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Conserved domains on  [gi|1599427744|gb|TEN22023|]
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peptidoglycan-associated lipoprotein [Pseudomonas aeruginosa]

Protein Classification

peptidoglycan-associated lipoprotein( domain architecture ID 10798633)

peptidoglycan-associated lipoprotein is part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity

Gene Ontology:  GO:0051301|GO:0009279
SCOP:  4001470

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 66-167 5.05e-60

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


:

Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 181.60  E-value: 5.05e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  66 TFYFEYDSSDLKPEAMRALDVHAKDL-KGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLkKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|...
gi 1599427744 145 KERPVATGHDEQSWAQNRRVELK 167
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLV 103
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 66-167 5.05e-60

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 181.60  E-value: 5.05e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  66 TFYFEYDSSDLKPEAMRALDVHAKDL-KGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLkKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|...
gi 1599427744 145 KERPVATGHDEQSWAQNRRVELK 167
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLV 103
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 64-167 1.50e-43

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 139.61  E-value: 1.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  64 ITTFYFEYDSSDLKPEAMRALDVHAKDLKG-SGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVS 142
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKnPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*
gi 1599427744 143 YGKERPVATGHDEQSWAQNRRVELK 167
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 25-167 3.72e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 144.93  E-value: 3.72e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  25 KGGDASGEGANGGVDPNAGYGANSGAVDGSLSDEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKG-SGQRVVLEGH 103
Cdd:COG2885   147 AAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEnPDLRIEIEGH 226

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1599427744 104 TDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELK 167
Cdd:COG2885   227 TDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
22-166 5.14e-37

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 125.37  E-value: 5.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  22 CSS-KGGDASGEGANGGVDPNAGYGANSGAVDgslSDEAA------LRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGS 94
Cdd:PRK10802   22 CSSnKNASNDQSEGMLGAGTGMDANGGNGNMS---SEEQArlqmqqLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSN 98

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1599427744  95 -GQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK10802   99 pSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVL 171
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 69-151 6.65e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.05  E-value: 6.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQR--VVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKE 146
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ....*
gi 1599427744 147 RPVAT 151
Cdd:pfam00691  81 KPITD 85
 
Name Accession Description Interval E-value
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 66-167 5.05e-60

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 181.60  E-value: 5.05e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  66 TFYFEYDSSDLKPEAMRALDVHAKDL-KGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLkKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|...
gi 1599427744 145 KERPVATGHDEQSWAQNRRVELK 167
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLV 103
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 64-167 1.50e-43

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 139.61  E-value: 1.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  64 ITTFYFEYDSSDLKPEAMRALDVHAKDLKG-SGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVS 142
Cdd:cd07185     1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKnPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                          90       100
                  ....*....|....*....|....*
gi 1599427744 143 YGKERPVATGHDEQSWAQNRRVELK 167
Cdd:cd07185    81 YGESRPIASNDTEEGRAKNRRVEIV 105
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 25-167 3.72e-43

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 144.93  E-value: 3.72e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  25 KGGDASGEGANGGVDPNAGYGANSGAVDGSLSDEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKG-SGQRVVLEGH 103
Cdd:COG2885   147 AAAKALGDSAAAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEnPDLRIEIEGH 226

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1599427744 104 TDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELK 167
Cdd:COG2885   227 TDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIV 290
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
22-166 5.14e-37

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 125.37  E-value: 5.14e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  22 CSS-KGGDASGEGANGGVDPNAGYGANSGAVDgslSDEAA------LRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGS 94
Cdd:PRK10802   22 CSSnKNASNDQSEGMLGAGTGMDANGGNGNMS---SEEQArlqmqqLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSN 98

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1599427744  95 -GQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK10802   99 pSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVL 171
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 69-151 6.65e-27

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 97.05  E-value: 6.65e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQR--VVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKE 146
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80


                  ....*
gi 1599427744 147 RPVAT 151
Cdd:pfam00691  81 KPITD 85
MotB COG1360
Flagellar motor protein MotB [Cell motility];
69-167 8.26e-23

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 88.75  E-value: 8.26e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDER--GTREY--NMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:COG1360    63 FDSGSAELTPEGRELLDKIAAVLAEVPNRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAVGYG 142

                          90       100
                  ....*....|....*....|...
gi 1599427744 145 KERPVATGHDEQSWAQNRRVELK 167
Cdd:COG1360   143 DTRPLAPNDTPEGRARNRRVEIV 165
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 53-167 4.06e-20

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 83.70  E-value: 4.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  53 GSLSDEAALRaiTTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQ-RVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQ 131
Cdd:TIGR03789 129 QQLLEELALG--MNVQFRTGSSDIEPHFQPQLDEVATLMKQSPElKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQ 206

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1599427744 132 GVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELK 167
Cdd:TIGR03789 207 GVDEARLTTQAFGESAPLKDEQESESDFFDRRVTLT 242
PRK10510 PRK10510
OmpA family lipoprotein;
69-166 2.73e-13

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 64.90  E-value: 2.73e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQ-RVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKER 147
Cdd:PRK10510  116 FDSSSATLKPAGANTLTGVAMVLKEYPKtAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPAN 195

                          90
                  ....*....|....*....
gi 1599427744 148 PVATGHDEQSWAQNRRVEL 166
Cdd:PRK10510  196 PIASNSTAEGKAQNRRVEI 214
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 69-166 9.33e-13

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 64.26  E-value: 9.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDER--GTREY--NMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:PRK09038  137 FGSGDAMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGYG 216

                          90       100
                  ....*....|....*....|..
gi 1599427744 145 KERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK09038  217 EFQPVADNDTAEGRARNRRVVL 238
PRK10808 PRK10808
outer membrane protein A; Reviewed
 69-167 3.05e-11

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 60.47  E-value: 3.05e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALD--------VHAKDlkgsGQRVVLeGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLEL 140
Cdd:PRK10808  228 FNFNKATLKPEGQQALDqlysqlsnLDPKD----GSVVVL-GYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISA 302

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1599427744 141 VSYGKERPVaTGH--DEQS--------WAQNRRVELK 167
Cdd:PRK10808  303 RGMGKSNPV-TGNtcDNVKpraalidcLAPDRRVEIE 338
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 57-165 1.23e-10

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 56.16  E-value: 1.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  57 DEAALRAITTF----YFEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERG--TREY--NMALGERRAKAVQRYL 128
Cdd:TIGR03350  18 DEDGDRSVVRLrgdeLFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPirTARFpsNWHLSEARAKAVADVL 97

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1599427744 129 VLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVE 165
Cdd:TIGR03350  98 AQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVE 134
PRK09039 PRK09039
peptidoglycan -binding protein;
97-167 4.02e-10

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 56.90  E-value: 4.02e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1599427744  97 RVvlEGHTDER---GTREY--NMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELK 167
Cdd:PRK09039  266 RV--DGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRRIELK 339
PRK09967 PRK09967
OmpA family protein;
21-164 4.42e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 55.37  E-value: 4.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  21 GCSSKGGDASGEGanggVDPNAGYGANSGAVDGSL--SDeaalraitTFYFEYDSSDLKPEAMRALDVHAKDLKGSG-QR 97
Cdd:PRK09967   18 GCQSPQGKFTPEQ----VAAMQSYGFTESAGDWSLglSD--------AILFAKNDYKLLPESQQQIQTMAAKLASTGlTH 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1599427744  98 VVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSP-AQLELVSYGKERPVATGHDEQSWAQNRRV 164
Cdd:PRK09967   86 ARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPrSNLTTQGLGKKYPIASNKTAQGRAENRRV 153
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 64-164 2.28e-09

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 54.30  E-value: 2.28e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  64 ITTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTRE----YNMALGERRAKAVQRYLV-LQGVSPAQL 138
Cdd:PRK06742  114 VDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNdkfpSNWELSSARAANMIHHLIeVYNVDDKRL 193

                          90       100
                  ....*....|....*....|....*.
gi 1599427744 139 ELVSYGKERPVATGHDEQSWAQNRRV 164
Cdd:PRK06742  194 AAVGYADTKPVVPNDSPQNWEKNRRV 219
PRK09040 PRK09040
hypothetical protein; Provisional
 69-166 4.54e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 53.10  E-value: 4.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGS-GQR---VVLEGHTDER----GTREY--NMALGERRAKAVQRYLVLQGVSPAQL 138
Cdd:PRK09040   92 FALNSDQLQPEGRELLKSLAGPLAAYlRARdeiLMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPASSV 171

                          90       100
                  ....*....|....*....|....*...
gi 1599427744 139 ELVSYGKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK09040  172 FAAAFGSEQPVASNADDEGRAKNRRVEI 199
PRK06925 PRK06925
flagellar motor protein MotB;
69-166 4.63e-09

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 53.61  E-value: 4.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTREY----NMALGERRAKAVQRYLV-LQGVSPAQLELVSY 143
Cdd:PRK06925  122 FETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTsKEKLDSSRFIAVGY 201

                          90       100
                  ....*....|....*....|...
gi 1599427744 144 GKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK06925  202 ADTKPVVPNTTEENMQENRRVEI 224
motB PRK06667
flagellar motor protein MotB; Validated
 68-166 2.28e-08

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 51.72  E-value: 2.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  68 YFEYDSSDLK----PEAMRALDVHAKDLKGSGQRVVLEGHTDERGT---REY--NMALGERRAKAVQRYLVLQGV-SPAQ 137
Cdd:PRK06667  128 FFYPGSAEVKleenRETLQKIASFIGFLDLAGRNFRIEGHTDNVDVnpeGPWksNWELSGARAVNMLEYILNYGDqSESW 207

                          90       100
                  ....*....|....*....|....*....
gi 1599427744 138 LELVSYGKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK06667  208 FQVSGFAGSRPLATEDTPEGRAYNRRIDI 236
PRK08126 PRK08126
hypothetical protein; Provisional
 53-166 2.93e-08

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 52.00  E-value: 2.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  53 GSLS-DEAALRAITTF----YFEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDER--GTREY--NMALGERRAKA 123
Cdd:PRK08126  306 GTLSvDEDARHSSVVFrgdaMFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQpiRSAQFasNLVLSEKRAAQ 385

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1599427744 124 VQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK08126  386 VAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEI 428
motB PRK08457
flagellar motor protein MotB; Reviewed
 98-165 1.38e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 49.33  E-value: 1.38e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1599427744  98 VVLEGHTDE---RGTR-EYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVE 165
Cdd:PRK08457  158 INVRGYTDNsplNKSRyKDHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
motB PRK08944
flagellar motor protein MotB; Reviewed
 69-165 6.90e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 44.62  E-value: 6.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTR--EY--NMALGERRAKAVQRYLVL-QGVSPAQLELVSY 143
Cdd:PRK08944  183 FPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELLKvKGFDPQRLKVVGM 262

                          90       100
                  ....*....|....*....|..
gi 1599427744 144 GKERPVATGHDEQSWAQNRRVE 165
Cdd:PRK08944  263 ADTQPLVPNDTAENRARNRRVE 284
PRK07033 PRK07033
DotU family type VI secretion system protein;
69-166 1.44e-04

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 41.19  E-value: 1.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1599427744  69 FEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTREY----NMALGERRAKAVQRYLVLQGVSPAQLELVSYG 144
Cdd:PRK07033  318 FASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPERVTAEGRG 397

                          90       100
                  ....*....|....*....|..
gi 1599427744 145 KERPVATGHDEQSWAQNRRVEL 166
Cdd:PRK07033  398 DSDPVAPNDSAENRARNRRVEI 419
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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