PAS domain-containing protein (plasmid) [Escherichia coli]
PAS domain-containing protein( domain architecture ID 12012733)
PAS domain-containing protein binds ligand(s) and may act as sensors for light and oxygen in signal transduction; similar to Escherichia coli protein TraJ
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PAS | pfam00989 | PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
18-114 | 1.25e-12 | |||
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). : Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 62.05 E-value: 1.25e-12
|
|||||||
Name | Accession | Description | Interval | E-value | ||||
PAS | pfam00989 | PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
18-114 | 1.25e-12 | ||||
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 62.05 E-value: 1.25e-12
|
||||||||
PRK13719 | PRK13719 | conjugal transfer transcriptional regulator TraJ; Provisional |
17-185 | 8.09e-07 | ||||
conjugal transfer transcriptional regulator TraJ; Provisional Pssm-ID: 237479 Cd Length: 217 Bit Score: 48.19 E-value: 8.09e-07
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
PAS | pfam00989 | PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
18-114 | 1.25e-12 | ||||
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 62.05 E-value: 1.25e-12
|
||||||||
PRK13719 | PRK13719 | conjugal transfer transcriptional regulator TraJ; Provisional |
17-185 | 8.09e-07 | ||||
conjugal transfer transcriptional regulator TraJ; Provisional Pssm-ID: 237479 Cd Length: 217 Bit Score: 48.19 E-value: 8.09e-07
|
||||||||
PAS_8 | pfam13188 | PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
19-82 | 2.18e-04 | ||||
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 38.30 E-value: 2.18e-04
|
||||||||
Blast search parameters | ||||
|