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Conserved domains on  [gi|1589197025|gb|TCU60178|]
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anaerobic sulfite reductase subunit B [Longicatena caecimuris]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
sulfite_red_B super family cl31266
sulfite reductase, subunit B; Members of this protein family include the B subunit, one of ...
3-266 2.93e-106

sulfite reductase, subunit B; Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. [Central intermediary metabolism, Sulfur metabolism]


The actual alignment was detected with superfamily member TIGR02911:

Pssm-ID: 131957 [Multi-domain]  Cd Length: 261  Bit Score: 308.64  E-value: 2.93e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKHRILDIIEETDLESTFVVEFpNASIRHGQFFEISLPKIGEAPISVSSFTDSTVEFTIRRVGKLTNVIFDLAPG 82
Cdd:TIGR02911   1 NSYLPFKSEILEIIKHTDIEYTFRMSY-DGPVKPGQFFEVSLPKYGEAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  83 DDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFh 162
Cdd:TIGR02911  80 DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKGNINL- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 163 tTLTLDNGQKE-GFKEGFAMNYVKDIPFQEWgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGH 241
Cdd:TIGR02911 159 -TLTLDEAEEDyKGNIGLVTKYIPELTLKDI-EEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGH 236
                         250       260
                  ....*....|....*....|....*
gi 1589197025 242 CKINETYVCLEGPVFPYTKAKTLMD 266
Cdd:TIGR02911 237 CKIDDVYVCLDGPVFNYTKAKRLID 261
 
Name Accession Description Interval E-value
sulfite_red_B TIGR02911
sulfite reductase, subunit B; Members of this protein family include the B subunit, one of ...
3-266 2.93e-106

sulfite reductase, subunit B; Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 131957 [Multi-domain]  Cd Length: 261  Bit Score: 308.64  E-value: 2.93e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKHRILDIIEETDLESTFVVEFpNASIRHGQFFEISLPKIGEAPISVSSFTDSTVEFTIRRVGKLTNVIFDLAPG 82
Cdd:TIGR02911   1 NSYLPFKSEILEIIKHTDIEYTFRMSY-DGPVKPGQFFEVSLPKYGEAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  83 DDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFh 162
Cdd:TIGR02911  80 DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKGNINL- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 163 tTLTLDNGQKE-GFKEGFAMNYVKDIPFQEWgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGH 241
Cdd:TIGR02911 159 -TLTLDEAEEDyKGNIGLVTKYIPELTLKDI-EEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGH 236
                         250       260
                  ....*....|....*....|....*
gi 1589197025 242 CKINETYVCLEGPVFPYTKAKTLMD 266
Cdd:TIGR02911 237 CKIDDVYVCLDGPVFNYTKAKRLID 261
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
12-258 6.76e-100

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 291.82  E-value: 6.76e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  12 ILDIIEETDLESTFVVEFPN-----ASIRHGQFFEISLPKIGEAPISVSSFT--DSTVEFTIRRVGKLTNVIFDLAPGDD 84
Cdd:cd06221     1 IVEVVDETEDIKTFTLRLEDddeelFTFKPGQFVMLSLPGVGEAPISISSDPtrRGPLELTIRRVGRVTEALHELKPGDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  85 LYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFHTT 164
Cdd:cd06221    81 VGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKRSDVEVI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 165 LTLDNGQ-KEGFKEGFAMNYVKDIPFQEwgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGHCK 243
Cdd:cd06221   161 LTVDRAEeGWTGNVGLVTDLLPELTLDP--DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQ 238
                         250
                  ....*....|....*
gi 1589197025 244 INETYVCLEGPVFPY 258
Cdd:cd06221   239 IGPKYVCKDGPVFSY 253
Mcr1 COG0543
NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]; ...
11-262 1.01e-75

NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion];


Pssm-ID: 440309 [Multi-domain]  Cd Length: 247  Bit Score: 230.52  E-value: 1.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEFPNASIRH--GQFFEISLP-KIGEAPISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDL 85
Cdd:COG0543     1 KVVSVERLAPDVYLLRLEAPLIALKFkpGQFVMLRVPgDGLRRPFSIASAprEDGTIELHIRVVGKGTRALAELKPGDEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  86 YIRGPYGNGFPLESFkNKHVVVIAGGTGVAPVRSTLKHFLHHPqdcKDVYAIAGFRDPSHTLFENDLKAFVNaphFHTTL 165
Cdd:COG0543    81 DVRGPLGNGFPLEDS-GRPVLLVAGGTGLAPLRSLAEALLARG---RRVTLYLGARTPEDLYLLDELEALAD---FRVVV 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 166 TLDNGqKEGFKeGFAMNYVKDIPfqEWGEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGHCKIN 245
Cdd:COG0543   154 TTDDG-WYGRK-GFVTDALKELL--AEDSGDDVYACGPPPMMKAVAELLLERGVPPERIYVSLERRMACGIGMCGGCVVP 229
                         250
                  ....*....|....*..
gi 1589197025 246 ETYVCLEGPVFPYTKAK 262
Cdd:COG0543   230 VGGGCKDGPVFDAAEVD 246
PRK08345 PRK08345
cytochrome-c3 hydrogenase subunit gamma; Provisional
3-258 3.01e-59

cytochrome-c3 hydrogenase subunit gamma; Provisional


Pssm-ID: 236247 [Multi-domain]  Cd Length: 289  Bit Score: 189.63  E-value: 3.01e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKHRILDIIEETDLESTFVVEFPNASI------RHGQFFEISLPKIGEAPISV--SSFTDSTVEFTIRRVGKLTN 74
Cdd:PRK08345    1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELaesftfKPGQFVQVTIPGVGEVPISIcsSPTRKGFFELCIRRAGRVTT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  75 VIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDL-K 153
Cdd:PRK08345   81 VIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFYDELiK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 154 AFVNAPHF--HTTLTLD------NGQKEGFKEGFAMNYVKDIPFQEWG--EDYAVIIVGPPVMMKFTAQECMKYGVQEEH 223
Cdd:PRK08345  161 DLAEAENVkiIQSVTRDpewpgcHGLPQGFIERVCKGVVTDLFREANTdpKNTYAAICGPPVMYKFVFKELINRGYRPER 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1589197025 224 IYVSFERKMSCALGKCGHCKINET----YVCLEGPVFPY 258
Cdd:PRK08345  241 IYVTLERRMRCGIGKCGHCIVGTStsikYVCKDGPVFTY 279
NAD_binding_1 pfam00175
Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have ...
108-212 9.30e-13

Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.


Pssm-ID: 425503 [Multi-domain]  Cd Length: 109  Bit Score: 63.05  E-value: 9.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 108 IAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNA--PHFHTTLTLDNGQKEgfKEGFAMnYVK 185
Cdd:pfam00175   2 IAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKhpGRLTVVYVVSRPEAG--WTGGKG-RVQ 78
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1589197025 186 DIPFQEW----GEDYAVIIVGPPVMMKFTAQ 212
Cdd:pfam00175  79 DALLEDHlslpDEETHVYVCGPPGMIKAVRK 109
 
Name Accession Description Interval E-value
sulfite_red_B TIGR02911
sulfite reductase, subunit B; Members of this protein family include the B subunit, one of ...
3-266 2.93e-106

sulfite reductase, subunit B; Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. [Central intermediary metabolism, Sulfur metabolism]


Pssm-ID: 131957 [Multi-domain]  Cd Length: 261  Bit Score: 308.64  E-value: 2.93e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKHRILDIIEETDLESTFVVEFpNASIRHGQFFEISLPKIGEAPISVSSFTDSTVEFTIRRVGKLTNVIFDLAPG 82
Cdd:TIGR02911   1 NSYLPFKSEILEIIKHTDIEYTFRMSY-DGPVKPGQFFEVSLPKYGEAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  83 DDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFh 162
Cdd:TIGR02911  80 DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKGNINL- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 163 tTLTLDNGQKE-GFKEGFAMNYVKDIPFQEWgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGH 241
Cdd:TIGR02911 159 -TLTLDEAEEDyKGNIGLVTKYIPELTLKDI-EEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGH 236
                         250       260
                  ....*....|....*....|....*
gi 1589197025 242 CKINETYVCLEGPVFPYTKAKTLMD 266
Cdd:TIGR02911 237 CKIDDVYVCLDGPVFNYTKAKRLID 261
sulfite_reductase_like cd06221
Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural ...
12-258 6.76e-100

Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.


Pssm-ID: 99817 [Multi-domain]  Cd Length: 253  Bit Score: 291.82  E-value: 6.76e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  12 ILDIIEETDLESTFVVEFPN-----ASIRHGQFFEISLPKIGEAPISVSSFT--DSTVEFTIRRVGKLTNVIFDLAPGDD 84
Cdd:cd06221     1 IVEVVDETEDIKTFTLRLEDddeelFTFKPGQFVMLSLPGVGEAPISISSDPtrRGPLELTIRRVGRVTEALHELKPGDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  85 LYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFHTT 164
Cdd:cd06221    81 VGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAKRSDVEVI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 165 LTLDNGQ-KEGFKEGFAMNYVKDIPFQEwgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGHCK 243
Cdd:cd06221   161 LTVDRAEeGWTGNVGLVTDLLPELTLDP--DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQ 238
                         250
                  ....*....|....*
gi 1589197025 244 INETYVCLEGPVFPY 258
Cdd:cd06221   239 IGPKYVCKDGPVFSY 253
Mcr1 COG0543
NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion]; ...
11-262 1.01e-75

NAD(P)H-flavin reductase [Coenzyme transport and metabolism, Energy production and conversion];


Pssm-ID: 440309 [Multi-domain]  Cd Length: 247  Bit Score: 230.52  E-value: 1.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEFPNASIRH--GQFFEISLP-KIGEAPISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDL 85
Cdd:COG0543     1 KVVSVERLAPDVYLLRLEAPLIALKFkpGQFVMLRVPgDGLRRPFSIASAprEDGTIELHIRVVGKGTRALAELKPGDEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  86 YIRGPYGNGFPLESFkNKHVVVIAGGTGVAPVRSTLKHFLHHPqdcKDVYAIAGFRDPSHTLFENDLKAFVNaphFHTTL 165
Cdd:COG0543    81 DVRGPLGNGFPLEDS-GRPVLLVAGGTGLAPLRSLAEALLARG---RRVTLYLGARTPEDLYLLDELEALAD---FRVVV 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 166 TLDNGqKEGFKeGFAMNYVKDIPfqEWGEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGHCKIN 245
Cdd:COG0543   154 TTDDG-WYGRK-GFVTDALKELL--AEDSGDDVYACGPPPMMKAVAELLLERGVPPERIYVSLERRMACGIGMCGGCVVP 229
                         250
                  ....*....|....*..
gi 1589197025 246 ETYVCLEGPVFPYTKAK 262
Cdd:COG0543   230 VGGGCKDGPVFDAAEVD 246
PRK08345 PRK08345
cytochrome-c3 hydrogenase subunit gamma; Provisional
3-258 3.01e-59

cytochrome-c3 hydrogenase subunit gamma; Provisional


Pssm-ID: 236247 [Multi-domain]  Cd Length: 289  Bit Score: 189.63  E-value: 3.01e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKHRILDIIEETDLESTFVVEFPNASI------RHGQFFEISLPKIGEAPISV--SSFTDSTVEFTIRRVGKLTN 74
Cdd:PRK08345    1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELaesftfKPGQFVQVTIPGVGEVPISIcsSPTRKGFFELCIRRAGRVTT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  75 VIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDL-K 153
Cdd:PRK08345   81 VIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFYDELiK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 154 AFVNAPHF--HTTLTLD------NGQKEGFKEGFAMNYVKDIPFQEWG--EDYAVIIVGPPVMMKFTAQECMKYGVQEEH 223
Cdd:PRK08345  161 DLAEAENVkiIQSVTRDpewpgcHGLPQGFIERVCKGVVTDLFREANTdpKNTYAAICGPPVMYKFVFKELINRGYRPER 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1589197025 224 IYVSFERKMSCALGKCGHCKINET----YVCLEGPVFPY 258
Cdd:PRK08345  241 IYVTLERRMRCGIGKCGHCIVGTStsikYVCKDGPVFTY 279
PRK00054 PRK00054
dihydroorotate dehydrogenase electron transfer subunit; Reviewed
6-257 6.78e-49

dihydroorotate dehydrogenase electron transfer subunit; Reviewed


Pssm-ID: 234601 [Multi-domain]  Cd Length: 250  Bit Score: 161.96  E-value: 6.78e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   6 LPEKHRILDIIEETDLESTFVVEFP-NASIRHGQFFEISLP---KIGEAPISVSSFTDSTVEFTIRRVGKLTNVIFDLAP 81
Cdd:PRK00054    3 KPENMKIVENKEIAPNIYTLVLDGEkVFDMKPGQFVMVWVPgvePLLERPISISDIDKNEITILYRKVGEGTKKLSKLKE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  82 GDDLYIRGPYGNGFPLESFKNKhVVVIAGGTGVAPVRSTLKHFLhhpQDCKDVYAIAGFRDPSHTLFENDLKAFVNaphf 161
Cdd:PRK00054   83 GDELDIRGPLGNGFDLEEIGGK-VLLVGGGIGVAPLYELAKELK---KKGVEVTTVLGARTKDEVIFEEEFAKVGD---- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 162 hTTLTLDNGqKEGFKeGFamnyVKDIpFQEWGEDYAVIIV-GPPVMMKFTAQECMKYGVqeeHIYVSFERKMSCALGKCG 240
Cdd:PRK00054  155 -VYVTTDDG-SYGFK-GF----VTDV-LDELDSEYDAIYScGPEIMMKKVVEILKEKKV---PAYVSLERRMKCGIGACG 223
                         250       260
                  ....*....|....*....|.
gi 1589197025 241 HC--KINETY--VCLEGPVFP 257
Cdd:PRK00054  224 ACvcDTETGGkrVCKDGPVFS 244
DHOD_e_trans_like2 cd06220
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like ...
11-256 5.04e-47

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.


Pssm-ID: 99816 [Multi-domain]  Cd Length: 233  Bit Score: 156.64  E-value: 5.04e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEFpNASIRHGQFFEISLPKIGEAPISVSSfTDSTVEFTIRRVGKLTNVIFDLAPGDDLYIRGP 90
Cdd:cd06220     2 TIKEVIDETPTVKTFVFDW-DFDFKPGQFVMVWVPGVDEIPMSLSY-IDGPNSITVKKVGEATSALHDLKEGDKLGIRGP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  91 YGNGFPLESFKnkhVVVIAGGTGVAPVRSTLKHFLhhpqDCKDVYAIAGFRDPSHTLFENDLKAFVNAphfhtTLTLDNG 170
Cdd:cd06220    80 YGNGFELVGGK---VLLIGGGIGIAPLAPLAERLK----KAADVTVLLGARTKEELLFLDRLRKSDEL-----IVTTDDG 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 171 QkEGFKeGFAMNYVKDIPfqewGEDYAVIIV-GPPVMMKFTAQECMKYGVQEEhiyVSFERKMSCALGKCGHCKINET-- 247
Cdd:cd06220   148 S-YGFK-GFVTDLLKELD----LEEYDAIYVcGPEIMMYKVLEILDERGVRAQ---FSLERYMKCGIGICGSCCIDPTgl 218

                  ....*....
gi 1589197025 248 YVCLEGPVF 256
Cdd:cd06220   219 RVCRDGPVF 227
DHOD_e_trans_like cd06192
FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like ...
25-256 4.81e-38

FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99789 [Multi-domain]  Cd Length: 243  Bit Score: 133.61  E-value: 4.81e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  25 FVVEFPNAsIRH---GQFFEISL---PKIGEAPISVSSFT--DSTVEFTIRRVGKLTNVIFDLAPGDDLYIRGPYGNGFP 96
Cdd:cd06192    14 LTIKAPLA-ARLfrpGQFVFLRNfesPGLERIPLSLAGVDpeEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPLGNGFE 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  97 LESfKNKHVVVIAGGTGVAPVRSTLKHFLhhPQDCKdVYAIAGFRDPshtlFENDLKAFVNAPHFHTTLTLDNGqkEGFK 176
Cdd:cd06192    93 GPK-KGGTVLLVAGGIGLAPLLPIAKKLA--ANGNK-VTVLAGAKKA----KEEFLDEYFELPADVEIWTTDDG--ELGL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 177 EGFAMNYVKDIPFQEWgeDYaVIIVGPPVMMKFTAQECMKYGVQEEhIYVSFERKMSCALGKCGHCKInET-----YVCL 251
Cdd:cd06192   163 EGKVTDSDKPIPLEDV--DR-IIVAGSDIMMKAVVEALDEWLQLIK-ASVSNNSPMCCGIGICGACTI-ETkhgvkRLCK 237

                  ....*
gi 1589197025 252 EGPVF 256
Cdd:cd06192   238 DGPVF 242
DHOD_e_trans cd06218
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. ...
32-257 2.94e-35

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.


Pssm-ID: 99814 [Multi-domain]  Cd Length: 246  Bit Score: 126.51  E-value: 2.94e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  32 ASIRHGQFFEISLPKIGEA----PISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDLYIRGPYGNGFPLESfKNKHV 105
Cdd:cd06218    23 AAAKPGQFVMLRVPDGSDPllrrPISIHDVdpEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLGNGFDLPD-DDGKV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 106 VVIAGGTGVAPVrstlkHFL--HHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFHTtltlDNGqKEGFKeGFamny 183
Cdd:cd06218   102 LLVGGGIGIAPL-----LFLakQLAERGIKVTVLLGFRSADDLFLVEEFEALGAEVYVAT----DDG-SAGTK-GF---- 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 184 VKDIpFQEWGEDYAVIIV---GPPVMMKFTAQECMKYGVqeeHIYVSFERKMSCALGKCGHC----KINETY---VCLEG 253
Cdd:cd06218   167 VTDL-LKELLAEARPDVVyacGPEPMLKAVAELAAERGV---PCQVSLEERMACGIGACLGCvvktKDDEGGykrVCKDG 242

                  ....
gi 1589197025 254 PVFP 257
Cdd:cd06218   243 PVFD 246
DHOD_e_trans_like1 cd06219
FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like ...
15-256 2.39e-30

FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD, forming FADH2 via a semiquinone intermediate, and then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99815 [Multi-domain]  Cd Length: 248  Bit Score: 113.83  E-value: 2.39e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  15 IIEETDLEST---FVVEFPN--ASIRHGQFFEISLPKIGE-APISVSSFT--DSTVEFTIRRVGKLTNVIFDLAPGDDL- 85
Cdd:cd06219     3 ILEKEELAPNvklFEIEAPLiaKKAKPGQFVIVRADEKGErIPLTIADWDpeKGTITIVVQVVGKSTRELATLEEGDKIh 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  86 YIRGPYGNGFPLESFKNkhVVVIAGGTGVAPVRSTLKHFLHHPQDckdVYAIAGFRDPSHTLFENDLKAFVNapHFHttL 165
Cdd:cd06219    83 DVVGPLGKPSEIENYGT--VVFVGGGVGIAPIYPIAKALKEAGNR---VITIIGARTKDLVILEDEFRAVSD--ELI--I 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 166 TLDNGQKeGFKeGFAMNYVKDIPFQewGEDYA-VIIVGPPVMMKFTAQECMKYGVQeehIYVSFERKMSCALGKCGHCKI 244
Cdd:cd06219   154 TTDDGSY-GEK-GFVTDPLKELIES--GEKVDlVIAIGPPIMMKAVSELTRPYGIP---TVVSLNPIMVDGTGMCGACRV 226
                         250
                  ....*....|....*.
gi 1589197025 245 N---ET-YVCLEGPVF 256
Cdd:cd06219   227 TvggETkFACVDGPEF 242
FNR_like cd00322
Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a ...
25-226 4.76e-30

Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99778 [Multi-domain]  Cd Length: 223  Bit Score: 112.16  E-value: 4.76e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  25 FVVEFPNA-SIRHGQFFEISLPKIGEAPISVSSFTDS-----TVEFTIRRV--GKLTNVIFDLAPGDDLYIRGPYGNgFP 96
Cdd:cd00322    13 FRLQLPNGfSFKPGQYVDLHLPGDGRGLRRAYSIASSpdeegELELTVKIVpgGPFSAWLHDLKPGDEVEVSGPGGD-FF 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  97 LESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKdVYAIAGFRDPSHTLFENDLKAFVNAP---HFHTTLTLDNGQKE 173
Cdd:cd00322    92 LPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGE-ITLLYGARTPADLLFLDELEELAKEGpnfRLVLALSRESEAKL 170
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1589197025 174 GfkEGFAMNYVKDIPFQEWGEDYAVI-IVGPPVMMKFTAQECMKYGVQEEHIYV 226
Cdd:cd00322   171 G--PGGRIDREAEILALLPDDSGALVyICGPPAMAKAVREALVSLGVPEERIHT 222
Fpr COG1018
Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];
11-230 3.57e-28

Flavodoxin/ferredoxin--NADP reductase [Energy production and conversion];


Pssm-ID: 440641 [Multi-domain]  Cd Length: 231  Bit Score: 107.57  E-value: 3.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEET-DLES-TFVVEFPNASIRH--GQFFEISLPkIGEAPIS-----VSSFTDSTVEFTIRRV--GKLTNVIFD- 78
Cdd:COG1018     7 RVVEVRRETpDVVSfTLEPPDGAPLPRFrpGQFVTLRLP-IDGKPLRrayslSSAPGDGRLEITVKRVpgGGGSNWLHDh 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  79 LAPGDDLYIRGPYGNgFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLFENDLKAFVNA 158
Cdd:COG1018    86 LKVGDTLEVSGPRGD-FVLDPEPARPLLLIAGGIGITPFLSMLRTLLARGPF-RPVTLVYGARSPADLAFRDELEALAAR 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1589197025 159 -PHFHTTLTLDNGQkEGFKEGFAMNYVKDIpFQEWGEDyAVIIVGPPVMMKFTAQECMKYGVQEEHIYvsFER 230
Cdd:COG1018   164 hPRLRLHPVLSREP-AGLQGRLDAELLAAL-LPDPADA-HVYLCGPPPMMEAVRAALAELGVPEERIH--FER 231
PRK06222 PRK06222
sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;
25-256 4.94e-24

sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;


Pssm-ID: 235747 [Multi-domain]  Cd Length: 281  Bit Score: 97.57  E-value: 4.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  25 FVVEFPN--ASIRHGQFFEISLPKIGE-APISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDLY-IRGPYGNgfPLE 98
Cdd:PRK06222   17 MEIEAPRvaKKAKPGQFVIVRIDEKGErIPLTIADYdrEKGTITIVFQAVGKSTRKLAELKEGDSILdVVGPLGK--PSE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  99 SFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDckdVYAIAGFRDPSHTLFENDLKAFVNaPHFHTTltlDNGQKeGFKeG 178
Cdd:PRK06222   95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAGNK---VITIIGARNKDLLILEDEMKAVSD-ELYVTT---DDGSY-GRK-G 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 179 FAMNYVKDIpfQEWGEDY-AVIIVGPPVMMKFTAQECMKYGVqeeHIYVSFERKMSCALGKCGHCKI---NET-YVCLEG 253
Cdd:PRK06222  166 FVTDVLKEL--LESGKKVdRVVAIGPVIMMKFVAELTKPYGI---KTIVSLNPIMVDGTGMCGACRVtvgGETkFACVDG 240

                  ...
gi 1589197025 254 PVF 256
Cdd:PRK06222  241 PEF 243
cyt_b5_reduct_like cd06183
Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as ...
37-226 5.34e-21

Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.


Pssm-ID: 99780 [Multi-domain]  Cd Length: 234  Bit Score: 88.39  E-value: 5.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEA------PISvSSFTDSTVEFTIRRV--GKLTNVIFDLAPGDDLYIRGPYGNgFPLESFKN-KHVVV 107
Cdd:cd06183    32 GQHVELKAPDDGEQvvrpytPIS-PDDDKGYFDLLIKIYpgGKMSQYLHSLKPGDTVEIRGPFGK-FEYKPNGKvKHIGM 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 108 IAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFV--NAPHFHTTLTLDN-GQKEGFKEGF---AM 181
Cdd:cd06183   110 IAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAkkHPDRFKVHYVLSRpPEGWKGGVGFitkEM 189
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1589197025 182 nyVKDIPFQEWGEDYAVIIVGPPVMMKFTAQECMKY-GVQEEHIYV 226
Cdd:cd06183   190 --IKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKElGYKKDNVFK 233
FNR_iron_sulfur_binding_3 cd06217
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
11-224 9.04e-20

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99813 [Multi-domain]  Cd Length: 235  Bit Score: 85.40  E-value: 9.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEFPNASI---RHGQFFEISLPKIG----EAPISVSSFTDST--VEFTIRRV--GKLTNVIFD- 78
Cdd:cd06217     5 RVTEIIQETPTVKTFRLAVPDGVPppfLAGQHVDLRLTAIDgytaQRSYSIASSPTQRgrVELTVKRVpgGEVSPYLHDe 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  79 LAPGDDLYIRGPYGnGF---PLESFKnkhVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLFENDLKAF 155
Cdd:cd06217    85 VKVGDLLEVRGPIG-TFtwnPLHGDP---VVLLAGGSGIVPLMSMIRYRRDLGWP-VPFRLLYSARTAEDVIFRDELEQL 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1589197025 156 VNA-PHFHTTLTLDNGQKEGFK--EGFAmnyVKDIPFQEWGEDYA--VIIVGPPVMMKFTAQECMKYGVQEEHI 224
Cdd:cd06217   160 ARRhPNLHVTEALTRAAPADWLgpAGRI---TADLIAELVPPLAGrrVYVCGPPAFVEAATRLLLELGVPRDRI 230
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
25-256 1.55e-19

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 87.88  E-value: 1.55e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  25 FVVEFPN--ASIRHGQFFEISLPKIGEA---PISVSSFTDSTVEFTIRRVGKLTNVIFDLAPGDdlYIR---GPYGNGFP 96
Cdd:PRK12778   17 LEIEAPLiaKSRKPGQFVIVRVGEKGERiplTIADADPEKGTITLVIQEVGLSTTKLCELNEGD--YITdvvGPLGNPSE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  97 LESFKNkhVVVIAGGTGVAPVRSTLKhFLHhpQDCKDVYAIAGFRDPSHTLFENDLKAFVNaphfHTTLTLDNGQKeGFK 176
Cdd:PRK12778   95 IENYGT--VVCAGGGVGVAPMLPIVK-ALK--AAGNRVITILGGRSKELIILEDEMRESSD----EVIIMTDDGSY-GRK 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 177 eGFAMNYVKDIPFQEWGEDYAVIIvGPPVMMKFTAQECMKYGVQEEhiyVSFERKMSCALGKCGHCKI---NET-YVCLE 252
Cdd:PRK12778  165 -GLVTDGLEEVIKRETKVDKVFAI-GPAIMMKFVCLLTKKYGIPTI---VSLNTIMVDGTGMCGACRVtvgGKTkFACVD 239

                  ....
gi 1589197025 253 GPVF 256
Cdd:PRK12778  240 GPEF 243
COG4097 COG4097
Predicted ferric reductase [Inorganic ion transport and metabolism];
37-230 7.99e-19

Predicted ferric reductase [Inorganic ion transport and metabolism];


Pssm-ID: 443273 [Multi-domain]  Cd Length: 442  Bit Score: 85.33  E-value: 7.99e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLP----KIGEAPISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIAG 110
Cdd:COG4097   247 GQFAFLRFDgspfWEEAHPFSISSApgGDGRLRFTIKALGDFTRRLGRLKPGTRVYVEGPYGRFTFDRRDTAPRQVWIAG 326
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 111 GTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFV-NAPHFHTTLTLdnGQKEGF--KEGFAmNYVKDI 187
Cdd:COG4097   327 GIGITPFLALLRALAARPGDQRPVDLFYCVRDEEDAPFLEELRALAaRLAGLRLHLVV--SDEDGRltAERLR-RLVPDL 403
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1589197025 188 pfqewgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYvsFER 230
Cdd:COG4097   404 ------AEADVFFCGPPGMMDALRRDLRALGVPARRIH--QER 438
FNR_like_3 cd06198
NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer ...
15-224 2.64e-17

NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99795 [Multi-domain]  Cd Length: 216  Bit Score: 78.07  E-value: 2.64e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  15 IIEETDLESTFVVEFPNASIRH--GQFFEISLP---KIGEAPISVSSFTDS--TVEFTIRRVGKLT-NVIFDLAPGDDLY 86
Cdd:cd06198     2 RVTEVRPTTTLTLEPRGPALGHraGQFAFLRFDasgWEEPHPFTISSAPDPdgRLRFTIKALGDYTrRLAERLKPGTRVT 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  87 IRGPYGnGFPLESFKnKHVVVIAGGTGVAPVRSTLKHFLHHPqDCKDVYAIAGFRDPSHTLFENDLKAFVNAPHFHTTLT 166
Cdd:cd06198    82 VEGPYG-RFTFDDRR-ARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVI 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1589197025 167 LDNGQKEGFKEGFAMNYVKDIpfqewgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHI 224
Cdd:cd06198   159 DSPSDGRLTLEQLVRALVPDL------ADADVWFCGPPGMADALEKGLRALGVPARRF 210
T4MO_e_transfer_like cd06190
Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates ...
22-206 2.19e-16

Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.


Pssm-ID: 99787  Cd Length: 232  Bit Score: 75.75  E-value: 2.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  22 ESTFVVEFPnASIRHGQFFEISLPKI-GEAPISVSSFT--DSTVEFTIRRV--GKLTNVIFD-LAPGDDLYIRGPYGNGF 95
Cdd:cd06190    13 EFRFALDGP-ADFLPGQYALLALPGVeGARAYSMANLAnaSGEWEFIIKRKpgGAASNALFDnLEPGDELELDGPYGLAY 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  96 pLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQ-DCKDVYAIAGFRDPSHTLFENDLKAFVNAP---HFHTTLTLDNGQ 171
Cdd:cd06190    92 -LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYlSDRPVDLFYGGRTPSDLCALDELSALVALGarlRVTPAVSDAGSG 170
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1589197025 172 KEGFKEGFAmNYVKDIPFQEWGEDYA---VIIVGPPVM 206
Cdd:cd06190   171 SAAGWDGPT-GFVHEVVEATLGDRLAefeFYFAGPPPM 207
O2ase_reductase_like cd06187
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
37-226 4.17e-16

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99784 [Multi-domain]  Cd Length: 224  Bit Score: 74.94  E-value: 4.17e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPkigEAPISVSSFT-------DSTVEFTIRRV--GKLTNVIFD-LAPGDDLYIRGPYGnGFPLESFKNKHVV 106
Cdd:cd06187    27 GQYVNVTVP---GRPRTWRAYSpanppneDGEIEFHVRAVpgGRVSNALHDeLKVGDRVRLSGPYG-TFYLRRDHDRPVL 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 107 VIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHtLFEND-LKAFV-NAP--HFHTTLTLDNGQKEGFkEGFAMN 182
Cdd:cd06187   103 CIAGGTGLAPLRAIVEDALRRGEP-RPVHLFFGARTERD-LYDLEgLLALAaRHPwlRVVPVVSHEEGAWTGR-RGLVTD 179
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1589197025 183 YVKDIpFQEWgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIYV 226
Cdd:cd06187   180 VVGRD-GPDW-ADHDIYICGPPAMVDATVDALLARGAPPERIHF 221
FNR_iron_sulfur_binding_1 cd06215
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
11-225 1.54e-15

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99811 [Multi-domain]  Cd Length: 231  Bit Score: 73.39  E-value: 1.54e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEFPNASI---RHGQFFEISLPKIGEAP-----ISVSSFTDSTVEFTIRRV--GKLTNVIFD-L 79
Cdd:cd06215     2 RCVKIIQETPDVKTFRFAAPDGSLfayKPGQFLTLELEIDGETVyraytLSSSPSRPDSLSITVKRVpgGLVSNWLHDnL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  80 APGDDLYIRGPYGnGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLFENDLKAFVNA- 158
Cdd:cd06215    82 KVGDELWASGPAG-EFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD-ADIVFIHSARSPADIIFADELEELARRh 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 159 PHFHTTLTLDNGQkeGFKEGFAMNYVKDIPFQEWGEDYA---VIIVGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:cd06215   160 PNFRLHLILEQPA--PGAWGGYRGRLNAELLALLVPDLKertVFVCGPAGFMKAVKSLLAELGFPMSRFH 227
NqrF COG2871
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and ...
60-225 7.66e-15

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 442118 [Multi-domain]  Cd Length: 396  Bit Score: 73.36  E-value: 7.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  60 STVEFTIRRV--------GKLTNVIFDLAPGDDLYIRGPYGNGFPLESfkNKHVVVIAGGTGVAPVRSTLKHFLHHPQDC 131
Cdd:COG2871   213 GIIELNIRIAtppmdvppGIGSSYIFSLKPGDKVTISGPYGEFFLRDS--DREMVFIGGGAGMAPLRSHIFDLLERGKTD 290
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 132 KDVYAIAGFRDPSHTLFENDLKAFVNA-PHFHTTLTLDNGQKE----GFKeGFAMNYVKD--IPFQEWGEDYAVIIVGPP 204
Cdd:COG2871   291 RKITFWYGARSLRELFYLEEFRELEKEhPNFKFHPALSEPLPEdnwdGET-GFIHEVLYEnyLKDHPAPEDCEAYLCGPP 369
                         170       180
                  ....*....|....*....|.
gi 1589197025 205 VMMKFTAQECMKYGVQEEHIY 225
Cdd:COG2871   370 PMIDAVIKMLDDLGVEEENIY 390
flavin_oxioreductase cd06189
NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron ...
37-225 6.30e-14

NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.


Pssm-ID: 99786 [Multi-domain]  Cd Length: 224  Bit Score: 69.11  E-value: 6.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEAPISVSS--FTDSTVEFTIRRV--GKLTNVIFD-LAPGDDLYIRGPYGNGFpLESFKNKHVVVIAGG 111
Cdd:cd06189    29 GQYLDLLLDDGDKRPFSIASapHEDGEIELHIRAVpgGSFSDYVFEeLKENGLVRIEGPLGDFF-LREDSDRPLILIAGG 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 112 TGVAPVRSTLKHFLHHpQDCKDVYAIAGFRDPSHtLFENDLKAFVNA--PHFH-TTLTLDNGQKEGFKEGFAMNYV-KDI 187
Cdd:cd06189   108 TGFAPIKSILEHLLAQ-GSKRPIHLYWGARTEED-LYLDELLEAWAEahPNFTyVPVLSEPEEGWQGRTGLVHEAVlEDF 185
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1589197025 188 PfqEWgEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:cd06189   186 P--DL-SDFDVYACGSPEMVYAARDDFVEKGLPEENFF 220
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
9-254 3.00e-13

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 69.48  E-value: 3.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   9 KHRILDIIEETDLESTFVVEFPNA--SIRHGQFFEISLPKIGE-APISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGD 83
Cdd:PRK12779  650 PQTIVGKVQLAGGIVEFTVRAPMVarSAQAGQFVRVLPWEKGElIPLTLADWdaEKGTIDLVVQGMGTSSLEINRMAIGD 729
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  84 DLY-IRGPYGNGFPLESFK-NKHVVVIAGGTGVAPVRSTLKhflHHPQDCKDVYAIAGFRDPSHTLFEND------LKAF 155
Cdd:PRK12779  730 AFSgIAGPLGRASELHRYEgNQTVVFCAGGVGLPPVYPIMR---AHLRLGNHVTLISGFRAKEFLFWTGDdervgkLKAE 806
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 156 VnAPHFHTTLTLDNGQ--KEGFKEGFAMNYVKDIPfQEWGEDYA-VIIVGPPVMMKFTAQECMKYGVQeehIYVSFERKM 232
Cdd:PRK12779  807 F-GDQLDVIYTTNDGSfgVKGFVTGPLEEMLKANQ-QGKGRTIAeVIAIGPPLMMRAVSDLTKPYGVK---TVASLNSIM 881
                         250       260       270
                  ....*....|....*....|....*....|
gi 1589197025 233 SCALGKCGHC--------KINETYVCLEGP 254
Cdd:PRK12779  882 VDATGMCGACmvpvtidgKMVRKHACIDGP 911
FNR1 cd06195
Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible ...
11-166 6.96e-13

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99792 [Multi-domain]  Cd Length: 241  Bit Score: 66.43  E-value: 6.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEfPNASIRH--GQFFEISLPKIGEAPIS-----VSSFTDSTVEFTIRRV--GKLTNVIFDLAP 81
Cdd:cd06195     1 TVLKRRDWTDDLFSFRVT-RDIPFRFqaGQFTKLGLPNDDGKLVRraysiASAPYEENLEFYIILVpdGPLTPRLFKLKP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  82 GDDLYI-RGPYGNgFPLESF-KNKHVVVIAGGTGVAPVRSTLKHFLHHpQDCKDVYAIAGFRDPSHTLFENDLKAFVNAP 159
Cdd:cd06195    80 GDTIYVgKKPTGF-LTLDEVpPGKRLWLLATGTGIAPFLSMLRDLEIW-ERFDKIVLVHGVRYAEELAYQDEIEALAKQY 157
                         170
                  ....*....|.
gi 1589197025 160 ----HFHTTLT 166
Cdd:cd06195   158 ngkfRYVPIVS 168
NAD_binding_1 pfam00175
Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have ...
108-212 9.30e-13

Oxidoreductase NAD-binding domain; Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.


Pssm-ID: 425503 [Multi-domain]  Cd Length: 109  Bit Score: 63.05  E-value: 9.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 108 IAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNA--PHFHTTLTLDNGQKEgfKEGFAMnYVK 185
Cdd:pfam00175   2 IAGGTGIAPVRSMLRAILEDPKDPTQVVLVFGNRNEDDILYREELDELAEKhpGRLTVVYVVSRPEAG--WTGGKG-RVQ 78
                          90       100       110
                  ....*....|....*....|....*....|.
gi 1589197025 186 DIPFQEW----GEDYAVIIVGPPVMMKFTAQ 212
Cdd:pfam00175  79 DALLEDHlslpDEETHVYVCGPPGMIKAVRK 109
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
22-256 9.62e-13

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 67.66  E-value: 9.62e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   22 ESTFV--VEFPN--ASIRHGQFFEISLPKIGE-APISVSSF--TDSTVEFTIRRVGKLTNVIFDLAPGDDLYIR--GPYG 92
Cdd:PRK12775    12 DTTFLweVEAPDvaASAEPGHFVMLRLYEGAErIPLTVADFdrKKGTITMVVQALGKTTREMMTKFKAGDTFEDfvGPLG 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   93 ngFPLESFKNKHVVVIAGGTGVAPVRSTLKHFlhhPQDCKDVYAIAGFRDPSHTLFENDLKAFVNaphfHTTLTLDNGQK 172
Cdd:PRK12775    92 --LPQHIDKAGHVVLVGGGLGVAPVYPQLRAF---KEAGARTTGIIGFRNKDLVFWEDKFGKYCD----DLIVCTDDGSY 162
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  173 EgfKEGFAMNYVKDIPFQEWGEdyAVIIVGPPVMMKFTAQECMKYGVQeehIYVSFERKMSCALGKCGHCKI----NETY 248
Cdd:PRK12775   163 G--KPGFVTAALKEVCEKDKPD--LVVAIGPLPMMNACVETTRPFGVK---TMVSLNAIMVDGTGMCGSCRVtvggEVKF 235

                   ....*...
gi 1589197025  249 VCLEGPVF 256
Cdd:PRK12775   236 ACVDGPDF 243
phenol_2-monooxygenase_like cd06211
Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use ...
37-225 1.23e-12

Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.


Pssm-ID: 99807  Cd Length: 238  Bit Score: 65.42  E-value: 1.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIgEAP----ISVSSFTDSTVEFTIRRV--GKLTNVIFD-LAPGDDLYIRGPYGNGFPLESfKNKHVVVIA 109
Cdd:cd06211    39 GQYVNLQAPGY-EGTrafsIASSPSDAGEIELHIRLVpgGIATTYVHKqLKEGDELEISGPYGDFFVRDS-DQRPIIFIA 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 110 GGTGVAPVRSTLKHFLHHpQDCKDVYAIAGFRDPSHTLFENDLKAFVNA-PHFHTTLTLDNGQKE----GFKeGFAMNYV 184
Cdd:cd06211   117 GGSGLSSPRSMILDLLER-GDTRKITLFFGARTRAELYYLDEFEALEKDhPNFKYVPALSREPPEsnwkGFT-GFVHDAA 194
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1589197025 185 KDIpFQEWGEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:cd06211   195 KKH-FKNDFRGHKAYLCGPPPMIDACIKTLMQGRLFERDIY 234
flavohem_like_fad_nad_binding cd06184
FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain ...
3-224 1.29e-12

FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.


Pssm-ID: 99781  Cd Length: 247  Bit Score: 65.66  E-value: 1.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   3 NPWLPEKH-RILDIIEETDLESTFVVE----FPNASIRHGQF--FEISLPKIGEAPI---SVSSF-TDSTVEFTIRRV-- 69
Cdd:cd06184     1 GGWRGFRPfVVARKVAESEDITSFYLEpadgGPLPPFLPGQYlsVRVKLPGLGYRQIrqySLSDApNGDYYRISVKREpg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  70 GKLTNVIFD-LAPGDDLYIRGPYGNgFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLF 148
Cdd:cd06184    81 GLVSNYLHDnVKVGDVLEVSAPAGD-FVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG-RPVTFIHAARNSAVHAF 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 149 ENDLKAFVNA-PHFHTTLTLDNGQKEGFKEGFA----MNyVKDIPFQEWGEDYAVIIVGPPVMMKFTAQECMKYGVQEEH 223
Cdd:cd06184   159 RDELEELAARlPNLKLHVFYSEPEAGDREEDYDhagrID-LALLRELLLPADADFYLCGPVPFMQAVREGLKALGVPAER 237

                  .
gi 1589197025 224 I 224
Cdd:cd06184   238 I 238
PA_degradation_oxidoreductase_like cd06214
NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation ...
11-230 2.58e-12

NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99810 [Multi-domain]  Cd Length: 241  Bit Score: 64.87  E-value: 2.58e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETD--LESTFVVEFPNASI---RHGQFFEISLPKIGEAP-----ISvSSFTDSTVEFTIRRV--GKLTNVIFD 78
Cdd:cd06214     5 TVAEVVRETAdaVSITFDVPEELRDAfryRPGQFLTLRVPIDGEEVrrsysIC-SSPGDDELRITVKRVpgGRFSNWAND 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  79 -LAPGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKdVYAIAGFRDPSHTLFENDLKAFVN 157
Cdd:cd06214    84 eLKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASR-VTLVYGNRTEASVIFREELADLKA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 158 AP----HFHTTLTLDNGQKEGFK--------EGFAMNYVKDIPFQEWgedYaviIVGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:cd06214   163 RYpdrlTVIHVLSREQGDPDLLRgrldaaklNALLKNLLDATEFDEA---F---LCGPEPMMDAVEAALLELGVPAERIH 236

                  ....*
gi 1589197025 226 vsFER 230
Cdd:cd06214   237 --REL 239
PRK05802 PRK05802
sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;
49-245 6.10e-12

sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein;


Pssm-ID: 235613 [Multi-domain]  Cd Length: 320  Bit Score: 64.61  E-value: 6.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  49 EAPISV-SSFTDS-TVEFTIRRVGKLTNVIFDLAPGDDLYIRGPYGNGF----PLESFKNKHVVVIAGGTGVAPVRSTLK 122
Cdd:PRK05802  113 DVPISImEADTEEnIIKVAIEIRGVKTKKIAKLNKGDEILLRGPYWNGIlglkNIKSTKNGKSLVIARGIGQAPGVPVIK 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 123 HFLHHPQdckDVYAIAGFRDPSHTLFENDLKAFvNAPHFHTTLTLDNGQKEGFKEgFAMNYVKDipfqewgEDYAVIIVG 202
Cdd:PRK05802  193 KLYSNGN---KIIVIIDKGPFKNNFIKEYLELY-NIEIIELNLLDDGELSEEGKD-ILKEIIKK-------EDINLIHCG 260
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1589197025 203 PPVMMKFTAQECMKYGVQEEHIYVSFERKMSCALGKCGHCKIN 245
Cdd:PRK05802  261 GSDILHYKIIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVR 303
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
54-225 7.52e-12

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 64.34  E-value: 7.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  54 VSSFtdstVEFTIRRV------GKLTNvifDLAPGDDLYIRGPYGNgFPLESFKNKHVVVIAGGTGVAPVRSTLKHFL-H 126
Cdd:PRK10684   65 VSEF----ITLTVRRIddgvgsQWLTR---DVKRGDYLWLSDAMGE-FTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLkN 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 127 HPQdcKDVYAIAGFRDPSHTLFENDLKAFVNA-PHFHTTLTLDNGQKEGFKEG-----FAMNYVKDIpfqewgEDYAVII 200
Cdd:PRK10684  137 RPQ--ADVQVIFNVRTPQDVIFADEWRQLKQRyPQLNLTLVAENNATEGFIAGrltreLLQQAVPDL------ASRTVMT 208
                         170       180
                  ....*....|....*....|....*
gi 1589197025 201 VGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:PRK10684  209 CGPAPYMDWVEQEVKALGVTADRFF 233
oxygenase_e_transfer_subunit cd06213
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
37-225 1.02e-11

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.


Pssm-ID: 99809  Cd Length: 227  Bit Score: 62.71  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEA---PISVSSFTDSTVEFTIRRV--GKLTNVIFDLA-PGDDLYIRGPYGNgFPLESFKNkHVVVIAG 110
Cdd:cd06213    31 GQYAELTLPGLPAArsySFANAPQGDGQLSFHIRKVpgGAFSGWLFGADrTGERLTVRGPFGD-FWLRPGDA-PILCIAG 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 111 GTGVAPVRSTLKHFLHHpQDCKDVYAIAGFRDPS--HTLFENDLKAFVNAPHFHTTLTLDNGQKEGFKEGfAMNYVKDIP 188
Cdd:cd06213   109 GSGLAPILAILEQARAA-GTKRDVTLLFGARTQRdlYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKG-ARGLVTEHI 186
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1589197025 189 FQEWGEDYAVIIVGPPVMMKFTAQECMKYGVQEEHIY 225
Cdd:cd06213   187 AEVLLAATEAYLCGPPAMIDAAIAVLRALGIAREHIH 223
MMO_FAD_NAD_binding cd06210
Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent ...
37-230 1.70e-11

Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.


Pssm-ID: 99806  Cd Length: 236  Bit Score: 62.36  E-value: 1.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEA-PISVSSFT--DSTVEFTIRRV--GKLTNVIFDLA-PGDDLYIRGPYGnGFPLESFKNKHVVVIAG 110
Cdd:cd06210    38 GQFVEIEIPGTDTRrSYSLANTPnwDGRLEFLIRLLpgGAFSTYLETRAkVGQRLNLRGPLG-AFGLRENGLRPRWFVAG 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 111 GTGVAPVRSTLKHF--LHHPQDCKDVYaiaGFRDpSHTLF-ENDLKAFVNA-PHF--HTTLTLDNGQKEGFKegfamNYV 184
Cdd:cd06210   117 GTGLAPLLSMLRRMaeWGEPQEARLFF---GVNT-EAELFyLDELKRLADSlPNLtvRICVWRPGGEWEGYR-----GTV 187
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1589197025 185 KDIpFQEWGEDYA----VIIVGPPVMMKFTAQECMKYGVQEEHIYvsFER 230
Cdd:cd06210   188 VDA-LREDLASSDakpdIYLCGPPGMVDAAFAAAREAGVPDEQVY--LEK 234
NADH_quinone_reductase cd06188
Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) ...
70-224 1.81e-11

Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.


Pssm-ID: 99785 [Multi-domain]  Cd Length: 283  Bit Score: 62.71  E-value: 1.81e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGPYGNGFPLESfkNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFE 149
Cdd:cd06188   120 GIGSSYIFNLKPGDKVTASGPFGEFFIKDT--DREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQ 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 150 NDLKAFVNA-PHFHTTLTLDNGQKEGFKEGFAmNYVKDIpFQEW-------GEDYAVIIVGPPVMMKFTAQECMKYGVQE 221
Cdd:cd06188   198 EEFEALEKEfPNFKYHPVLSEPQPEDNWDGYT-GFIHQV-LLENylkkhpaPEDIEFYLCGPPPMNSAVIKMLDDLGVPR 275

                  ...
gi 1589197025 222 EHI 224
Cdd:cd06188   276 ENI 278
nqrF TIGR01941
NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; This model represents the NqrF ...
70-224 7.79e-11

NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 130996 [Multi-domain]  Cd Length: 405  Bit Score: 61.74  E-value: 7.79e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGPYGNGFPLESfkNKHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGFRDPSHTLFE 149
Cdd:TIGR01941 240 GIMSSYIFSLKPGDKVTISGPFGEFFAKDT--DAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQ 317
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 150 NDLKAF-VNAPHFHTTLTLDNGQKE-------GF-KEGFAMNYVKDIPFQewgEDYAVIIVGPPVMMKFTAQECMKYGVQ 220
Cdd:TIGR01941 318 EDFDQLeAENPNFVWHVALSDPQPEdnwtgytGFiHNVLYENYLKDHDAP---EDCEFYMCGPPMMNAAVIKMLEDLGVE 394

                  ....
gi 1589197025 221 EEHI 224
Cdd:TIGR01941 395 RENI 398
CYPOR_like_FNR cd06208
These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but ...
42-155 5.23e-10

These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99804 [Multi-domain]  Cd Length: 286  Bit Score: 58.49  E-value: 5.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  42 ISLPKIGEAPisvssfTDSTVEFTIRRV------------GKLTNVIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIA 109
Cdd:cd06208    69 IASSRYGDDG------DGKTLSLCVKRLvytdpetdetkkGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIA 142
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1589197025 110 GGTGVAPVRSTLKHFLHhpQDCKD------VYAIAGFRDPSHTLFENDLKAF 155
Cdd:cd06208   143 TGTGIAPFRSFLRRLFR--EKHADykftglAWLFFGVPNSDSLLYDDELEKY 192
NOX_Duox_like_FAD_NADP cd06186
NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as ...
20-130 6.22e-10

NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.


Pssm-ID: 99783 [Multi-domain]  Cd Length: 210  Bit Score: 57.31  E-value: 6.22e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  20 DLESTFVVEFPNASIRH---GQFFEISLPKIG---EA----PISVSSFTDSTVEFTIRRVGKLTNVIFDLAPGDD----- 84
Cdd:cd06186     8 PDSDVIRLTIPKPKPFKwkpGQHVYLNFPSLLsfwQShpftIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKSPgggvs 87
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1589197025  85 --LYIRGPYGNGF-PLESFKnkHVVVIAGGTGVAPVRSTLKHFLHHPQD 130
Cdd:cd06186    88 lkVLVEGPYGSSSeDLLSYD--NVLLVAGGSGITFVLPILRDLLRRSSK 134
FNR_iron_sulfur_binding_2 cd06216
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
11-207 5.02e-09

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99812 [Multi-domain]  Cd Length: 243  Bit Score: 55.31  E-value: 5.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  11 RILDIIEETDLESTFVVEfPNASIRH---GQFFEISLPKIGE------APISVSSFTDSTVEFTIRRV--GKLTNVIFD- 78
Cdd:cd06216    21 RVVAVRPETADMVTLTLR-PNRGWPGhraGQHVRLGVEIDGVrhwrsySLSSSPTQEDGTITLTVKAQpdGLVSNWLVNh 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  79 LAPGDDLYIRGPYGNgFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLFENDLKAFVNA 158
Cdd:cd06216   100 LAPGDVVELSQPQGD-FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT-ADVVLLYYARTREDVIFADELRALAAQ 177
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1589197025 159 -PHFHTTLTLDNGQKEGFkegFAMNYVKDIPfqEWGEDYAVIIVGPPVMM 207
Cdd:cd06216   178 hPNLRLHLLYTREELDGR---LSAAHLDAVV--PDLADRQVYACGPPGFL 222
PTZ00319 PTZ00319
NADH-cytochrome B5 reductase; Provisional
70-209 5.27e-09

NADH-cytochrome B5 reductase; Provisional


Pssm-ID: 173521 [Multi-domain]  Cd Length: 300  Bit Score: 55.61  E-value: 5.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGPYG------NGF-----PLESFKNKHV---VVIAGGTGVAPVRSTLKHFLHHPQDCKDVY 135
Cdd:PTZ00319  120 GRLSQHLYHMKLGDKIEMRGPVGkfeylgNGTytvhkGKGGLKTMHVdafAMIAGGTGITPMLQIIHAIKKNKEDRTKVF 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 136 AIAGFRDPSHTLFENDLKAFVNAPHFHTTLTLDNGQKEGFKegFAMNYVKD----------IPFQEWGEDYAVIIVGPPV 205
Cdd:PTZ00319  200 LVYANQTEDDILLRKELDEAAKDPRFHVWYTLDREATPEWK--YGTGYVDEemlrahlpvpDPQNSGIKKVMALMCGPPP 277

                  ....
gi 1589197025 206 MMKF 209
Cdd:PTZ00319  278 MLQM 281
FNR_N-term_Iron_sulfur_binding cd06194
Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding ...
59-143 6.00e-09

Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99791 [Multi-domain]  Cd Length: 222  Bit Score: 54.97  E-value: 6.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  59 DSTVEFTIRRV--GKLTNVIFDLA-PGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTLKHFLHH-PQdcKDV 134
Cdd:cd06194    51 DNELEFHIRRKpnGAFSGWLGEEArPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQgHQ--GEI 128

                  ....*....
gi 1589197025 135 YAIAGFRDP 143
Cdd:cd06194   129 RLVHGARDP 137
monooxygenase_like cd06212
The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial ...
37-123 2.62e-08

The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.


Pssm-ID: 99808 [Multi-domain]  Cd Length: 232  Bit Score: 53.10  E-value: 2.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEA---PISVSSFTDSTVEFTIRRV------GKLTNvifDLAPGDDLYIRGPYGnGFPLESFKNKHVVV 107
Cdd:cd06212    33 GQYVDITVPGTEETrsfSMANTPADPGRLEFIIKKYpgglfsSFLDD---GLAVGDPVTVTGPYG-TCTLRESRDRPIVL 108
                          90
                  ....*....|....*.
gi 1589197025 108 IAGGTGVAPVRSTLKH 123
Cdd:cd06212   109 IGGGSGMAPLLSLLRD 124
BenDO_FAD_NAD cd06209
Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons ...
37-230 9.28e-08

Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.


Pssm-ID: 99805 [Multi-domain]  Cd Length: 228  Bit Score: 51.44  E-value: 9.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLPKIGEA-PISVSSFTDS-TVEFTIRRV--GKLTNVIFDLA-PGDDLYIRGPYGngfpleSFKNKHVV----V 107
Cdd:cd06209    34 GQYVNLQVPGTDETrSYSFSSAPGDpRLEFLIRLLpgGAMSSYLRDRAqPGDRLTLTGPLG------SFYLREVKrpllM 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 108 IAGGTGVAPVRSTLKHFLHHPQDCKdVYAIAGFRDPSHtLFEND-LKAFVNA-PHFHTTLTLDNGQKEGFKEGFAMNYVK 185
Cdd:cd06209   108 LAGGTGLAPFLSMLDVLAEDGSAHP-VHLVYGVTRDAD-LVELDrLEALAERlPGFSFRTVVADPDSWHPRKGYVTDHLE 185
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1589197025 186 DIPFQewGEDYAVIIVGPPVMMK-----FTAQecmkyGVQEEHIYvsFER 230
Cdd:cd06209   186 AEDLN--DGDVDVYLCGPPPMVDavrswLDEQ-----GIEPANFY--YEK 226
PLN03115 PLN03115
ferredoxin--NADP(+) reductase; Provisional
50-132 4.24e-07

ferredoxin--NADP(+) reductase; Provisional


Pssm-ID: 215585 [Multi-domain]  Cd Length: 367  Bit Score: 50.39  E-value: 4.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  50 APISVSSFTDS-TVEFTIRRV-----------GKLTNVIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPV 117
Cdd:PLN03115  151 ASSALGDFGDSkTVSLCVKRLvytndqgeivkGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPF 230
                          90
                  ....*....|....*.
gi 1589197025 118 RSTL-KHFLHHPQDCK 132
Cdd:PLN03115  231 RSFLwKMFFEKHDDYK 246
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
37-127 1.03e-06

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 49.10  E-value: 1.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  37 GQFFEISLpKIGEApisvSSF-------TDSTVEFTIRRV--GKLTNVIFD-LAPGDDLYIRGPYGNGFpLESFKNKHVV 106
Cdd:PRK07609  135 GQYIEFIL-KDGKR----RSYsianaphSGGPLELHIRHMpgGVFTDHVFGaLKERDILRIEGPLGTFF-LREDSDKPIV 208
                          90       100
                  ....*....|....*....|.
gi 1589197025 107 VIAGGTGVAPVRSTLKHFLHH 127
Cdd:PRK07609  209 LLASGTGFAPIKSIVEHLRAK 229
PLN02252 PLN02252
nitrate reductase [NADPH]
70-217 4.75e-06

nitrate reductase [NADPH]


Pssm-ID: 215141 [Multi-domain]  Cd Length: 888  Bit Score: 47.36  E-value: 4.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGP-----Y-GNGFPLESFKNKHV---VVIAGGTGVAPVRSTLKHFLHHPQDCKDVYAIAGF 140
Cdd:PLN02252  717 GLMSQYLDSLPIGDTIDVKGPlghieYaGRGSFLVNGKPKFAkklAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYAN 796
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 141 RDPSHTLFENDLKAFVNA-PH-FHTTLTLDNGQKEGFKegFAMNYVKDIPFQEW----GEDYAVIIVGPPVMMKFTAQ-- 212
Cdd:PLN02252  797 RTEDDILLREELDRWAAEhPDrLKVWYVVSQVKREGWK--YSVGRVTEAMLREHlpegGDETLALMCGPPPMIEFACQpn 874

                  ....*.
gi 1589197025 213 -ECMKY 217
Cdd:PLN02252  875 lEKMGY 880
DHODB_Fe-S_bind pfam10418
Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Lactococcus lactis is ...
229-260 1.04e-05

Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Lactococcus lactis is one of the few organizms with two dihydroorotate dehydrogenases, DHODs, A and B. The B enzyme is a prototype for DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a hetero-tetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulfur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulfur cluster. The conformation of the whole molecule means that the iron-sulfur cluster is localized in a well-ordered part of this domain close to the FAD binding site. The FAD and and NAD binding domains are FAD_binding_6, pfam00970 and NAD_binding_1, pfam00175.


Pssm-ID: 463084 [Multi-domain]  Cd Length: 40  Bit Score: 41.43  E-value: 1.04e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1589197025 229 ERKMSCALGKCGHCKI-------NETYVCLEGPVFPYTK 260
Cdd:pfam10418   1 EERMACGVGACGGCVVktkggdgEYKRVCVDGPVFDADE 39
FNR_like_1 cd06196
Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain ...
59-224 6.14e-05

Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.


Pssm-ID: 99793 [Multi-domain]  Cd Length: 218  Bit Score: 43.00  E-value: 6.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  59 DSTVEFTIRRV---GKLTNVIFDLAPGDDLYIRGPYGNgfplESFKNKHVVvIAGGTGVAPVRSTLKHFLHHPQ--DCKD 133
Cdd:cd06196    58 DDVLEFVIKSYpdhDGVTEQLGRLQPGDTLLIEDPWGA----IEYKGPGVF-IAGGAGITPFIAILRDLAAKGKleGNTL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025 134 VYAIAGFRDpshTLFENDLKAfvnAPHFHTTLTLDNGQKEGFKEG-----FAMNYVKDipfqeWGEDYAViiVGPPVMMK 208
Cdd:cd06196   133 IFANKTEKD---IILKDELEK---MLGLKFINVVTDEKDPGYAHGridkaFLKQHVTD-----FNQHFYV--CGPPPMEE 199
                         170
                  ....*....|....*.
gi 1589197025 209 FTAQECMKYGVQEEHI 224
Cdd:cd06196   200 AINGALKELGVPEDSI 215
CYPOR_like cd06182
NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase ...
53-161 6.70e-05

NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99779 [Multi-domain]  Cd Length: 267  Bit Score: 43.09  E-value: 6.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  53 SVSSFTDSTVEFTIRRV-----------GKLTNVIFDLAPGDDLYIRGPYGNGFPLESFKNKHVVVIAGGTGVAPVRSTL 121
Cdd:cd06182    55 SSPDVDPGEVHLCVRVVsyeapagrirkGVCSNFLAGLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFL 134
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1589197025 122 KH---FLHHPQDCKDVYAIAGFRDPSHT-LFENDLKAFVNAPHF 161
Cdd:cd06182   135 QEraaLRANGKARGPAWLFFGCRNFASDyLYREELQEALKDGAL 178
fre PRK08051
FMN reductase; Validated
87-225 4.48e-04

FMN reductase; Validated


Pssm-ID: 236142 [Multi-domain]  Cd Length: 232  Bit Score: 40.61  E-value: 4.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  87 IRGPYGNGFpLESFKNKHVVVIAGGTGVAPVRSTLKHFLHHPQDcKDVYAIAGFRDPSHTLFENDLKAFVNA-PHFHTTL 165
Cdd:PRK08051   88 VDIPHGDAW-LREESERPLLLIAGGTGFSYARSILLTALAQGPN-RPITLYWGGREEDHLYDLDELEALALKhPNLHFVP 165
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1589197025 166 TLDNGQKE--GfKEGFAMNYVKdipfQEWG--EDYAVIIVGPPVMMKfTAQE--CMKYGVQEEHIY 225
Cdd:PRK08051  166 VVEQPEEGwqG-KTGTVLTAVM----QDFGslAEYDIYIAGRFEMAK-IARElfCRERGAREEHLF 225
PLN03116 PLN03116
ferredoxin--NADP+ reductase; Provisional
70-125 5.32e-04

ferredoxin--NADP+ reductase; Provisional


Pssm-ID: 215586 [Multi-domain]  Cd Length: 307  Bit Score: 40.85  E-value: 5.32e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGPYGNGFPL-ESFKNKHVVVIAGGTGVAPVRSTLKHFL 125
Cdd:PLN03116  123 GVCSNFLCDAKPGDKVQITGPSGKVMLLpEEDPNATHIMVATGTGIAPFRGFLRRMF 179
CysJ COG0369
Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases ...
5-127 5.37e-04

Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases [Nucleotide transport and metabolism, Inorganic ion transport and metabolism]; Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases is part of the Pathway/BioSystem: Cysteine biosynthesis


Pssm-ID: 440138 [Multi-domain]  Cd Length: 561  Bit Score: 40.90  E-value: 5.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025   5 WLpEKHRILDIIEEtdlestfvveFPNASIRHGQFFEIsLPKIgeAP----ISvSSF---------TDSTVEFTI---RR 68
Cdd:COG0369   316 YL-AGRQLLDLLRE----------FPAAELSAEELLEL-LRPL--TPrlysIS-SSPkahpdevhlTVGVVRYEAsgrER 380
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1589197025  69 VGKLTNVIFDLAPGDDL--YIRGPygNGFPLESFKNKHVVVIAGGTGVAPVRStlkhFLHH 127
Cdd:COG0369   381 KGVASTYLADLEEGDTVpvFVEPN--PNFRLPADPDTPIIMIGPGTGIAPFRA----FLQE 435
FNR_like_2 cd06197
FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) ...
54-159 5.79e-04

FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).


Pssm-ID: 99794  Cd Length: 220  Bit Score: 40.07  E-value: 5.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  54 VSSF-----TDSTVEFTIRRVGKLTNVIFDLA-----PGDDLYIRGpYGNGFPLESF---KNKHVVVIAGGTGVAPVRST 120
Cdd:cd06197    65 VSSApphdpATDEFEITVRKKGPVTGFLFQVArrlreQGLEVPVLG-VGGEFTLSLPgegAERKMVWIAGGVGITPFLAM 143
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1589197025 121 LKHFLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNAP 159
Cdd:cd06197   144 LRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPGLP 182
SiR_like2 cd06201
Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta ...
55-152 6.99e-04

Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.


Pssm-ID: 99798 [Multi-domain]  Cd Length: 289  Bit Score: 40.39  E-value: 6.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  55 SSFTDSTVEFTIRR--VGKLTNVIFDLAPGD--DLYIRgpygngfPLESF----KNKHVVVIAGGTGVAPvrstLKHFLH 126
Cdd:cd06201   107 SSSSDGFLEICVRKhpGGLCSGYLHGLKPGDtiKAFIR-------PNPSFrpakGAAPVILIGAGTGIAP----LAGFIR 175
                          90       100
                  ....*....|....*....|....*..
gi 1589197025 127 HPQDCKDVYAIAGFRDP-SHTLFENDL 152
Cdd:cd06201   176 ANAARRPMHLYWGGRDPaSDFLYEDEL 202
FAD_binding_6 pfam00970
Oxidoreductase FAD-binding domain;
37-93 9.23e-04

Oxidoreductase FAD-binding domain;


Pssm-ID: 425968 [Multi-domain]  Cd Length: 99  Bit Score: 37.56  E-value: 9.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1589197025  37 GQFFEISLPKIGEA------PISVSSfTDSTVEFTIRRV--GKLTNVIFDLAPGDDLYIRGPYGN 93
Cdd:pfam00970  33 GQHLFLRLPIDGELvirsytPISSDD-DKGYLELLVKVYpgGKMSQYLDELKIGDTIDFKGPLGR 96
PRK13289 PRK13289
NO-inducible flavohemoprotein;
79-224 1.56e-03

NO-inducible flavohemoprotein;


Pssm-ID: 237337 [Multi-domain]  Cd Length: 399  Bit Score: 39.40  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  79 LAPGDDLYIRGPYGNgFPLESFKNKHVVVIAGGTGVAPVRSTLKHfLHHPQDCKDVYAIAGFRDPSHTLFENDLKAFVNA 158
Cdd:PRK13289  239 VNVGDVLELAAPAGD-FFLDVASDTPVVLISGGVGITPMLSMLET-LAAQQPKRPVHFIHAARNGGVHAFRDEVEALAAR 316
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1589197025 159 -PHFHTT------LTLDNGQKEGFKEGF-AMNYVKD-IPFQEwGEDYaviIVGPPVMMKFTAQECMKYGVQEEHI 224
Cdd:PRK13289  317 hPNLKAHtwyrepTEQDRAGEDFDSEGLmDLEWLEAwLPDPD-ADFY---FCGPVPFMQFVAKQLLELGVPEERI 387
PTZ00274 PTZ00274
cytochrome b5 reductase; Provisional
70-134 1.81e-03

cytochrome b5 reductase; Provisional


Pssm-ID: 140300  Cd Length: 325  Bit Score: 39.13  E-value: 1.81e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1589197025  70 GKLTNVIFDLAPGDDLYIRGPygnGFPLESFKN--KHVVVIAGGTGVAPVRSTLKHFLHHPQDCKDV 134
Cdd:PTZ00274  128 GLMTNHLFGMHVGDKLLFRSV---TFKIQYRPNrwKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEV 191
PLN02844 PLN02844
oxidoreductase/ferric-chelate reductase
52-156 9.22e-03

oxidoreductase/ferric-chelate reductase


Pssm-ID: 215453 [Multi-domain]  Cd Length: 722  Bit Score: 37.13  E-value: 9.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589197025  52 ISVSSFTDSTVEFTIRRVGKLTNVIFDL--APGDD---------LYIRGPYGNGfPLESFKNKHVVVIAGGTGVAPVRST 120
Cdd:PLN02844  363 TSSSNIDDHTMSVIIKCEGGWTNSLYNKiqAELDSetnqmncipVAIEGPYGPA-SVDFLRYDSLLLVAGGIGITPFLSI 441
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1589197025 121 LKHF-------LHHPQDCKDVYAIAGFRD-------------PSHTLFENDLKAFV 156
Cdd:PLN02844  442 LKEIasqsssrYRFPKRVQLIYVVKKSQDicllnpisslllnQSSNQLNLKLKVFV 497
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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