00420   1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGhgCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:TIGR00420  81 EPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGD-EIGEHQGLMYHTLGQ 257
Cdd:TIGR00420 161 AKLLFPLGELLKPEVRQIAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLPVKPGVIITVDGQsVIGEHDGLWFYTIGQ 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 258 RKGLGIGGTKEgsedPWYVVDKDVENNILVVaqGHDHPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVK 337
Cdd:TIGR00420 241 RKGLGIGGAAE----PWFVVEKDLETNELVV--SHGKPDLASRGLLAQQFHWLDDEPNPFEMRCTVKIRYRQVPVQCKLK 314
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1631683330 338 ALDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:TIGR00420 315 LLDDNLIEVIFDEPQAGVTPGQSAVLYKGDICLGGGII 352
MnmA_TRMU-like cd01998
MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial ...
22-375 0e+00

MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) and mitochondrial tRNA-specific 2-thiouridylase 1 (TRMU or MTU1, EC 2.8.1.14). MnmA catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. TRMU/MTU1 catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln); this is required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. This family belongs to the adenine nucleotide alpha hydrolase (AANH) superfamily that also includes other N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467502 [Multi-domain]  Cd Length: 349  Bit Score: 559.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  22 KVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGE-EYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFEL 100
Cdd:cd01998     1 KVAVAMSGGVDSSVAAALLKEQGYDVIGVFMKNWDDEDNEkGGCCSEEDIEDARRVADQLGIPLYVVDFSEEYWERVFDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 101 FLAEYKAGRTPNPDILCNKEIKFKAFLEfAAEDLGADYIATGHYVRRADVN-GKSQLLRGLDGNKDQSYFLYTLSHEQIA 179
Cdd:cd01998    81 FLEEYKAGRTPNPDVLCNREIKFGALLD-AAKKLGADYIATGHYARIEEDNrGRYRLLRAVDPNKDQSYFLSRLSQEQLS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 180 QSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQ-PGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:cd01998   160 RTLFPLGHLTKSEVREIAREAGLPVAEKKDSQGICFIGKRDFRDFLKEYLPEKlPGPIVDIDGKVLGEHKGLWFYTIGQR 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIggtkeGSEDPWYVVDKDVENNILVVAQGhdHPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKA 338
Cdd:cd01998   240 KGLGI-----AAGEPLYVVKKDPEKNIVVVGPG--HPALFSDTLRASDLNWISPEPPLEPLECEAKIRYRQPPVPCTVTP 312
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:cd01998   313 LDDGRLKVEFDEPQRAVTPGQAAVFYDGDEVLGGGII 349
tRNA_Me_trans pfam03054
tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA ...
21-218 2.25e-115

tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 460787 [Multi-domain]  Cd Length: 202  Bit Score: 333.84  E-value: 2.25e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEED---DGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNV 97
Cdd:pfam03054   1 MKVVVAMSGGVDSSVAAYLLKEQGHNVIGVFMKNWDEEqslDEEGKCCSEEDLADAQRVCEQLGIPLYVVNFEKEYWEDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  98 FELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRAD-VNGKSQLLRGLDGNKDQSYFLYTLSHE 176
Cdd:pfam03054  81 FEPFLDEYKNGRTPNPDVLCNKEIKFGALLDYALENLGADYVATGHYARVSLnKDGGSELLRALDKNKDQSYFLSTLSQE 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1631683330 177 QIAQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGE 218
Cdd:pfam03054 161 QLEKLLFPLGELTKEEVRKIAKEAGLATAKKKDSQGICFIGK 202
 
Name Accession Description Interval E-value
MnmA COG0482
tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ...
21-380 0e+00

tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440250 [Multi-domain]  Cd Length: 353  Bit Score: 635.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDD--GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:COG0482     1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVTMKLWDDDDasGSGGCCSLEDIEDARRVADKLGIPHYVVDFEEEFKDRVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:COG0482    81 DYFLDEYLAGRTPNPCVLCNREIKFGALLEKA-LELGADYIATGHYARVEEKDGRYELLRGVDPNKDQSYFLYRLTQEQL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:COG0482   160 SKTLFPLGELTKPEVREIAEELGLPVADKKDSQGICFIGDGDYRDFLERYLPEKPGDIVDLDGKVLGEHDGLHYYTIGQR 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIGGtkegsEDPWYVVDKDVENNILVVAQGHDhprLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKA 338
Cdd:COG0482   240 KGLGIGG-----GEPLYVVGKDPETNTVIVGQGEA---LYSRELTAEDVNWISGEPPEEPLRCTAKIRYRQPPVPATLTP 311
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIEQRLP 380
Cdd:COG0482   312 LEDGRVRVEFDEPQRAVTPGQSAVFYDGDRVLGGGIIERTER 353
mnmA PRK00143
tRNA-specific 2-thiouridylase MnmA; Reviewed
21-376 0e+00

tRNA-specific 2-thiouridylase MnmA; Reviewed


Pssm-ID: 234664 [Multi-domain]  Cd Length: 346  Bit Score: 628.25  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDD--GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:PRK00143    1 KRVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDetGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADvngKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:PRK00143   81 DYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYA-RELGADYIATGHYARIRD---GRELLRGVDPNKDQSYFLYQLTQEQL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:PRK00143  157 AKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPAQPGEIVDLDGKVLGEHKGLMYYTIGQR 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIGGTKEgsedPWYVVDKDVENNILVVAQGhdhPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKa 338
Cdd:PRK00143  237 KGLGIGGDGE----PWYVVGKDPETNTVVVGQG---EALYSRELIASDLNWVGGEPPEEPFECTAKIRYRQKPVPATVE- 308
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVIE 376
Cdd:PRK00143  309 LEDDRVEVEFDEPQRAVTPGQAAVFYDGDRVLGGGIIE 346
trmU TIGR00420
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA ...
21-375 0e+00

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 273069 [Multi-domain]  Cd Length: 352  Bit Score: 576.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGEEY--CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVF 98
Cdd:TIGR00420   1 KKVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGhgCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  99 ELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQI 178
Cdd:TIGR00420  81 EPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 179 AQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQPGKIVTVDGD-EIGEHQGLMYHTLGQ 257
Cdd:TIGR00420 161 AKLLFPLGELLKPEVRQIAKNAGLPTAEKKDSQGICFIGERKFRDFLKKYLPVKPGVIITVDGQsVIGEHDGLWFYTIGQ 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 258 RKGLGIGGTKEgsedPWYVVDKDVENNILVVaqGHDHPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVK 337
Cdd:TIGR00420 241 RKGLGIGGAAE----PWFVVEKDLETNELVV--SHGKPDLASRGLLAQQFHWLDDEPNPFEMRCTVKIRYRQVPVQCKLK 314
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1631683330 338 ALDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:TIGR00420 315 LLDDNLIEVIFDEPQAGVTPGQSAVLYKGDICLGGGII 352
MnmA_TRMU-like cd01998
MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial ...
22-375 0e+00

MnmA/TRMU family 2-thiouridylases and similar proteins; This family is composed of bacterial tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) and mitochondrial tRNA-specific 2-thiouridylase 1 (TRMU or MTU1, EC 2.8.1.14). MnmA catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. TRMU/MTU1 catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln); this is required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. This family belongs to the adenine nucleotide alpha hydrolase (AANH) superfamily that also includes other N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467502 [Multi-domain]  Cd Length: 349  Bit Score: 559.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  22 KVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGE-EYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFEL 100
Cdd:cd01998     1 KVAVAMSGGVDSSVAAALLKEQGYDVIGVFMKNWDDEDNEkGGCCSEEDIEDARRVADQLGIPLYVVDFSEEYWERVFDP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 101 FLAEYKAGRTPNPDILCNKEIKFKAFLEfAAEDLGADYIATGHYVRRADVN-GKSQLLRGLDGNKDQSYFLYTLSHEQIA 179
Cdd:cd01998    81 FLEEYKAGRTPNPDVLCNREIKFGALLD-AAKKLGADYIATGHYARIEEDNrGRYRLLRAVDPNKDQSYFLSRLSQEQLS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 180 QSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLPAQ-PGKIVTVDGDEIGEHQGLMYHTLGQR 258
Cdd:cd01998   160 RTLFPLGHLTKSEVREIAREAGLPVAEKKDSQGICFIGKRDFRDFLKEYLPEKlPGPIVDIDGKVLGEHKGLWFYTIGQR 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 259 KGLGIggtkeGSEDPWYVVDKDVENNILVVAQGhdHPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKA 338
Cdd:cd01998   240 KGLGI-----AAGEPLYVVKKDPEKNIVVVGPG--HPALFSDTLRASDLNWISPEPPLEPLECEAKIRYRQPPVPCTVTP 312
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1631683330 339 LDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:cd01998   313 LDDGRLKVEFDEPQRAVTPGQAAVFYDGDEVLGGGII 349
tRNA_Me_trans pfam03054
tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA ...
21-218 2.25e-115

tRNA methyl transferase HUP domain; This family represents the N-terminal HUP domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 460787 [Multi-domain]  Cd Length: 202  Bit Score: 333.84  E-value: 2.25e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEED---DGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNV 97
Cdd:pfam03054   1 MKVVVAMSGGVDSSVAAYLLKEQGHNVIGVFMKNWDEEqslDEEGKCCSEEDLADAQRVCEQLGIPLYVVNFEKEYWEDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  98 FELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRAD-VNGKSQLLRGLDGNKDQSYFLYTLSHE 176
Cdd:pfam03054  81 FEPFLDEYKNGRTPNPDVLCNKEIKFGALLDYALENLGADYVATGHYARVSLnKDGGSELLRALDKNKDQSYFLSTLSQE 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1631683330 177 QIAQSLFPVGELEKPQVRKIAEDLDLITAKKKDSTGICFIGE 218
Cdd:pfam03054 161 QLEKLLFPLGELTKEEVRKIAKEAGLATAKKKDSQGICFIGK 202
PRK14664 PRK14664
tRNA-specific 2-thiouridylase MnmA; Provisional
16-378 6.52e-81

tRNA-specific 2-thiouridylase MnmA; Provisional


Pssm-ID: 173127 [Multi-domain]  Cd Length: 362  Bit Score: 252.18  E-value: 6.52e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  16 MSESQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNW--EEDDGEEyctaaadladaqaVCDKLGIELHTVNFAAEY 93
Cdd:PRK14664    1 MKESKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWgdEPQDARE-------------LAARMGIEHYVADERVPF 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  94 WDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAaEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTL 173
Cdd:PRK14664   68 KDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWA-DKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRL 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 174 SHEQIAQSLFPVGELEKPQVRK-IAEDLDLITAKKKDSTGICFIgERKFREFLGRYLP-----AQPGKIVTVDGDEIGEH 247
Cdd:PRK14664  147 GQDILRRCIFPLGNYTKQTVREyLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPeldteVGPGWFVNSEGVKLGQH 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 248 QGLMYHTLGQRKGLGIGGTKegsedPWYVVDKDVENNILVVAqghDHPRLMSRGLIAQQLHWVDREPVKGTLRCTVKTRY 327
Cdd:PRK14664  226 KGFPYYTIGQRKGLEIALGK-----PAYVLKINPQKNTVMLG---DAEQLKAEYMLAEQDNIVDEQELFACPDLAVRIRY 297
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1631683330 328 RQTDIPCTVKALDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI-EQR 378
Cdd:PRK14664  298 RSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYEGRRVLGGAFIaSQR 349
mnmA PRK14665
tRNA-specific 2-thiouridylase MnmA; Provisional
16-375 4.11e-71

tRNA-specific 2-thiouridylase MnmA; Provisional


Pssm-ID: 173128 [Multi-domain]  Cd Length: 360  Bit Score: 226.74  E-value: 4.11e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  16 MSESQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKNWEEDDGEEYctaaadLADAQAVCDKLGIELHTVNFAAEYWD 95
Cdd:PRK14665    1 MMEKNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY------LEDARALAERLGIGHITYDARKVFRK 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  96 NVFELFLAEYKAGRTPNPDILCNKEIKFkAFLEFAAEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSH 175
Cdd:PRK14665   75 QIIDYFIDEYMSGHTPVPCTLCNNYLKW-PLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQ 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 176 EQIAQSLFPVGELEKPQVRKIAEDLDLI-TAKKKDSTGICFIgERKFREFLGRYLPA-------------QPGKIVTVDG 241
Cdd:PRK14665  154 EILQRMLLPMGGMTKSEARAYAAERGFEkVAKKRDSLGVCFC-PMDYRSFLKKCLCDesgdknrniyrkvERGRFLDESG 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 242 DEIGEHQGLMYHTLGQRKGLGIGGTKEgsedpwyVVDKDV--ENNILVVAqghDHPRLMSRGLIAQQLHWVDREPVKGTL 319
Cdd:PRK14665  233 NFIAWHEGYPFYTIGQRRGLGIQLNRA-------VFVKEIhpETNEVVLA---SLKALEKTEMWLKDWNIVNESRLLGCD 302
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1631683330 320 RCTVKTRYRQTDIPCTVKALDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:PRK14665  303 DIIVKIRYRKQENHCTVTITPDNLLHVQLHEPLTAIAEGQAAAFYKDGLLLGGGII 358
tRNA_Me_trans_C pfam20258
Aminomethyltransferase beta-barrel domain; This domain is found at the C-terminus of tRNA ...
299-375 1.80e-31

Aminomethyltransferase beta-barrel domain; This domain is found at the C-terminus of tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 466409 [Multi-domain]  Cd Length: 77  Bit Score: 114.29  E-value: 1.80e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1631683330 299 SRGLIAQQLHWVDREPVKGTLRCTVKTRYRQTDIPCTVKALDDDRIEVLFDEPVAAVTPGQSAVFYLGEVCLGGGVI 375
Cdd:pfam20258   1 SDGLRAKDPNWLGDKPPTEPLECTVKVRHRQPPVPCVVELIDDETVEVHFDEPVRAVTPGQAAVFYDGDRCLGGGII 77
tRNA_Me_trans_M pfam20259
tRNA methyl transferase PRC-barrel domain; This family represents a central PRC-barrel domain ...
222-290 3.00e-23

tRNA methyl transferase PRC-barrel domain; This family represents a central PRC-barrel domain in tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.


Pssm-ID: 466410 [Multi-domain]  Cd Length: 66  Bit Score: 91.90  E-value: 3.00e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330 222 REFLGRYLPAQPGKIVTVD-GDEIGEHQGLMYHTLGQRKGLGIGGTKEgsedPWYVVDKDVENNILVVAQ 290
Cdd:pfam20259   1 KDFLKEYLPVKPGDIIDIDtGEVLGEHEGIWFYTIGQRKGLGIGGYGE----PWYVVEKDPKKNTVYVGR 66
TilS COG0037
tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]; tRNA ...
16-143 3.90e-09

tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]; tRNA(Ile)-lysidine synthase TilS/MesJ is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 439807 [Multi-domain]  Cd Length: 235  Bit Score: 56.38  E-value: 3.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  16 MSESQKKVIVGMSGGVDSSVSAWLLLQ----QGYKVEGLFM---KNWEEDDGEEYCtaaadladaQAVCDKLGIELHTVN 88
Cdd:COG0037    11 LLEPGDRILVAVSGGKDSLALLHLLAKlrrrLGFELVAVHVdhgLREESDEDAEFV---------AELCEELGIPLHVVR 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1631683330  89 FAAEYWDNVFELFLaEYKAGRtpnpdilcnkeIKFKAFLEFAAEdLGADYIATGH 143
Cdd:COG0037    82 VDVPAIAKKEGKSP-EAAARR-----------ARYGALYELARE-LGADKIATGH 123
TtuA-like cd01993
tRNA-5-methyluridine(54) 2-sulfurtransferase and similar proteins; tRNA-5-methyluridine(54) ...
16-143 3.02e-07

tRNA-5-methyluridine(54) 2-sulfurtransferase and similar proteins; tRNA-5-methyluridine(54) 2-sulfurtransferase, also called tRNA thiouridine synthetase TtuA, catalyzes the ATP-dependent 2-thiolation of 5-methyluridine residue at position 54 in the T loop of tRNAs, leading to 5-methyl-2-thiouridine (m(5)s(2)U or s(2)T). TtuA belongs to the adenine nucleotide alpha hydrolase superfamily (AANH) that includes N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group. This domain has a strongly conserved motif SGGKD at the N-terminus.


Pssm-ID: 467497 [Multi-domain]  Cd Length: 190  Bit Score: 50.40  E-value: 3.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  16 MSESQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFM----KNWEEDDGEeyctaaadlaDAQAVCDKLGIELHTVNFAA 91
Cdd:cd01993     4 MFEKDDKILVAVSGGKDSLALLAVLKKLGYNVEALYInlgiGEYSEKSEE----------VVKKLAEKLNLPLHVVDLKE 73
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1631683330  92 EYWDNVFELflaEYKAGRTPnpdilCN-----KEIKFKAFlefaAEDLGADYIATGH 143
Cdd:cd01993    74 EYGLGIPEL---AKKSRRPP-----CSvcglvKRYIMNKF----AVENGFDVVATGH 118
QueC-like cd01995
7-cyano-7-deazaguanine synthase QueC and similar proteins; 7-cyano-7-deazaguanine synthase (EC ...
21-142 9.02e-07

7-cyano-7-deazaguanine synthase QueC and similar proteins; 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) is also called 7-cyano-7-carbaguanine synthase, preQ(0) synthase, or queuosine biosynthesis protein QueC. It catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)), as part of the biosynthesis pathway of queuosine (Q). Q is one of the most complex modifications occurring at the wobble position of tRNAs with GUN anticodons, and is implicated in a number of biological activities, including accuracy of decoding, virulence, and cellular differentiation. This subfamily belongs to the adenine nucleotide alpha hydrolase (AANH) superfamily that also includes other N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467499 [Multi-domain]  Cd Length: 208  Bit Score: 49.15  E-value: 9.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFM----KNWEEddgEEYCtaaadladAQAVCDKLGIELHTVN--FAAEYW 94
Cdd:cd01995     1 MKAVVLLSGGLDSTTLLYWALKEGYEVHALTFdygqRHAKE---ELEA--------AKLIAKLLGIEHKVIDlsFLGELG 69
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1631683330  95 -----DNVFELFLAEYKAGRT-----PNPDILcnkeikfkaFLEFA---AEDLGADYIATG 142
Cdd:cd01995    70 gssltDEGEEVPDGEYDEESIpstwvPNRNLI---------FLSIAaayAESLGASAIVIG 121
lysidine_TilS_N TIGR02432
tRNA(Ile)-lysidine synthetase, N-terminal domain; The only examples in which the wobble ...
22-143 3.64e-06

tRNA(Ile)-lysidine synthetase, N-terminal domain; The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 274129 [Multi-domain]  Cd Length: 189  Bit Score: 47.24  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  22 KVIVGMSGGVDSSVSAWLLLQQGYKVEGLF-------MKNWEEDDGEEYCtaaadladaQAVCDKLGIELHTVNFAAEYW 94
Cdd:TIGR02432   1 RILVAVSGGVDSMALLHLLLKLQPKIKIKLiaahvdhGLRPESDEEAEFV---------QQFCRKLNIPLEIKKVDVKAL 71
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1631683330  95 DNVFELFLAEykAGRtpnpdilcnkEIKFKAFLEfAAEDLGADYIATGH 143
Cdd:TIGR02432  72 AKGKKKNLEE--AAR----------EARYDFFEE-IAKKHGADYILTAH 107
PPase_ThiI cd01712
pyrophosphatase domain of thiamine biosynthesis protein ThiI; ThiI is required for thiazole ...
19-54 2.56e-05

pyrophosphatase domain of thiamine biosynthesis protein ThiI; ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. ThiI is also responsible for the 4-thiouridine (S4U) modification at position 8 in some prokaryotic tRNAs. ThiI contains a PP-loop pyrophosphatase domain which binds ATP and activates tRNA by adenylation. The PP-loop pyrophosphatase catalytic domain of ThiI proteins is always accompanied by a THUMP domain towards the N terminus. THUMP domains are predicted to bind RNA and are widespread in bacteria, archaea, and eukaryotes. The acronym was derived from the names of RNA-modifying enzymes in which this domain is found, namely, thiouridine synthases (ThiI), methylases, and archaeal pseudouridine synthases. ThiI proteins from gamma-proteobacteria and from archaea of the genus Thermoplasma also contain a C-terminal extension of approximately 100 amino acid residues which accepts sulfur in the form of a persulfide on a cysteine residue. This persulfide is responsible for a nucleophilic attack of the adenylated tRNA substrate, completing the sulfur insertion forming a disulfide-bridge between the rhodanese-like domain and a second cysteine residue located in the PP-loop domain. The reaction releases AMP and modified tRNA, and leaves the enzyme in an oxidized state. The disulfide is then reductively cleaved to complete the enzymatic cycle. The pyrophosphatase domain of ThiI belongs to the adenine nucleotide hydrolase (AANH) superfamily and it binds to adenosine nucleotide.


Pssm-ID: 467485 [Multi-domain]  Cd Length: 185  Bit Score: 44.46  E-value: 2.56e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1631683330  19 SQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKN 54
Cdd:cd01712     3 TSGKVLVLLSGGIDSPVAAWMMMKRGVEVDFLHFHS 38
AANH-like cd01986
adenine nucleotide alpha hydrolase (AANH)-like proteins; This group of adenine nucleotide ...
23-59 2.62e-05

adenine nucleotide alpha hydrolase (AANH)-like proteins; This group of adenine nucleotide alpha hydrolase (AANH)-like proteins includes N-type ATP PPases and ATP sulfurylases. The domain forms an alpha/beta/alpha fold which binds to adenosine nucleotide.


Pssm-ID: 467490 [Multi-domain]  Cd Length: 74  Bit Score: 42.05  E-value: 2.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1631683330  23 VIVGMSGGVDSSVSAWLLLQQGYK--VEGLFMKNWEEDD 59
Cdd:cd01986     1 VVVGYSGGKDSSVALHLASRLGRKaeVAVVHIDHGIGFK 39
CTU1-like cd01713
cytoplasmic tRNA 2-thiolation protein 1 and similar proteins; This subfamily includes human ...
22-143 2.99e-05

cytoplasmic tRNA 2-thiolation protein 1 and similar proteins; This subfamily includes human cytoplasmic tRNA 2-thiolation protein 1, also called cytosolic thiouridylase subunit 1 (CTU1), ATP-binding domain-containing protein 3 (ATPBD3), cancer-associated gene protein, or cytoplasmic tRNA adenylyltransferase 1. CTU1 plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). It directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. The CTU1-like subfamily belongs to the nucleotide alpha hydrolase (AANH) superfamily that includes N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to the adenosine group.


Pssm-ID: 467486  Cd Length: 208  Bit Score: 44.50  E-value: 2.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  22 KVIVGMSGGVDSSVSAWLLLQ----QGYKVEgLFMKNWEE------DDGEEYCTAaadladaqaVCDKLGIELHTVNFAA 91
Cdd:cd01713    20 RVAVGLSGGKDSTVLLYVLKElnkrHDYGVE-LIAVTIDEgikgyrDDSLEAARK---------LAEEYGIPLEIVSFED 89
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1631683330  92 EYWdnvFELFLAEYKAGRTPNPDILCNkeIKFKAFLEFAAEDLGADYIATGH 143
Cdd:cd01713    90 EFG---FTLDELIVGKGGKKNACTYCG--VFRRRALNRGARELGADKLATGH 136
NAD_synthase pfam02540
NAD synthase; NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is ...
21-200 4.53e-05

NAD synthase; NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.


Pssm-ID: 396888 [Multi-domain]  Cd Length: 241  Bit Score: 44.29  E-value: 4.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWL--LLQQGYKVEGLFM--KNWEEDDGEEyctaaadladAQAVCDKLGIELHTVNFAAEYwdn 96
Cdd:pfam02540  19 KGVVLGLSGGIDSSLVAYLavKALGKENVLALIMpsSQSSEEDVQD----------ALALAENLGIEYKTIDIKPIV--- 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  97 vfELFLAEYKagrtpnpdilcnkeikfKAFLEFAAEDLGADYIATGHYvrraDVNGKSQLLRGLDGNKDQSYFLYTLSHE 176
Cdd:pfam02540  86 --RAFSQLFQ-----------------DASEDFAKGNLKARIRMAILY----YIANKFNYLVLGTGNKSELAVGYFTKYG 142
                         170       180
                  ....*....|....*....|....
gi 1631683330 177 QIAQSLFPVGELEKPQVRKIAEDL 200
Cdd:pfam02540 143 DGACDIAPIGDLYKTQVYELARYL 166
TilS_N cd01992
N-terminal domain of tRNA(Ile)-lysidine synthase and similar proteins; tRNA(Ile)-lysidine ...
22-143 4.87e-04

N-terminal domain of tRNA(Ile)-lysidine synthase and similar proteins; tRNA(Ile)-lysidine synthase (EC 6.3.4.19), also called tRNA(Ile)-2-lysyl-cytidine synthase or tRNA(Ile)-lysidine synthetase, catalyzes the ligation of lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. This subfamily belongs to the adenine nucleotide alpha hydrolase superfamily that also includes N-type ATP PPases and ATP sulfurylases. It forms an alpha/beta/alpha fold which binds to adenosine group. This domain has a strongly conserved motif SGGXD at the N-terminus.


Pssm-ID: 467496 [Multi-domain]  Cd Length: 185  Bit Score: 40.66  E-value: 4.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  22 KVIVGMSGGVDSSVSAWLLLQQGYKVEGLF-------MKNWEEDDGEEYCtaaadladaQAVCDKLGIELHTVNFAAEYW 94
Cdd:cd01992     1 KILVAVSGGPDSMALLHLLKELRPKLGLKLvavhvdhGLREESAEEAQFV---------AKLCKKLGIPLHILTVTEAPK 71
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1631683330  95 DNV-FElflaeyKAGRtpnpdilcnkEIKFKAFLEfAAEDLGADYIATGH 143
Cdd:cd01992    72 SGGnLE------AAAR----------EARYAFLER-AAKEHGIDVLLTAH 104
guaA PRK00074
GMP synthase; Reviewed
21-40 7.65e-04

GMP synthase; Reviewed


Pssm-ID: 234614 [Multi-domain]  Cd Length: 511  Bit Score: 41.57  E-value: 7.65e-04
                          10        20
                  ....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLL 40
Cdd:PRK00074  216 KKVILGLSGGVDSSVAAVLL 235
ThiI pfam02568
Thiamine biosynthesis protein (ThiI); ThiI is required for thiazole synthesis, required for ...
19-54 1.55e-03

Thiamine biosynthesis protein (ThiI); ThiI is required for thiazole synthesis, required for thiamine biosynthesis.


Pssm-ID: 280691 [Multi-domain]  Cd Length: 197  Bit Score: 39.33  E-value: 1.55e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1631683330  19 SQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLFMKN 54
Cdd:pfam02568   2 TQGKVLALISGGIDSPVAAYMMMRRGCRVVALHFIN 37
NAD_synthase cd00553
NAD(+) synthase; NAD(+) synthase (EC 6.3.5.1), a homodimer, catalyzes the final step in the de ...
20-116 1.66e-03

NAD(+) synthase; NAD(+) synthase (EC 6.3.5.1), a homodimer, catalyzes the final step in the de novo nicotinamide adenine dinucleotide (NAD(+)) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD(+) occurs via a NAD-adenylate intermediate and requires ATP and Mg(2+). The intermediate is subsequently cleaved into NAD(+) and AMP. In many prokaryotes, such as Escherichia coli, NAD synthase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine. Interestingly, NAD(+) synthases in these prokaryotes, can also utilize ammonia as an amide source.


Pssm-ID: 467484 [Multi-domain]  Cd Length: 248  Bit Score: 39.85  E-value: 1.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  20 QKKVIVGMSGGVDSSVSAwLLLQQ---GYKVEGLFM---KNWEED--DGEEyctaaadladaqaVCDKLGIELHTVNFaa 91
Cdd:cd00553    23 AKGFVLGLSGGIDSAVVA-ALAVRalgAENVLALIMpsrYSSKETrdDAKA-------------LAENLGIEYRTIDI-- 86
                          90       100
                  ....*....|....*....|....*
gi 1631683330  92 eywDNVFELFLAEYKAGRTPNPDIL 116
Cdd:cd00553    87 ---DPIVDAFLKALEHAGGSEAEDL 108
QueC COG0603
7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and ...
19-50 1.81e-03

7-cyano-7-deazaguanine synthase (queuosine biosynthesis) [Translation, ribosomal structure and biogenesis]; 7-cyano-7-deazaguanine synthase (queuosine biosynthesis) is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440368 [Multi-domain]  Cd Length: 223  Bit Score: 39.37  E-value: 1.81e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1631683330  19 SQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGL 50
Cdd:COG0603     1 MMKKAVVLLSGGLDSTTCLAWALARGYEVYAL 32
GMP_synthase_C cd01997
C-terminal domain of GMP synthetase (glutamine-hydrolyzing); The C-terminal domain of GMP ...
21-42 2.25e-03

C-terminal domain of GMP synthetase (glutamine-hydrolyzing); The C-terminal domain of GMP synthetase (glutamine-hydrolyzing, EC 6.3.5.2) contains two subdomains: the ATP pyrophosphatase domain at the N-terminal and the dimerization domain at the C-terminal end. The ATP-PPase domain is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or PP-loop, at the end of the first-beta strand. GMP synthetase is a homodimer, but in some archaea, it is a heterodimer made up of ATP pyrophosphatase (ATP-PPase) and a GATase subunit. In eukaryotes and bacteria, the two catalytic units are encoded by a single gene producing a two-domain-type GMP with a GATase domain in the N-terminus and an ATP-PPase domain in the C-terminus.


Pssm-ID: 467501 [Multi-domain]  Cd Length: 311  Bit Score: 39.45  E-value: 2.25e-03
                          10        20
                  ....*....|....*....|..
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQ 42
Cdd:cd01997     8 KKVLCLVSGGVDSTVCAALLHK 29
COG1606 COG1606
ATP-utilizing enzyme, PP-loop superfamily [General function prediction only];
19-142 4.08e-03

ATP-utilizing enzyme, PP-loop superfamily [General function prediction only];


Pssm-ID: 441214 [Multi-domain]  Cd Length: 265  Bit Score: 38.55  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  19 SQKKVIVGMSGGVDSSVSAWLLLQQ-GYKV-----EGLFMKNWEEDDGEEyctaaadladaqaVCDKLGIELHTVNFAae 92
Cdd:COG1606    14 ELGSVLVAFSGGVDSTLLAKVAHDVlGDRVlavtaDSPSLPERELEEAKE-------------LAKEIGIRHEVIETD-- 78
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1631683330  93 ywdnvfELFLAEYKAgrtpNPD---ILCNKEIkFKAFLEFAAEdLGADYIATG 142
Cdd:COG1606    79 ------ELEDPEFVA----NPPdrcYHCKKEL-FSKLKELAKE-LGYAVVADG 119
nadE PRK00876
NAD(+) synthase;
23-83 6.04e-03

NAD(+) synthase;


Pssm-ID: 179150 [Multi-domain]  Cd Length: 326  Bit Score: 38.40  E-value: 6.04e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1631683330  23 VIVGMSGGVDSSVSAWLLLQQ--GYKVEGLFMKnwEEDDGEEyctaaaDLADAQAVCDKLGIE 83
Cdd:PRK00876   36 VVLGLSGGIDSSVTAALCVRAlgKERVYGLLMP--ERDSSPE------SLRLGREVAEHLGVE 90
ThiI COG0301
Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis) [Coenzyme ...
19-51 8.20e-03

Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis) [Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis]; Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis) is part of the Pathway/BioSystem: Thiamine biosynthesis


Pssm-ID: 440070 [Multi-domain]  Cd Length: 382  Bit Score: 38.15  E-value: 8.20e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1631683330  19 SQKKVIVGMSGGVDSSVSAWLLLQQGYKVEGLF 51
Cdd:COG0301   173 TQGKVLLLLSGGIDSPVAAYLMMKRGVEVEAVH 205
nadE TIGR00552
NAD+ synthetase; NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the ...
21-200 8.29e-03

NAD+ synthetase; NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]


Pssm-ID: 273132 [Multi-domain]  Cd Length: 250  Bit Score: 37.75  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  21 KKVIVGMSGGVDSSVSAWLLLQQGYK--VEGLFMK--NWEEDDGEEyctaaadladAQAVCDKLGIELHTVNFAAeywdn 96
Cdd:TIGR00552  23 KGVVLGLSGGIDSAVVAALCVEALGEqnHALLLPHsvQTPEQDVQD----------ALALAEPLGINYKNIDIAP----- 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1631683330  97 VFELFLAEYKAGrTPNPDILCNKEIKFK---AFLEFAAEDLGADYIATGHyvrradvngKSQLLRGldgnkdqsYFlyTL 173
Cdd:TIGR00552  88 IAASFQAQTETG-DELSDFLAKGNLKARlrmAALYAIANKHNLLVLGTGN---------KSELMLG--------YF--TK 147
                         170       180
                  ....*....|....*....|....*..
gi 1631683330 174 sHEQIAQSLFPVGELEKPQVRKIAEDL 200
Cdd:TIGR00552 148 -YGDGGCDIAPIGDLFKTQVYELAKRL 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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