|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
34-856 |
1.48e-156 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 482.30 E-value: 1.48e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 34 REKLQETLQVECEQLEkdlhwQEERLETLTSSFLSAQFACSRNLISHYMSEFQQKGLVIKTNTRPVYFFWRKSLENRFGV 113
Cdd:COG1221 4 KEKILNYLKELTKNLS-----LEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFLDKEAFEEQFGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 114 ILKAELYETLEDLKNILEKKQQHAFHNLIGANDSLSYVVEQCKAAISYPEHGLPILLQGPTGTGKSLIAQLMYQYGVEME 193
Cdd:COG1221 79 KLKSEYSFVELLAEKENNEEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 194 ILSKDSRFMTMNCSEYANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYH 273
Cdd:COG1221 159 VLPEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 274 MVGDNDTWYVSNARLIFATTEQPDEVLLKTLLRRIPLIVKVPSLAERPLQEKRELLQFLIQEEEKHIQRKISMSDLVFRT 353
Cdd:COG1221 239 RLGETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 354 LERHTFTGNIGELKNVIRASVAKAFLRN-QKDMDDVSLHIYDLSSDLLESTGKDVT-------LYDYDDRAMI--HSEDM 423
Cdd:COG1221 319 LLLYDCPGNIGQLKSDIQLACAKAFLNYiTNKKEEIEITLSDLPENVKKGLLKLKEnreeldkLSEYLEEYLIisPDTEK 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 424 FLSIHKDSRLYNFNAY--LIHKFHTLHAY---EKDLNayldsccLKLEQYIDSLFTEHTYHSPKLDMINHLLTNIMNIVI 498
Cdd:COG1221 399 KLISEEDEYELPYNFYeiIEDKYEELKSEglsEEEIN-------KIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVI 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 499 hKYDLEKFSNNEISMIVHFLNDYMQSLSSINQLKIQNRKEAEE----LQNRIHNEYTNEYNVIGDIWQLISDALSFTPGP 574
Cdd:COG1221 472 -VNVVEIFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKiinpQLNEIKKKYYEEFILAAEAIKIIEEELKILIPD 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 575 FGYLDLFLFFRYFNREMVASPIP---AVIIAHGYAIASGIAEVANQLLKQRIFDAIDMPIESDFNDTVKKLGEYIKGKEN 651
Cdd:COG1221 551 EEEGFILLLLIELKEEKSLSENVivvVVIAHGGAAASSSMAVVNLLLLEVAVAAIDDPPLEVVDVLIEEKTIVVIINKGK 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 652 YNEVIVMVDMGSLEAIHQKMEGMKRMDIGIINNVTT-----KLALDIGSMILEEMPIQEILKQASHRNQYRYEFVKNRKK 726
Cdd:COG1221 631 GGLLLLLDDGGSLFGIIIIEEEGIIIVTVVIVSTTTvleaaARKKLLELDLDEIIVLEELLKNPLESKKIKISTSKKKKI 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 727 QDAILAVCETGIGTAEKISKLMEDSLPKTvsIAMIPYDYDSLVKSGTTSLVFEKYNVLFTVGTKDPKIFDVPFISLEEMI 806
Cdd:COG1221 711 IVTTIAITTGEAGGILILILIIELLDKDL--ILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLAL 788
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 1589195055 807 EQKSVEKTNSVfesIMRPDQIETFNENMIKNFSMDNLLSYLTILDSDKII 856
Cdd:COG1221 789 KLIILIEILVL---LEILIDKEKIENIIKELLSLLNIIIVLLIIDILILI 835
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
141-307 |
1.16e-43 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 156.02 E-value: 1.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 141 LIGANDSLSYVVEQCKAAISYPehgLPILLQGPTGTGKSLIAQLMYQYGVEmeilsKDSRFMTMNCSeyANNPEMLMTNL 220
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLSPR-----ADGPFVAVNCA--AIPEELLESEL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 221 FGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVL 300
Cdd:pfam00158 71 FGHEKGAFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKV-DVRIIAATNRDLEEAV 149
|
....*..
gi 1589195055 301 LKTLLRR 307
Cdd:pfam00158 150 AEGRFRE 156
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
140-374 |
1.71e-21 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 96.66 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 140 NLIGANDSLSYVVEQCKAAISYPEhglPILLQGPTGTGKSLIAQ-LMYqygvemeiLSK--DSRFMTMNCSeyANNPEML 216
Cdd:PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDK---PVLIIGERGTGKELIASrLHY--------LSSrwQGPFISLNCA--ALNENLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 217 MTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ- 295
Cdd:PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQV-NVRLVCATNADl 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 296 PDEVLLKT----LLRRIPL-IVKVPSLAERplQEKRELL--QFLIQeeekhIQRKISM------SDLVFRTLERHTFTGN 362
Cdd:PRK11608 153 PAMVAEGKfradLLDRLAFdVVQLPPLRER--QSDIMLMaeHFAIQ-----MCRELGLplfpgfTERARETLLNYRWPGN 225
|
250
....*....|..
gi 1589195055 363 IGELKNVIRASV 374
Cdd:PRK11608 226 IRELKNVVERSV 237
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
168-374 |
6.77e-21 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 96.74 E-value: 6.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGvemeiLSKDSRFMTMNCseyANNPEMLM-TNLFGYKKGSYTGAEKDTQGLLALADGGI 246
Cdd:TIGR02915 165 VLLLGESGTGKEVLARALHQLS-----DRKDKRFVAINC---AAIPENLLeSELFGYEKGAFTGAVKQTLGKIEYAHGGT 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 247 LFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPSLAER 320
Cdd:TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPV-DVRIVCATNQDLKRMIAEGTFRedlfyRIAEIsITIPPLRSR 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1589195055 321 PlqEKRELLQ--FLIQEEEKHIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASV 374
Cdd:TIGR02915 316 D--GDAVLLAnaFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV 369
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
151-316 |
2.10e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 151 VVEQCKAAISYPeHGLPILLQGPTGTGKSLIAQLMYQygvemEILSKDSRFMTMNCSEYANNPEMLmtNLFGYkkgsytG 230
Cdd:cd00009 6 AIEALREALELP-PPKNLLLYGPPGTGKTTLARAIAN-----ELFRPGAPFLYLNASDLLEGLVVA--ELFGH------F 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 231 AEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGdndtwyVSNARLIFATTEQPDEVLLKTLLRRIPL 310
Cdd:cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID------RENVRVIGATNRPLLGDLDRALYDRLDI 145
|
....*.
gi 1589195055 311 IVKVPS 316
Cdd:cd00009 146 RIVIPL 151
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
860-943 |
1.28e-11 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 61.50 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 860 EKIIKTIQKELHMKL-SSSVILGLYIHISCLIERLIINKNVTKFEHLETFEKTQTEFiRIVKKAFHDVEQHYNVKIPVSE 938
Cdd:pfam00874 1 EEIIELIEKKLGITFdDDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEF-EIAKKILEILEEELGIELPEDE 79
|
....*
gi 1589195055 939 IGYIY 943
Cdd:pfam00874 80 IGYIA 84
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
833-943 |
4.30e-10 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 63.73 E-value: 4.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 833 NMIKNFSMDNLLSYLTILD--SDKIIDSVEKIIKTIQKELHMKLSSSVILGLYIHISCLIERLIINKNVTKFEHLETFEK 910
Cdd:COG3711 154 ELLSELLSENDLLSLLLLKliPEEDLELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPLLWEIK 233
|
90 100 110
....*....|....*....|....*....|...
gi 1589195055 911 TQTEFiRIVKKAFHDVEQHYNVKIPVSEIGYIY 943
Cdd:COG3711 234 KPKEY-EIAKEILKLIEERLGISLPEDEIGYIA 265
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
164-308 |
5.47e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 5.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 164 HGLPILLQGPTGTGKSLIAQLMYQygvemEILSKDSRFMTMNCSEYANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALA- 242
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALAR-----ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAr 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1589195055 243 --DGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTwyvsNARLIFATteQPDEVLLKTLLRRI 308
Cdd:smart00382 76 klKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEK----NLTVILTT--NDEKDLGPALLRRR 137
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
34-856 |
1.48e-156 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 482.30 E-value: 1.48e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 34 REKLQETLQVECEQLEkdlhwQEERLETLTSSFLSAQFACSRNLISHYMSEFQQKGLVIKTNTRPVYFFWRKSLENRFGV 113
Cdd:COG1221 4 KEKILNYLKELTKNLS-----LEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFLDKEAFEEQFGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 114 ILKAELYETLEDLKNILEKKQQHAFHNLIGANDSLSYVVEQCKAAISYPEHGLPILLQGPTGTGKSLIAQLMYQYGVEME 193
Cdd:COG1221 79 KLKSEYSFVELLAEKENNEEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 194 ILSKDSRFMTMNCSEYANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYH 273
Cdd:COG1221 159 VLPEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 274 MVGDNDTWYVSNARLIFATTEQPDEVLLKTLLRRIPLIVKVPSLAERPLQEKRELLQFLIQEEEKHIQRKISMSDLVFRT 353
Cdd:COG1221 239 RLGETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 354 LERHTFTGNIGELKNVIRASVAKAFLRN-QKDMDDVSLHIYDLSSDLLESTGKDVT-------LYDYDDRAMI--HSEDM 423
Cdd:COG1221 319 LLLYDCPGNIGQLKSDIQLACAKAFLNYiTNKKEEIEITLSDLPENVKKGLLKLKEnreeldkLSEYLEEYLIisPDTEK 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 424 FLSIHKDSRLYNFNAY--LIHKFHTLHAY---EKDLNayldsccLKLEQYIDSLFTEHTYHSPKLDMINHLLTNIMNIVI 498
Cdd:COG1221 399 KLISEEDEYELPYNFYeiIEDKYEELKSEglsEEEIN-------KIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVI 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 499 hKYDLEKFSNNEISMIVHFLNDYMQSLSSINQLKIQNRKEAEE----LQNRIHNEYTNEYNVIGDIWQLISDALSFTPGP 574
Cdd:COG1221 472 -VNVVEIFEEAEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKiinpQLNEIKKKYYEEFILAAEAIKIIEEELKILIPD 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 575 FGYLDLFLFFRYFNREMVASPIP---AVIIAHGYAIASGIAEVANQLLKQRIFDAIDMPIESDFNDTVKKLGEYIKGKEN 651
Cdd:COG1221 551 EEEGFILLLLIELKEEKSLSENVivvVVIAHGGAAASSSMAVVNLLLLEVAVAAIDDPPLEVVDVLIEEKTIVVIINKGK 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 652 YNEVIVMVDMGSLEAIHQKMEGMKRMDIGIINNVTT-----KLALDIGSMILEEMPIQEILKQASHRNQYRYEFVKNRKK 726
Cdd:COG1221 631 GGLLLLLDDGGSLFGIIIIEEEGIIIVTVVIVSTTTvleaaARKKLLELDLDEIIVLEELLKNPLESKKIKISTSKKKKI 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 727 QDAILAVCETGIGTAEKISKLMEDSLPKTvsIAMIPYDYDSLVKSGTTSLVFEKYNVLFTVGTKDPKIFDVPFISLEEMI 806
Cdd:COG1221 711 IVTTIAITTGEAGGILILILIIELLDKDL--ILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLAL 788
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 1589195055 807 EQKSVEKTNSVfesIMRPDQIETFNENMIKNFSMDNLLSYLTILDSDKII 856
Cdd:COG1221 789 KLIILIEILVL---LEILIDKEKIENIIKELLSLLNIIIVLLIIDILILI 835
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
75-948 |
8.21e-140 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 441.09 E-value: 8.21e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 75 RNLISHYMSEFQQKGLVIKTNTRPVYFFWRKSLENRFGVILKAELYETLEDLKNILEKKQQHAFHNLIGANDSLSYVVEQ 154
Cdd:COG3933 32 LLKESTGLLKLLALLLLLKRLSELLLELKKLKKEKKTLKKERSLLEKKKNKLNLKEEKKEKLDFKALIGLSLSLLSAAAA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 155 CKAAISYPEHGLPILLQGPTGTGKSLIAqlMYQYGVEMEILSKDSRFMTMNCSEYANNPEMLMTNLFGYKKGSYTGAEKD 234
Cdd:COG3933 112 AKAAKPPPPLGLLTLLLGGTGGGKSAFA--GYMYAFAAKIAELAAPFVFFNFANAAYNPNLLLLLLFGLGGGAGGGAGAD 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 235 TQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVSNARLIFATTEQPDEVLLKTLLRRIPLI-VK 313
Cdd:COG3933 190 GGGLGGAAGAGGGLLDLLDELPLEGEEQEELFFLLGKGLFRGEGGESRSRRVRIIRATTETEESLLLTTLTRRIRIIiIL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 314 VPSLAERPLQEKRELLQFLIQEEEKHIQRKISMSDLVFRTLERHTFT--GNIGELKNVIRASVAKAFLRN-QKDMDDVSL 390
Cdd:COG3933 270 PRLPILERRERERLLLLLFEFEEEEIRIIKILIVLLLALLLLLLYVNnlGQLGLLKLLIKAAAAAALAKAiKEATIILRL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 391 HIYD---LSSDLLESTGKDVTLYDYDDRAMIHSEDMFLSIHKDSRLYNFNAYLIHKFhtlhAYEKDLNAYLDSCCLKLEQ 467
Cdd:COG3933 350 LSKLlklLLLLLLNERLLLLELKILIEPLDIFFDSSASSDESDESEEDENLYEIIEI----KKKLLLELGIDEEEINIII 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 468 YIDSLFTEHTYHspKLDMINHLLTNIMNIVIhkYDLEKFSNNEISMIVHFLNDYMQS----------LSSINQLKiQNRK 537
Cdd:COG3933 426 EIDIDVHLLKFI--YDDNKNFNKEELAKIVD--EDIINVVEEILELAEKKLGRKFSEnfiyalslhlSSFIERIK-EGKE 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 538 EAEELQNRIHNEYTNEYNVIGDIWQLISDALSFTPGPF--GYLDLFLffRYFNREMVASPIPAVIIAHGYAIASGIAEVA 615
Cdd:COG3933 501 IINPNLNEIKKKYPKEFKVAKEIKELIEQELDIEIPEDevGFLTLFL--VSLNENNESGKVGVIVLAHGYSTASSMAEVA 578
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 616 NQLLKQRIFDAIDMPIESDFNDTVKKLGEYIKGKENYNEVIVMVDMGSLEAIHQKMEGMKRMDIGIINNVTTKLALDIGS 695
Cdd:COG3933 579 NRLLGTNIFEAIDMPLDMSPEDILEKLKEYVKKIDTGKGVLLLVDMGSLTTFGEIIEEETGIPVKTIDMVSTPLVLEAGR 658
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 696 MILEEMPIQEI---LKQASHRNQYRYEFVKNRKKQDAILAVCETGIGTAEKISKLMEDSLPKTVS-IAMIPYDYDSLVK- 770
Cdd:COG3933 659 KALLGMSLEEIyesLKNFNPYEKIISKNKPEKNKKKAIITTCFTGEGTAVKIKDLLEKSLPEDEDnIEIIPLDYLELEEf 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 771 SGTTSLVFEKYNVLFTVGTKDPKIFDVPFISLEEMIEQKSVEKTNSVFESIMRPDQIETFNENMIKNFSMDNLLSYLTIL 850
Cdd:COG3933 739 KEKIDEIFKEYEILAIVGTIDPEIPDIPFISLEDLISGEGIEKLQKLLGGELDAEEIEEINNEIIKNFSLESLIESLTIL 818
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 851 DSDKIIDSVEKIIKTIQKELHMKLSSSVILGLYIHISCLIERLIINKNVTKFEHLETFEKTQTEFIRIVKKAFHDVEQHY 930
Cdd:COG3933 819 NPEKIINELEDFISRLENLLGIKLDNDVKIGLILHIACMIERLVTGEEILTYPNKEEFIQENESEYAVIKEAFSPIEEKY 898
|
890
....*....|....*...
gi 1589195055 931 NVKIPVSEIGYIYECIFQ 948
Cdd:COG3933 899 NIKIPDSEIAYIYDILKN 916
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
141-307 |
1.16e-43 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 156.02 E-value: 1.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 141 LIGANDSLSYVVEQCKAAISYPehgLPILLQGPTGTGKSLIAQLMYQYGVEmeilsKDSRFMTMNCSeyANNPEMLMTNL 220
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLSPR-----ADGPFVAVNCA--AIPEELLESEL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 221 FGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVL 300
Cdd:pfam00158 71 FGHEKGAFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKV-DVRIIAATNRDLEEAV 149
|
....*..
gi 1589195055 301 LKTLLRR 307
Cdd:pfam00158 150 AEGRFRE 156
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
111-377 |
4.14e-30 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 124.31 E-value: 4.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 111 FGVILK----AELYETLED-LKNILEKKQQHAFHNLIGANDSLSYVVEQ-CKAAISypehGLPILLQGPTGTGKSLIAQL 184
Cdd:COG2204 98 FDYLTKpfdlEELLAAVERaLERRRLRRENAEDSGLIGRSPAMQEVRRLiEKVAPS----DATVLITGESGTGKELVARA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 185 MYQYGvemeiLSKDSRFMTMNCSeyANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIF 264
Cdd:COG2204 174 IHRLS-----PRADGPFVAVNCA--AIPEELLESELFGHEKGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 265 LFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPSLAERPlQEKRELLQFLIQEEEK 338
Cdd:COG2204 247 RVLQEREFERVGGNKPIPV-DVRVIAATNRDLEELVEEGRFRedlyyRLNVFpIELPPLRERR-EDIPLLARHFLARFAA 324
|
250 260 270
....*....|....*....|....*....|....*....
gi 1589195055 339 HIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASVAKA 377
Cdd:COG2204 325 ELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILA 363
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
136-377 |
7.34e-29 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 123.47 E-value: 7.34e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 136 HAFHNLIGANDSLSYVVEQCKAAIsypEHGLPILLQGPTGTGKSLIAQLMYQYGVemeilSKDSRFMTMNCseyANNPEM 215
Cdd:COG3284 318 AALAALAGGDPAMRRALRRARRLA---DRDIPVLILGETGTGKELFARAIHAASP-----RADGPFVAVNC---AAIPEE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 216 LM-TNLFGYKKGSYTGAEKD-TQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIfATT 293
Cdd:COG3284 387 LIeSELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPV-DVRLI-AAT 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 294 EQPDEVLLKT------LLRRI-PLIVKVPSLAERplQEKRELLQFLIQEEEKHIQRkISMSDLVFRTLERHTFTGNIGEL 366
Cdd:COG3284 465 HRDLRELVAAgrfredLYYRLnGLTLTLPPLRER--EDLPALIEHLLRELAAGRGP-LRLSPEALALLAAYPWPGNVREL 541
|
250
....*....|.
gi 1589195055 367 KNVIRASVAKA 377
Cdd:COG3284 542 RNVLRTALALA 552
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
118-374 |
6.47e-26 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 112.17 E-value: 6.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 118 ELYETLEDLKNILEKKQQHAFHNLIGANDSLSYVVEQC-KAAISypehGLPILLQGPTGTGKSLIAQLMYQygvemeiLS 196
Cdd:COG3829 117 RLERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAkRVAKS----DSTVLILGESGTGKELFARAIHN-------AS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 197 --KDSRFMTMNC---------SEyannpemlmtnLFGYKKGSYTGAEK-DTQGLLALADGGILFMDEVHGLKPECQEKI- 263
Cdd:COG3829 186 prRDGPFVAVNCaaipenlleSE-----------LFGYEKGAFTGAKKgGKPGLFELADGGTLFLDEIGEMPLSLQAKLl 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 264 -FLfMDKGIYHmVGDNDTWYVsNARLIFATTEQPDEVLLKTLLRR--------IPLivKVPSLAERplqekRE----LLQ 330
Cdd:COG3829 255 rVL-QEKEVRR-VGGTKPIPV-DVRIIAATNRDLEEMVEEGRFREdlyyrlnvIPI--HIPPLRER-----KEdiplLAE 324
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1589195055 331 FLIQEEEKHIQRKI-SMSDLVFRTLERHTFTGNIGELKNVI-RASV 374
Cdd:COG3829 325 HFLEKFNKKYGKNIkGISPEALELLLAYDWPGNVRELENVIeRAVV 370
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
140-374 |
1.71e-21 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 96.66 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 140 NLIGANDSLSYVVEQCKAAISYPEhglPILLQGPTGTGKSLIAQ-LMYqygvemeiLSK--DSRFMTMNCSeyANNPEML 216
Cdd:PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDK---PVLIIGERGTGKELIASrLHY--------LSSrwQGPFISLNCA--ALNENLL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 217 MTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ- 295
Cdd:PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQV-NVRLVCATNADl 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 296 PDEVLLKT----LLRRIPL-IVKVPSLAERplQEKRELL--QFLIQeeekhIQRKISM------SDLVFRTLERHTFTGN 362
Cdd:PRK11608 153 PAMVAEGKfradLLDRLAFdVVQLPPLRER--QSDIMLMaeHFAIQ-----MCRELGLplfpgfTERARETLLNYRWPGN 225
|
250
....*....|..
gi 1589195055 363 IGELKNVIRASV 374
Cdd:PRK11608 226 IRELKNVVERSV 237
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
168-374 |
6.77e-21 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 96.74 E-value: 6.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGvemeiLSKDSRFMTMNCseyANNPEMLM-TNLFGYKKGSYTGAEKDTQGLLALADGGI 246
Cdd:TIGR02915 165 VLLLGESGTGKEVLARALHQLS-----DRKDKRFVAINC---AAIPENLLeSELFGYEKGAFTGAVKQTLGKIEYAHGGT 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 247 LFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPSLAER 320
Cdd:TIGR02915 237 LFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPV-DVRIVCATNQDLKRMIAEGTFRedlfyRIAEIsITIPPLRSR 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1589195055 321 PlqEKRELLQ--FLIQEEEKHIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASV 374
Cdd:TIGR02915 316 D--GDAVLLAnaFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV 369
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
113-372 |
3.74e-20 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 95.26 E-value: 3.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 113 VILKAElYETLEDLKNiLEKKQQHAFHNLIGANDSLSYVVEQCK--AAISypehgLPILLQGPTGTGKSLIAQLMYQYGv 190
Cdd:COG3283 180 VTLKSA-ARLGEQLQA-LQVNDDSGFDHIVASSPKMRQVIRQAKkmAMLD-----APLLIQGETGTGKELLARACHLAS- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 191 emeiLSKDSRFMTMNCseyANNPEMLM-TNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDK 269
Cdd:COG3283 252 ----PRGDKPFLALNC---AALPDDVAeSELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQD 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 270 GIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIP-LIVKVPSLAER-----PLQEkrellQFLIQEEEK 338
Cdd:COG3283 325 GTFRRVGEEQEVKV-DVRVICATQKDLAELVQEGEFRedlyyRLNvLTLTLPPLRERksdilPLAE-----HFVARFSQQ 398
|
250 260 270
....*....|....*....|....*....|....*
gi 1589195055 339 HIQRKISMSDLVFRTLERHTFTGNIGELKNVI-RA 372
Cdd:COG3283 399 LGRPRPRLSPDLVDFLQSYPWPGNVRQLENALyRA 433
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
168-374 |
1.20e-18 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 89.70 E-value: 1.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGVEmeilsKDSRFMTMNCSeyANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALADGGIL 247
Cdd:PRK10365 165 VLIHGDSGTGKELVARAIHASSAR-----SEKPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 248 FMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ-PDEV----LLKTLLRRIPLI-VKVPSLAERp 321
Cdd:PRK10365 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISV-DVRLIAATHRDlAAEVnagrFRQDLYYRLNVVaIEVPSLRQR- 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1589195055 322 lQEKRELL--QFLIQEEEKHIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASV 374
Cdd:PRK10365 316 -REDIPLLagHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
138-374 |
7.96e-18 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 88.73 E-value: 7.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 138 FHNLIGANDSLSYVVEQCKAAisyPEHGLPILLQGPTGTGKSLIAQLMYQygvemeiLS--KDSRFMTMNCSeyANNPEM 215
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMV---AQSDSTVLILGETGTGKELIARAIHN-------LSgrNNRRMVKMNCA--AMPAGL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 216 LMTNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ 295
Cdd:PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT-DVRLIAATNRD 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 296 -----PDEVLLKTLLRRIPLI-VKVPSLAERPlQEKRELLQFLIQEEEKHIQRKI-SMSDLVFRTLERHTFTGNIGELKN 368
Cdd:PRK15429 522 lkkmvADREFRSDLYYRLNVFpIHLPPLRERP-EDIPLLVKAFTFKIARRMGRNIdSIPAETLRTLSNMEWPGNVRELEN 600
|
....*.
gi 1589195055 369 VIRASV 374
Cdd:PRK15429 601 VIERAV 606
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
168-374 |
7.78e-17 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 84.51 E-value: 7.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYqYGVEmeilSKDSRFMTMNCseyANNPEMLM-TNLFGYKKGSYTGAEKDTQGLLALADGGI 246
Cdd:PRK11361 169 VLISGESGTGKELIARAIH-YNSR----RAKGPFIKVNC---AALPESLLeSELFGHEKGAFTGAQTLRQGLFERANEGT 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 247 LFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPSLAER 320
Cdd:PRK11361 241 LLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKV-DIRIIAATNRDLQAMVKEGTFRedlfyRLNVIhLILPPLRDR 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1589195055 321 PlQEKRELLQFLIQEEEKHIQRKI-SMSDLVFRTLERHTFTGNIGELKNVI-RASV 374
Cdd:PRK11361 320 R-EDISLLANHFLQKFSSENQRDIiDIDPMAMSLLTAWSWPGNIRELSNVIeRAVV 374
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
136-408 |
2.31e-16 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 83.20 E-value: 2.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 136 HAFHNLIGANDSLSYVVEQC-KAAIsypeHGLPILLQGPTGTGKSLIAqlmyqYGVEMEILSKDSRFMTMNCseyANNPE 214
Cdd:PRK10820 201 SAFSQIVAVSPKMRQVVEQArKLAM----LDAPLLITGDTGTGKDLLA-----YACHLRSPRGKKPFLALNC---ASIPD 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 215 MLM-TNLFGYKKGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATT 293
Cdd:PRK10820 269 DVVeSELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHV-DVRVICATQ 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 294 EQPDEVLLKTLLR-----RIP-LIVKVPSLAERPlQEKRELLQFLIQE--EEKHIQR-KISmSDLVfRTLERHTFTGNIG 364
Cdd:PRK10820 348 KNLVELVQKGEFRedlyyRLNvLTLNLPPLRDRP-QDIMPLTELFVARfaDEQGVPRpKLA-ADLN-TVLTRYGWPGNVR 424
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1589195055 365 ELKNVIRASVAK---AFLRNQkdmdDVSLHIYD----LSSDLLESTGKDVT 408
Cdd:PRK10820 425 QLKNAIYRALTQlegYELRPQ----DILLPDYDaavaVGEDAMEGSLDEIT 471
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
168-375 |
9.71e-16 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 81.04 E-value: 9.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGVEmeilsKDSRFMTMNCSEYannPEMLM-TNLFGYKKGSYTGAEKDTQGLLALADGGI 246
Cdd:PRK15115 160 VLINGQSGTGKEILAQAIHNASPR-----ASKPFIAINCGAL---PEQLLeSELFGHARGAFTGAVSNREGLFQAAEGGT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 247 LFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPSLAER 320
Cdd:PRK15115 232 LFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDI-DVRIISATHRDLPKAMARGEFRedlyyRLNVVsLKIPALAER 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1589195055 321 PlqEKRELL--QFLIQEEEKHIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASVA 375
Cdd:PRK15115 311 T--EDIPLLanHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
151-316 |
2.10e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 151 VVEQCKAAISYPeHGLPILLQGPTGTGKSLIAQLMYQygvemEILSKDSRFMTMNCSEYANNPEMLmtNLFGYkkgsytG 230
Cdd:cd00009 6 AIEALREALELP-PPKNLLLYGPPGTGKTTLARAIAN-----ELFRPGAPFLYLNASDLLEGLVVA--ELFGH------F 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 231 AEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGdndtwyVSNARLIFATTEQPDEVLLKTLLRRIPL 310
Cdd:cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRID------RENVRVIGATNRPLLGDLDRALYDRLDI 145
|
....*.
gi 1589195055 311 IVKVPS 316
Cdd:cd00009 146 RIVIPL 151
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
136-420 |
3.22e-13 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 73.56 E-value: 3.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 136 HAFHNLIGANDSLSYVVEQCKAAIsypEHGLPILLQGPTGTGKSLIAQLMYQygvemEILSKDSRFMTMNCSEYanNPEM 215
Cdd:PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA---KSSFPVLLCGEEGVGKALLAQAIHN-----ESERAAGPYIAVNCQLY--PDEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 216 LMTNLFGykkGSYTGAEKDTQGLLALADGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ 295
Cdd:PRK11388 392 LAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPV-DVRVIATTTAD 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 296 PDEVLLKTLLRRiPLIVKVPS--LAERPLQEKRELLQFLIQEE----EKHIQRKISMSDLVFRTLERHTFTGNIGELKNV 369
Cdd:PRK11388 468 LAMLVEQNRFSR-QLYYALHAfeITIPPLRMRREDIPALVNNKlrslEKRFSTRLKIDDDALARLVSYRWPGNDFELRSV 546
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1589195055 370 IRasvaKAFL---RNQKDMDDVSLHIYdLSSDLLESTGK----DVTLYDYDDRAMIHS 420
Cdd:PRK11388 547 IE----NLALssdNGRIRLSDLPEHLF-TEQATDDVSATrlstSLSLAELEKEAIINA 599
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
598-710 |
3.36e-13 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 67.25 E-value: 3.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 598 AVIIAHGyAIASGIAEVANQLL-KQRIFDAIDMPIESDFNDTVKKLGEYIKGKENYNEVIVMVDM--GSLEAIHQK-MEG 673
Cdd:cd00006 3 IIIATHG-GFASGLLNSAEMILgEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARlSME 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1589195055 674 MKRMDigIINNVTTKLALDIGSMILEEMPIQEILKQA 710
Cdd:cd00006 82 HPPVE--VIAGVNLPMLLEAARARELGLSLDELVENA 116
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
168-408 |
4.90e-13 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 72.60 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGVEMEilskdSRFMTMNCSeyANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALADGGIL 247
Cdd:PRK10923 164 VLINGESGTGKELVAHALHRHSPRAK-----APFIALNMA--AIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 248 FMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQPDEVLLKTLLR-----RIPLI-VKVPslaerP 321
Cdd:PRK10923 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKV-DVRIIAATHQNLEQRVQEGKFRedlfhRLNVIrVHLP-----P 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 322 LQEKRE----LLQFLIQEEEKH--IQRKISMSDlVFRTLERHTFTGNIGELKNVIR-ASVAKAflrNQKDMddvslhIYD 394
Cdd:PRK10923 311 LRERREdiprLARHFLQVAARElgVEAKLLHPE-TEAALTRLAWPGNVRQLENTCRwLTVMAA---GQEVL------IQD 380
|
250
....*....|....
gi 1589195055 395 LSSDLLESTGKDVT 408
Cdd:PRK10923 381 LPGELFESTVPEST 394
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
166-398 |
1.79e-12 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 70.97 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 166 LPILLQGPTGTGKSLIAQLMYQygvemeiLSKDSR--FMTMNCseyANNPEMLM-TNLFGYKKGSYTGAEKDTQGLLALA 242
Cdd:PRK05022 211 LNVLILGETGVGKELVARAIHA-------ASPRADkpLVYLNC---AALPESLAeSELFGHVKGAFTGAISNRSGKFELA 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 243 DGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVsNARLIFATTEQ-PDEVLLKT----LLRRI---PLIvkV 314
Cdd:PRK05022 281 DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRV-DVRVIAATNRDlREEVRAGRfradLYHRLsvfPLS--V 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 315 PSLAERPlqekRELLQ----FLiqEEekhIQRKISMSDLVF-----RTLERHTFTGNIGELKNVI-RASVaKAFLRNQKd 384
Cdd:PRK05022 358 PPLRERG----DDVLLlagyFL--EQ---NRARLGLRSLRLspaaqAALLAYDWPGNVRELEHVIsRAAL-LARARGAG- 426
|
250
....*....|....
gi 1589195055 385 mDDVSLHIYDLSSD 398
Cdd:PRK05022 427 -RIVTLEAQHLDLP 439
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
149-252 |
3.52e-12 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 70.13 E-value: 3.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 149 SYVVEQCKAAIS-YPEHGLPILLQGPTGTGKSLIAQLMYQYGVEMEILSKDSR---FMTMNCSEYANNpeMLMTNLFGYK 224
Cdd:PRK15424 225 SPQMEQVRQTILlYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKshpFVAVNCGAIAES--LLEAELFGYE 302
|
90 100
....*....|....*....|....*....
gi 1589195055 225 KGSYTGAEKDTQ-GLLALADGGILFMDEV 252
Cdd:PRK15424 303 EGAFTGSRRGGRaGLFEIAHGGTLFLDEI 331
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
860-943 |
1.28e-11 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 61.50 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 860 EKIIKTIQKELHMKL-SSSVILGLYIHISCLIERLIINKNVTKFEHLETFEKTQTEFiRIVKKAFHDVEQHYNVKIPVSE 938
Cdd:pfam00874 1 EEIIELIEKKLGITFdDDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEF-EIAKKILEILEEELGIELPEDE 79
|
....*
gi 1589195055 939 IGYIY 943
Cdd:pfam00874 80 IGYIA 84
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
833-943 |
4.30e-10 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 63.73 E-value: 4.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 833 NMIKNFSMDNLLSYLTILD--SDKIIDSVEKIIKTIQKELHMKLSSSVILGLYIHISCLIERLIINKNVTKFEHLETFEK 910
Cdd:COG3711 154 ELLSELLSENDLLSLLLLKliPEEDLELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPLLWEIK 233
|
90 100 110
....*....|....*....|....*....|...
gi 1589195055 911 TQTEFiRIVKKAFHDVEQHYNVKIPVSEIGYIY 943
Cdd:COG3711 234 KPKEY-EIAKEILKLIEERLGISLPEDEIGYIA 265
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
164-308 |
5.47e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 5.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 164 HGLPILLQGPTGTGKSLIAQLMYQygvemEILSKDSRFMTMNCSEYANNPEMLMTNLFGYKKGSYTGAEKDTQGLLALA- 242
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALAR-----ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAr 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1589195055 243 --DGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTwyvsNARLIFATteQPDEVLLKTLLRRI 308
Cdd:smart00382 76 klKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEK----NLTVILTT--NDEKDLGPALLRRR 137
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
167-307 |
1.80e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 48.06 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 167 PILLQGPTGTGKSLIAQLMyqygveMEILSKDSRFmTMNCSEYANNPEM-----LMTNLFGYKKGSYTGAEKdtqgllal 241
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL------AAALSNRPVF-YVQLTRDTTEEDLfgrrnIDPGGASWVDGPLVRAAR-------- 65
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1589195055 242 aDGGILFMDEVHGLKPECQEKIFLFMDKGIYHMvgDNDTWYVS----NARLIFATTEQPDEV--LLKTLLRR 307
Cdd:pfam07728 66 -EGEIAVLDEINRANPDVLNSLLSLLDERRLLL--PDGGELVKaapdGFRLIATMNPLDRGLneLSPALRSR 134
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
845-942 |
3.77e-06 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 50.63 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 845 SYLTILDSDKIIDSVEKIIKTIQKELHMKLSSSVIL--GLYIHISCLIERLIINKNVTKfEHLETFEKTQTEFIRIVKKA 922
Cdd:COG3711 277 NELSEIITLEITKLIKEIINIIEEELGIDLDEDSLLyeRLITHLKPAINRLKYGIPIRN-PLLEEIKEKYPEAFELAKKI 355
|
90 100
....*....|....*....|
gi 1589195055 923 FHDVEQHYNVKIPVSEIGYI 942
Cdd:COG3711 356 AKYLEKELGIEIPEDEIGYL 375
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
168-403 |
4.12e-05 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 46.76 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQLMYQYGvemeiLSKDSRFMTMNCseyANNPEMLMTNLfgykkgsytgaekdtqgllaladggil 247
Cdd:COG3604 118 VAILGETGTGKELVANAIHELS-----PRADKPFVKVNC---AALPESLLESL--------------------------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 248 fmdevhglkpecQEKIFlfmdkgiyHMVGDNDTWYVsNARLIFATTEQ-PDEVLLKT----LLRRIPLI-VKVPSLAERP 321
Cdd:COG3604 163 ------------QEGEF--------ERVGGDETIKV-DVRIIAATNRDlEEEVAEGRfredLYYRLNVFpIRLPPLRERR 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 322 lqEKRELL--QFLIQEEEKHIQRKISMSDLVFRTLERHTFTGNIGELKNVIRASVAKAflrnqkdmDDVSLHIYDLSSDL 399
Cdd:COG3604 222 --EDIPLLaeHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILA--------EGGVLDADDLAPGS 291
|
....
gi 1589195055 400 LEST 403
Cdd:COG3604 292 REAL 295
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
168-315 |
1.75e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 42.20 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAqlmyqygvemEILSKDS--RFMTMNCSEyannpemlmtnlfgyKKGSYTGA-EKDTQGLLALA-- 242
Cdd:pfam00004 1 LLLYGPPGTGKTTLA----------KAVAKELgaPFIEISGSE---------------LVSKYVGEsEKRLRELFEAAkk 55
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1589195055 243 -DGGILFMDEVHGLKPECQEKIFLFMDKGIYHMVGDNDTWYVSNARLIF-ATTEQPDEvLLKTLLRRIPLIVKVP 315
Cdd:pfam00004 56 lAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSNSKVIViAATNRPDK-LDPALLGRFDRIIEFP 129
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
800-943 |
2.39e-04 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 45.10 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 800 ISLEEMIEQKSVE-----KTNSVFESIMRpDQIETFNENMIKNFSMDNLLSYLTILDSDKIIDSVEKIIKTIQKELHMKL 874
Cdd:COG1221 411 YNFYEIIEDKYEElksegLSEEEINKIIS-KDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEEAEKKLLRYN 489
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1589195055 875 SSSVILGLYIHISCLIERLIINKNVTKFEHLETFEKTQTEFIRIVKKAFHDVEQHYNVkIPVSEIGYIY 943
Cdd:COG1221 490 SSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKIL-IPDEEEGFIL 557
|
|
| AAA_7 |
pfam12775 |
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ... |
163-228 |
2.94e-04 |
|
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).
Pssm-ID: 463698 [Multi-domain] Cd Length: 179 Bit Score: 42.76 E-value: 2.94e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1589195055 163 EHGLPILLQGPTGTGKSLIAQLMyqygveMEILSKDSR-FMTMNCSeYANNPEMLMTNLFGY----KKGSY 228
Cdd:pfam12775 29 KNGKPVLLVGPTGTGKTVIIQNL------LRKLDKEKYlPLFINFS-AQTTSNQTQDIIESKlekrRKGVY 92
|
|
| ManX |
COG2893 |
Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and ... |
599-661 |
5.75e-04 |
|
Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism];
Pssm-ID: 442138 [Multi-domain] Cd Length: 126 Bit Score: 40.89 E-value: 5.75e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1589195055 599 VIIAHGyAIASGIAEVANQLL-KQRIFDAIDMPIESDFNDTVKKLGEYIKGKENYNEVIVMVDM 661
Cdd:COG2893 2 VIATHG-PLAEGLLSSAEMILgEQENVEAVDLYPGDDPEDLREKLEEAIAELDSGDGVLILTDL 64
|
|
| EIIA-man |
pfam03610 |
PTS system fructose IIA component; |
599-663 |
9.36e-04 |
|
PTS system fructose IIA component;
Pssm-ID: 427399 [Multi-domain] Cd Length: 113 Bit Score: 39.93 E-value: 9.36e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1589195055 599 VIIAHGyAIASGIAEVANQLLK-QRIFDAIDMPIESDFNDTVKKLGEYIKGKENYNEVIVMVDMGS 663
Cdd:pfam03610 3 VIVSHG-ELAEGLLELAEMMAGeQENVIAVGGTPGESIGTSFEKIVEAIENLDSGDGVLVLVDLGG 67
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
168-314 |
1.26e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 40.34 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1589195055 168 ILLQGPTGTGKSLIAQ-LMYQYGVEMeILSKDSRFMtmncSEYANNPEMLMTNLFgykkgsyTGAEKdtqgllalADGGI 246
Cdd:cd19481 29 ILLYGPPGTGKTLLAKaLAGELGLPL-IVVKLSSLL----SKYVGESEKNLRKIF-------ERARR--------LAPCI 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1589195055 247 LFMDEVHGL--------KPECQEKIFLFMdkgIYHMVGDNDTWYVsnarLIFATTEQPDEvLLKTLLR--RIPLIVKV 314
Cdd:cd19481 89 LFIDEIDAIgrkrdssgESGELRRVLNQL---LTELDGVNSRSKV----LVIAATNRPDL-LDPALLRpgRFDEVIEF 158
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