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Conserved domains on  [gi|1629222987|gb|TJC05323|]
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putative selenium-dependent hydroxylase accessory protein YqeC [Escherichia coli]

Protein Classification

putative selenium-dependent hydroxylase accessory protein YqeC( domain architecture ID 10022235)

putative selenium-dependent hydroxylase accessory protein YqeC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TIGR03172 TIGR03172
probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein ...
 22-234 8.44e-99

probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. [Unknown function, General]


:

Pssm-ID: 274467  Cd Length: 210  Bit Score: 287.24  E-value: 8.44e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  22 VISVVGAGGKTSLLFWLAELLQASGRRVLITTTTHMFMPTSHWPVVfCRDPAMLPHASLTSPISFCFHSWKANQGKVQGF 101
Cdd:TIGR03172   1 IISIVGAGGKTTLMFALARELRKEGKPVLVTTTTHIFPPPAEYFVL-YEPDAAAITAALKQPGLVCAGSPAGNKGKLTGF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987 102 TPEAIDALVQRPecDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRWSQFADITGLTPDA 181
Cdd:TIGR03172  80 SPEVLDALADIA--DYVLIEADGAKRLPLKAPADHEPVIPKQTTHVIGVAGLSALGRPIDEVFCHRPELFAAILGKSPGD 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1629222987 182 TLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQCENAIAQSELLQPLQQH 234
Cdd:TIGR03172 158 PLTPEDIAALIAHPKGGFKNVPPEARFIILLNQADTEERIQAAEEIAKLLARR 210
 
Name Accession Description Interval E-value
TIGR03172 TIGR03172
probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein ...
 22-234 8.44e-99

probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. [Unknown function, General]


Pssm-ID: 274467  Cd Length: 210  Bit Score: 287.24  E-value: 8.44e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  22 VISVVGAGGKTSLLFWLAELLQASGRRVLITTTTHMFMPTSHWPVVfCRDPAMLPHASLTSPISFCFHSWKANQGKVQGF 101
Cdd:TIGR03172   1 IISIVGAGGKTTLMFALARELRKEGKPVLVTTTTHIFPPPAEYFVL-YEPDAAAITAALKQPGLVCAGSPAGNKGKLTGF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987 102 TPEAIDALVQRPecDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRWSQFADITGLTPDA 181
Cdd:TIGR03172  80 SPEVLDALADIA--DYVLIEADGAKRLPLKAPADHEPVIPKQTTHVIGVAGLSALGRPIDEVFCHRPELFAAILGKSPGD 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1629222987 182 TLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQCENAIAQSELLQPLQQH 234
Cdd:TIGR03172 158 PLTPEDIAALIAHPKGGFKNVPPEARFIILLNQADTEERIQAAEEIAKLLARR 210
YqeC pfam19842
YqeC protein; This entry includes the E. coli YqeC protein. This protein belongs to the P-loop ...
 23-168 4.62e-53

YqeC protein; This entry includes the E. coli YqeC protein. This protein belongs to the P-loop superfamily.


Pssm-ID: 466205  Cd Length: 135  Bit Score: 168.10  E-value: 4.62e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  23 ISVVGAGGKTSLLFWLAELLQASGRRVLITTTTHMFMPTSHWPVVFCRDPAMLphasltspisfcfhSWKANQGKV---- 98
Cdd:pfam19842   1 ISIVGAGGKTTLLFRLAKELKKRGKRVLVTTTTKIFPPEAEEYDLILIEDVVA--------------GLPIEEGKLaglp 66

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  99 QGFTPEAIDALVQRpeCDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRW 168
Cdd:pfam19842  67 SGLSPELLDELAKL--ADYILIEADGSRGKPLKAPAEHEPVIPEETDLVIGVIGLDALGKPLNEEIVHRP 134
 
Name Accession Description Interval E-value
TIGR03172 TIGR03172
probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein ...
 22-234 8.44e-99

probable selenium-dependent hydroxylase accessory protein YqeC; This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. [Unknown function, General]


Pssm-ID: 274467  Cd Length: 210  Bit Score: 287.24  E-value: 8.44e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  22 VISVVGAGGKTSLLFWLAELLQASGRRVLITTTTHMFMPTSHWPVVfCRDPAMLPHASLTSPISFCFHSWKANQGKVQGF 101
Cdd:TIGR03172   1 IISIVGAGGKTTLMFALARELRKEGKPVLVTTTTHIFPPPAEYFVL-YEPDAAAITAALKQPGLVCAGSPAGNKGKLTGF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987 102 TPEAIDALVQRPecDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRWSQFADITGLTPDA 181
Cdd:TIGR03172  80 SPEVLDALADIA--DYVLIEADGAKRLPLKAPADHEPVIPKQTTHVIGVAGLSALGRPIDEVFCHRPELFAAILGKSPGD 157

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1629222987 182 TLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQCENAIAQSELLQPLQQH 234
Cdd:TIGR03172 158 PLTPEDIAALIAHPKGGFKNVPPEARFIILLNQADTEERIQAAEEIAKLLARR 210
YqeC pfam19842
YqeC protein; This entry includes the E. coli YqeC protein. This protein belongs to the P-loop ...
 23-168 4.62e-53

YqeC protein; This entry includes the E. coli YqeC protein. This protein belongs to the P-loop superfamily.


Pssm-ID: 466205  Cd Length: 135  Bit Score: 168.10  E-value: 4.62e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  23 ISVVGAGGKTSLLFWLAELLQASGRRVLITTTTHMFMPTSHWPVVFCRDPAMLphasltspisfcfhSWKANQGKV---- 98
Cdd:pfam19842   1 ISIVGAGGKTTLLFRLAKELKKRGKRVLVTTTTKIFPPEAEEYDLILIEDVVA--------------GLPIEEGKLaglp 66

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1629222987  99 QGFTPEAIDALVQRpeCDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKVSTENVHRW 168
Cdd:pfam19842  67 SGLSPELLDELAKL--ADYILIEADGSRGKPLKAPAEHEPVIPEETDLVIGVIGLDALGKPLNEEIVHRP 134
lpxK TIGR00682
tetraacyldisaccharide 4'-kinase; Also called lipid-A 4'-kinase. This essential gene encodes an ...
 9-53 9.99e-04

tetraacyldisaccharide 4'-kinase; Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 273216  Cd Length: 311  Bit Score: 39.76  E-value: 9.99e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1629222987   9 ALVIDLGAQK-----RPTVIS---VVGAGGKTSLLFWLAELLQASGRRVLITT 53
Cdd:TIGR00682  13 RFLYDLGLKKawrapVPVVIVgnlSVGGNGKTPVVVWLAELLKDRGVRVGVLS 65
LpxK pfam02606
Tetraacyldisaccharide-1-P 4'-kinase; This family consists of tetraacyldisaccharide-1-P 4 ...
 22-51 5.77e-03

Tetraacyldisaccharide-1-P 4'-kinase; This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyzes the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <=> ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.


Pssm-ID: 460616  Cd Length: 319  Bit Score: 37.55  E-value: 5.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1629222987  22 VISV----VGAGGKTSLLFWLAELLQASGRRVLI 51
Cdd:pfam02606  37 VIVVgnitVGGTGKTPLVIALAKLLRARGLRPGV 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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