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Conserved domains on  [gi|1583408837|gb|TBK40716|]
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hypothetical protein EY797_04190 [Salmonella enterica subsp. enterica serovar Heidelberg]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10110 super family cl32465
PTS maltose transporter subunit IICB;
1-14 7.69e-04

PTS maltose transporter subunit IICB;


The actual alignment was detected with superfamily member PRK10110:

Pssm-ID: 182245 [Multi-domain]  Cd Length: 530  Bit Score: 32.78  E-value: 7.69e-04
                          10
                  ....*....|....
gi 1583408837   1 MGGTENIVSLDNCI 14
Cdd:PRK10110  459 LGGADNIVSLDNCI 472
 
Name Accession Description Interval E-value
PRK10110 PRK10110
PTS maltose transporter subunit IICB;
1-14 7.69e-04

PTS maltose transporter subunit IICB;


Pssm-ID: 182245 [Multi-domain]  Cd Length: 530  Bit Score: 32.78  E-value: 7.69e-04
                          10
                  ....*....|....
gi 1583408837   1 MGGTENIVSLDNCI 14
Cdd:PRK10110  459 LGGADNIVSLDNCI 472
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
2-14 9.41e-04

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 31.63  E-value: 9.41e-04
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:COG1264   12 GGKENIVSVDHCA 24
PTS_EIIB pfam00367
phosphotransferase system, EIIB;
2-14 1.54e-03

phosphotransferase system, EIIB;


Pssm-ID: 459785 [Multi-domain]  Cd Length: 32  Bit Score: 30.03  E-value: 1.54e-03
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:pfam00367  8 GGKENIKSVDHCA 20
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
 2-14 1.55e-03

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 30.96  E-value: 1.55e-03
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:cd00212   12 GGKENIVSLDHCA 24
 
Name Accession Description Interval E-value
PRK10110 PRK10110
PTS maltose transporter subunit IICB;
1-14 7.69e-04

PTS maltose transporter subunit IICB;


Pssm-ID: 182245 [Multi-domain]  Cd Length: 530  Bit Score: 32.78  E-value: 7.69e-04
                          10
                  ....*....|....
gi 1583408837   1 MGGTENIVSLDNCI 14
Cdd:PRK10110  459 LGGADNIVSLDNCI 472
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
2-14 9.41e-04

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 31.63  E-value: 9.41e-04
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:COG1264   12 GGKENIVSVDHCA 24
PTS_EIIB pfam00367
phosphotransferase system, EIIB;
2-14 1.54e-03

phosphotransferase system, EIIB;


Pssm-ID: 459785 [Multi-domain]  Cd Length: 32  Bit Score: 30.03  E-value: 1.54e-03
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:pfam00367  8 GGKENIKSVDHCA 20
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
 2-14 1.55e-03

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 30.96  E-value: 1.55e-03
                         10
                 ....*....|...
gi 1583408837  2 GGTENIVSLDNCI 14
Cdd:cd00212   12 GGKENIVSLDHCA 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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