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Conserved domains on  [gi|1630674500|gb|TJQ19230|]
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DNA-binding protein [Escherichia coli]

Protein Classification

excisionase family protein( domain architecture ID 10536167)

excisionase family protein is a DUF1233 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1233 pfam06806
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 1-69 3.10e-31

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


:

Pssm-ID: 399649  Cd Length: 70  Bit Score: 103.69  E-value: 3.10e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1630674500  1 MIVSPGKWVSEEQLIALKGIKKGTLKKAREKSFMEGREYKHVAHDGMPWDNSPCFYNLEEIDRWIERQA 69
Cdd:pfam06806  2 IQIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGNPKLNSPCLYNIPAINQWIEAQP 70
 
Name Accession Description Interval E-value
DUF1233 pfam06806
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 1-69 3.10e-31

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


Pssm-ID: 399649  Cd Length: 70  Bit Score: 103.69  E-value: 3.10e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1630674500  1 MIVSPGKWVSEEQLIALKGIKKGTLKKAREKSFMEGREYKHVAHDGMPWDNSPCFYNLEEIDRWIERQA 69
Cdd:pfam06806  2 IQIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGNPKLNSPCLYNIPAINQWIEAQP 70
 
Name Accession Description Interval E-value
DUF1233 pfam06806
Putative excisionase (DUF1233); This family consists of several putative phage excisionase ...
 1-69 3.10e-31

Putative excisionase (DUF1233); This family consists of several putative phage excisionase proteins of around 80 residues in length.


Pssm-ID: 399649  Cd Length: 70  Bit Score: 103.69  E-value: 3.10e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1630674500  1 MIVSPGKWVSEEQLIALKGIKKGTLKKAREKSFMEGREYKHVAHDGMPWDNSPCFYNLEEIDRWIERQA 69
Cdd:pfam06806  2 IQIFPSKWVSENVLMAVTGLKPGTIKNARKKSWMEGREYKHVSPDGNPKLNSPCLYNIPAINQWIEAQP 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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