NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1623480043|gb|THP15129|]
View 

outer membrane protein assembly factor BamE [Klebsiella pneumoniae]

Protein Classification

outer membrane protein assembly factor BamE( domain architecture ID 10006784)

outer membrane protein assembly factor BamE is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-99 7.82e-14

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442157  Cd Length: 128  Bit Score: 63.13  E-value: 7.82e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623480043   1 MKKIILALFLGASSIAITACAPSEQKIDYNQ-----KSML--LSLGMTKNDVMQIMGAPRRTDVNAEReRWIYWNKTRYA 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYKIDIQQgnvvtQEDLaqLKPGMTKEQVRYLLGTPSLTDTFHPN-RWYYVYSFRRG 79

                          90       100
                  ....*....|....*....|....*..
gi 1623480043  74 YTIVDNEQLAndrlvVTFVN-GKVTKW 99
Cdd:COG2913    80 GKEVEQRVLA-----VYFDDdGRVARI 101
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-99 7.82e-14

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 63.13  E-value: 7.82e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623480043   1 MKKIILALFLGASSIAITACAPSEQKIDYNQ-----KSML--LSLGMTKNDVMQIMGAPRRTDVNAEReRWIYWNKTRYA 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYKIDIQQgnvvtQEDLaqLKPGMTKEQVRYLLGTPSLTDTFHPN-RWYYVYSFRRG 79

                          90       100
                  ....*....|....*....|....*..
gi 1623480043  74 YTIVDNEQLAndrlvVTFVN-GKVTKW 99
Cdd:COG2913    80 GKEVEQRVLA-----VYFDDdGRVARI 101
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 36-99 3.65e-03

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 33.70  E-value: 3.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1623480043  36 LSLGMTKNDVMQIMGAPRRTDVNAErERWIYWNKTRYAYtiVDNEQlanDRLVVTFVNGKVTKW 99
Cdd:pfam04355  11 LKPGMTREQVRYLLGTPSLVDTFDD-DRWYYVYNFRRGG--GAVEQ---QVLTVYFDDDGLVRN 68
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-99 7.82e-14

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 63.13  E-value: 7.82e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1623480043   1 MKKIILALFLGASSIAITACAPSEQKIDYNQ-----KSML--LSLGMTKNDVMQIMGAPRRTDVNAEReRWIYWNKTRYA 73
Cdd:COG2913     1 MRKLRLLLLALLLALLLAGCSSFVYKIDIQQgnvvtQEDLaqLKPGMTKEQVRYLLGTPSLTDTFHPN-RWYYVYSFRRG 79

                          90       100
                  ....*....|....*....|....*..
gi 1623480043  74 YTIVDNEQLAndrlvVTFVN-GKVTKW 99
Cdd:COG2913    80 GKEVEQRVLA-----VYFDDdGRVARI 101
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 36-99 3.65e-03

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 33.70  E-value: 3.65e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1623480043  36 LSLGMTKNDVMQIMGAPRRTDVNAErERWIYWNKTRYAYtiVDNEQlanDRLVVTFVNGKVTKW 99
Cdd:pfam04355  11 LKPGMTREQVRYLLGTPSLVDTFDD-DRWYYVYNFRRGG--GAVEQ---QVLTVYFDDDGLVRN 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH