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Conserved domains on  [gi|1581859888|gb|TAW43243|]
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sporulation protein [Rhizobium leguminosarum]

Protein Classification

SPOR domain-containing protein( domain architecture ID 10523510)

SPOR domain-containing protein similar to Pseudomonas aeruginosa endolytic peptidoglycan transglycosylase RlpA

CATH:  3.30.70.1070
Gene Ontology:  GO:0042834
PubMed:  28396350|26305949
SCOP:  4002705

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 1010-1086 1.93e-09

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


:

Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 55.06  E-value: 1.93e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1581859888 1010 SAGGYGIQIASLPSEDEAtksyanlsKKFASVLGGRSHEIRRADIAGKGTFYRVRI-PAGSKDEAAALCEQYRAAGGS 1086
Cdd:pfam05036    1 ASGGYYVQLGAFSNEANA--------EALAAKLRAKGFAAYVAVTSKGGGLYRVRVgPFASREEARAALKKLKALAGL 70
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 815-992 6.56e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 6.56e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  815 DADKTPSVSPRKVRTMIVKPDGTLVAReepspvdQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPP 894
Cdd:PHA03247  2703 PPPPTPEPAPHALVSATPLPPGPAAAR-------QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  895 VGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATAdTAPIPTARPADQPVNVVG 974
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP-TAPPPPPGPPPPSLPLGG 2854

                          170       180
                   ....*....|....*....|
gi 1581859888  975 TVTEKGNV--RPTTQQPKTT 992
Cdd:PHA03247  2855 SVAPGGDVrrRPPSRSPAAK 2874
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
347-500 3.66e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  347 PVPQRANPAPVSPQPASIEAAPVPAAPAAAESVQSEVIAPPPLAAAPVRpapvePAPVYAQAVRPVAPQLAEVVTPQPAA 426
Cdd:PRK12323   405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-----PAAAPAAAARPAAAGPRPVAAAAAAA 479

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581859888  427 TAY-SPAPQPVPEADDPFAGHDFELDLAGIELELTDLDFSEPSEPVPQPEPPAPAPQQAAAVVPRPAPVFAPEPP 500
Cdd:PRK12323   480 PARaAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA 554
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 39-250 7.07e-03

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 7.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888   39 EPRVAANTVTETARREPALDLEDELGREFDRYDSPRplaelDRPAEPISDDVTPEDYVEPVLDASPAAEHAEAPEPVSVS 118
Cdd:PRK10263   355 QPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPA-----VQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  119 VAAVEVEEAALPAAGN---ADTSAADWAEQLSPEPDASVQSAFGGARDLI----EELELSIGAAPVSSLAQPAKAPQWSA 191
Cdd:PRK10263   430 QQPYYAPAPEQPVAGNawqAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQqpqpVEQQPVVEPEPVVEETKPARPPLYYF 509

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1581859888  192 ASIRlplaNFHAPRREEPVVLPEPVPETVAAPVAEAPSADLPAVEPQPVIEPPALVAAV 250
Cdd:PRK10263   510 EEVE----EKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL 564
 
Name Accession Description Interval E-value
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 1010-1086 1.93e-09

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 55.06  E-value: 1.93e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1581859888 1010 SAGGYGIQIASLPSEDEAtksyanlsKKFASVLGGRSHEIRRADIAGKGTFYRVRI-PAGSKDEAAALCEQYRAAGGS 1086
Cdd:pfam05036    1 ASGGYYVQLGAFSNEANA--------EALAAKLRAKGFAAYVAVTSKGGGLYRVRVgPFASREEARAALKKLKALAGL 70
PHA03247 PHA03247
large tegument protein UL36; Provisional
 815-992 6.56e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 6.56e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  815 DADKTPSVSPRKVRTMIVKPDGTLVAReepspvdQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPP 894
Cdd:PHA03247  2703 PPPPTPEPAPHALVSATPLPPGPAAAR-------QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  895 VGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATAdTAPIPTARPADQPVNVVG 974
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP-TAPPPPPGPPPPSLPLGG 2854

                          170       180
                   ....*....|....*....|
gi 1581859888  975 TVTEKGNV--RPTTQQPKTT 992
Cdd:PHA03247  2855 SVAPGGDVrrRPPSRSPAAK 2874
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
881-1089 1.18e-03

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 41.54  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  881 PSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPI 960
Cdd:COG3087      1 PETALAAILLAAAALLLELSAEAAAAASDNLRLAAGSAAAPALAEDALVASAAKAGLAETGAKAGAILAAAALAALNAAA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  961 PTARPADQPVNVVGTVTEKGNVRPTTQQPKTTEVAAAAPVAAKPqqqaasaggYGIQIASLPSEDEATKSYANLSKKfas 1040
Cdd:COG3087     81 AALAAASAAAAAAAAPAAAAAEAAAAPAGMAKKEAAAAPAAKKP---------YYVQVGAFRSRANAERLRARLALL--- 148

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1581859888 1041 vlgGRSHEIRRADIaGKGTFYRVRI-PAGSKDEAAALCEQYRAAGGSCLI 1089
Cdd:COG3087    149 ---GLEARVVEVEV-GGGTWYRVRVgPFSSRAEAEKAREKLKAAGIDALV 194
DUF4813 pfam16072
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ...
 849-934 2.52e-03

Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.


Pssm-ID: 435117 [Multi-domain]  Cd Length: 288  Bit Score: 41.28  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  849 QPTPSAEATPSAPATQSAQAMPSAQAmPPLTAPSTPSAQSTPpVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPL 928
Cdd:pfam16072  168 PAAPAAPAYPVAPAAYPAQAPAAAPA-PAPGAPQTPLAPLNP-VAAAPAAAAGAAAAPVVAAAAPAAAAPPPPAPAAPPA 245


                   ....*.
gi 1581859888  929 AGSADA 934
Cdd:pfam16072  246 DAAPPA 251
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
347-500 3.66e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  347 PVPQRANPAPVSPQPASIEAAPVPAAPAAAESVQSEVIAPPPLAAAPVRpapvePAPVYAQAVRPVAPQLAEVVTPQPAA 426
Cdd:PRK12323   405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-----PAAAPAAAARPAAAGPRPVAAAAAAA 479

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581859888  427 TAY-SPAPQPVPEADDPFAGHDFELDLAGIELELTDLDFSEPSEPVPQPEPPAPAPQQAAAVVPRPAPVFAPEPP 500
Cdd:PRK12323   480 PARaAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA 554
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 953-1085 5.79e-03

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 38.22  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  953 ATADTAPIPTARPADQPVNVVGTVTEKGNVRPTTQQPKTTEVAAAapvaaKPQQQAASAGGYGIQIASLPSEDEATKSYA 1032
Cdd:COG3147     10 AAAAAPAAPAAAAAPAPAAAAAAAAPKPAAKPAAPKPAAAAAAAP-----AAKAAAPAGGGWVVQLGAFSNEDNAKELVA 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1581859888 1033 NLSKKfasvlgGRSHEIRRADiAGKGTFYRVRI-PAGSKDEAAALCEQYRAAGG 1085
Cdd:COG3147     85 KLRAA------GYPAYTEPVT-TGGGTLYRVRVgPFASRAEAEAALAKLKKLTG 131
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 39-250 7.07e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 7.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888   39 EPRVAANTVTETARREPALDLEDELGREFDRYDSPRplaelDRPAEPISDDVTPEDYVEPVLDASPAAEHAEAPEPVSVS 118
Cdd:PRK10263   355 QPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPA-----VQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  119 VAAVEVEEAALPAAGN---ADTSAADWAEQLSPEPDASVQSAFGGARDLI----EELELSIGAAPVSSLAQPAKAPQWSA 191
Cdd:PRK10263   430 QQPYYAPAPEQPVAGNawqAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQqpqpVEQQPVVEPEPVVEETKPARPPLYYF 509

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1581859888  192 ASIRlplaNFHAPRREEPVVLPEPVPETVAAPVAEAPSADLPAVEPQPVIEPPALVAAV 250
Cdd:PRK10263   510 EEVE----EKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL 564
 
Name Accession Description Interval E-value
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 1010-1086 1.93e-09

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 55.06  E-value: 1.93e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1581859888 1010 SAGGYGIQIASLPSEDEAtksyanlsKKFASVLGGRSHEIRRADIAGKGTFYRVRI-PAGSKDEAAALCEQYRAAGGS 1086
Cdd:pfam05036    1 ASGGYYVQLGAFSNEANA--------EALAAKLRAKGFAAYVAVTSKGGGLYRVRVgPFASREEARAALKKLKALAGL 70
PHA03247 PHA03247
large tegument protein UL36; Provisional
 815-992 6.56e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 60.72  E-value: 6.56e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  815 DADKTPSVSPRKVRTMIVKPDGTLVAReepspvdQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPP 894
Cdd:PHA03247  2703 PPPPTPEPAPHALVSATPLPPGPAAAR-------QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  895 VGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATAdTAPIPTARPADQPVNVVG 974
Cdd:PHA03247  2776 AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP-TAPPPPPGPPPPSLPLGG 2854

                          170       180
                   ....*....|....*....|
gi 1581859888  975 TVTEKGNV--RPTTQQPKTT 992
Cdd:PHA03247  2855 SVAPGGDVrrRPPSRSPAAK 2874
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 840-1007 7.10e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 53.33  E-value: 7.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  840 AREEPSPvDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPv 919
Cdd:PRK07994   362 AAPLPEP-EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK- 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  920 EPAPVQPPLAGSAD-AQAANPAPVAPPVRPVKTAATADTAPIPTARPADQPVNVVGTVTEkgnVRPTTQQPKTTEVAAAA 998
Cdd:PRK07994   440 KSEPAAASRARPVNsALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA---LKKALEHEKTPELAAKL 516


                   ....*....
gi 1581859888  999 PVAAKPQQQ 1007
Cdd:PRK07994   517 AAEAIERDP 525
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 844-934 9.35e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 49.81  E-value: 9.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  844 PSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQS-TPPVPPVGGTAASFPARAEVASADARSAAPVEPA 922
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETaTPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEK 441

                           90
                   ....*....|..
gi 1581859888  923 PVQPPLAGSADA 934
Cdd:PRK14950   442 PKYTPPAPPKEE 453
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 838-982 1.21e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  838 LVAREEPSPVDQPTPSAEATPSAP-ATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVggtAASFPARAEVASADARSA 916
Cdd:PRK14951   361 LLAFKPAAAAEAAAPAEKKTPARPeAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA---AAPPAPVAAPAAAAPAAA 437

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1581859888  917 APVEPAPVQPPLAGSADAQAANPAPVAPPVRPVktaATADTAPIPTARPADQPVnvvgTVTEKGNV 982
Cdd:PRK14951   438 PAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP---AVASAAPAPAAAPAAARL----TPTEEGDV 496
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 842-934 1.38e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 49.50  E-value: 1.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  842 EEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEP 921
Cdd:PRK12270    34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                           90
                   ....*....|...
gi 1581859888  922 APVQPPLAGSADA 934
Cdd:PRK12270   114 EDEVTPLRGAAAA 126
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 756-956 1.52e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  756 VSSDEAPVDVVQRTLTPESLPEDDENANADDQVTPTAVGETEDPRLLPTQDNADNVSATDADKTPSVSPRKVRTMIVKPD 835
Cdd:PRK07764   593 GAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  836 GTLVAREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARS 915
Cdd:PRK07764   673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1581859888  916 AAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATAD 956
Cdd:PRK07764   753 GAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 838-979 1.53e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 1.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  838 LVAREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAA 917
Cdd:PRK07764   374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGA 453

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1581859888  918 PVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPADQPVNVVGTVTEK 979
Cdd:PRK07764   454 PSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
PRK10905 PRK10905
cell division protein DamX; Validated
 856-1013 2.43e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 44.54  E-value: 2.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  856 ATPSAPATQSAQAMPSAQ---AMPPLT-------APSTPSAQSTPPVPPVGGTAASFPARAE-VASADARSAAPVEPAPV 924
Cdd:PRK10905    51 VQPAPGTTSAEQTAGNTQqdvSLPPISstptqgqTPVATDGQQRVEVQGDLNNALTQPQNQQqLNNVAVNSTLPTEPATV 130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  925 QPPLAGSADAQAANPAPVAPPVR-----------PVKTAATADTAPIPTARPADQPVNVVGTVTEKGNVRPTTQQPKTTE 993
Cdd:PRK10905   131 APVRNGNASRQTAKTQTAERPATtrparkqaviePKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETA 210

                          170       180
                   ....*....|....*....|
gi 1581859888  994 VAAAAPVAAKPQQQAASAGG 1013
Cdd:PRK10905   211 TTAPVQTASPAQTTATPAAG 230
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 801-935 9.03e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 9.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  801 LLPTQDNADNVSATDADKTPSVSPRKVRTMIVKPDGTLVAREEPSPVDQPTPSAEATPSAPATQSA-QAMPSAQAMPPLT 879
Cdd:PRK07764   363 LLPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAApQPAPAPAPAPAPP 442

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1581859888  880 APSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQ 935
Cdd:PRK07764   443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
844-966 1.02e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  844 PSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGgtaasfPARAEVASADARSAAPVEPAP 923
Cdd:PRK07003   377 AGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAA------PAPPATADRGDDAADGDAPVP 450

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1581859888  924 VQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPA 966
Cdd:PRK07003   451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPA 493
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
881-1089 1.18e-03

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 41.54  E-value: 1.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  881 PSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPI 960
Cdd:COG3087      1 PETALAAILLAAAALLLELSAEAAAAASDNLRLAAGSAAAPALAEDALVASAAKAGLAETGAKAGAILAAAALAALNAAA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  961 PTARPADQPVNVVGTVTEKGNVRPTTQQPKTTEVAAAAPVAAKPqqqaasaggYGIQIASLPSEDEATKSYANLSKKfas 1040
Cdd:COG3087     81 AALAAASAAAAAAAAPAAAAAEAAAAPAGMAKKEAAAAPAAKKP---------YYVQVGAFRSRANAERLRARLALL--- 148

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1581859888 1041 vlgGRSHEIRRADIaGKGTFYRVRI-PAGSKDEAAALCEQYRAAGGSCLI 1089
Cdd:COG3087    149 ---GLEARVVEVEV-GGGTWYRVRVgPFSSRAEAEKAREKLKAAGIDALV 194
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 840-966 1.37e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.24  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  840 AREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPV 919
Cdd:PTZ00436   199 AKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPP 278

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1581859888  920 EPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPA 966
Cdd:PTZ00436   279 AKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAA 325
PHA03247 PHA03247
large tegument protein UL36; Provisional
 771-1023 1.72e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  771 TPESLPEDDENANADDQVTPTAVGETEDPRLLPTQDNADNVSATDADKTPSVSPRKVR-----TMIVKPDGTLVAREEPS 845
Cdd:PHA03247  2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAgppapAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  846 PVDQPTPSAEATPSA--PATQSAQAMPSAQAMPPLTAPSTP-----SAQSTPPVPPVGGTAASFPARAEVA-------SA 911
Cdd:PHA03247  2787 AVASLSESRESLPSPwdPADPPAAVLAPAAALPPAASPAGPlppptSAQPTAPPPPPGPPPPSLPLGGSVApggdvrrRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  912 DARSAAPVEPAPVQPP---LAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPADQPVNVVGTVTEKGNVRPTTQQ 988
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPvrrLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1581859888  989 PKTTEVAAAAPVAAKPQQQAASAGGYGIQIASLPS 1023
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
836-1011 2.23e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  836 GTLVAREEPSPVDQPTPSAEA-TPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADAR 914
Cdd:PRK12323   371 GAGPATAAAAPVAQPAPAAAApAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  915 SAAPVE-PAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAP-----IPTARPADQPVN--------VVGTVTEKG 980
Cdd:PRK12323   451 APAPAAaPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweeLPPEFASPAPAQpdaapagwVAESIPDPA 530

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1581859888  981 NVRPTTQQPKTTEVAAAAPVAAKPQQQAASA 1011
Cdd:PRK12323   531 TADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
DUF4813 pfam16072
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ...
 849-934 2.52e-03

Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.


Pssm-ID: 435117 [Multi-domain]  Cd Length: 288  Bit Score: 41.28  E-value: 2.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  849 QPTPSAEATPSAPATQSAQAMPSAQAmPPLTAPSTPSAQSTPpVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPL 928
Cdd:pfam16072  168 PAAPAAPAYPVAPAAYPAQAPAAAPA-PAPGAPQTPLAPLNP-VAAAPAAAAGAAAAPVVAAAAPAAAAPPPPAPAAPPA 245


                   ....*.
gi 1581859888  929 AGSADA 934
Cdd:pfam16072  246 DAAPPA 251
PHA03378 PHA03378
EBNA-3B; Provisional
 803-966 2.69e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.98  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  803 PTQDNADNVSATDADKTPSVSPRKVRTMIVKPDGTLVAREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPS 882
Cdd:PHA03378   676 PSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  883 TPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPT 962
Cdd:PHA03378   756 PPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKR 835


                   ....
gi 1581859888  963 ARPA 966
Cdd:PHA03378   836 GRPS 839
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
347-500 3.66e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  347 PVPQRANPAPVSPQPASIEAAPVPAAPAAAESVQSEVIAPPPLAAAPVRpapvePAPVYAQAVRPVAPQLAEVVTPQPAA 426
Cdd:PRK12323   405 APAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPA-----PAAAPAAAARPAAAGPRPVAAAAAAA 479

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581859888  427 TAY-SPAPQPVPEADDPFAGHDFELDLAGIELELTDLDFSEPSEPVPQPEPPAPAPQQAAAVVPRPAPVFAPEPP 500
Cdd:PRK12323   480 PARaAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA 554
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 840-966 4.28e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 40.70  E-value: 4.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  840 AREEPSPVDQPTPSAEATPS--APATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAA 917
Cdd:PTZ00436   225 AAAAPAKAAAPPAKAAAAPAkaAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAA 304

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1581859888  918 PVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPA 966
Cdd:PTZ00436   305 APAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKA 353
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 840-968 4.58e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 4.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  840 AREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPV 919
Cdd:PRK07764   600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA 679

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1581859888  920 EPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPADQ 968
Cdd:PRK07764   680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 837-977 4.76e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 4.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  837 TLVAREEPSPVDQPTPSAEATP-----SAPATQSAQAMPSAQAMPPLTAPSTP-SAQSTPPVPPVGGTAASFPARAEVAS 910
Cdd:pfam17823  116 AAAASSSPSSAAQSLPAAIAALpseafSAPRAAACRANASAAPRAAIAAASAPhAASPAPRTAASSTTAASSTTAASSAP 195

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1581859888  911 ADARSAAPVEPAPVQPPLAGSADAQAANPAPVAPPVRPVKTAATADTAPIPTARPAdqpvnVVGTVT 977
Cdd:pfam17823  196 TTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPA-----ALATLA 257
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
803-964 5.02e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 5.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  803 PTQDNADNVSATDADKTPSVSPRKVRTMIVKPDGTLVAREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPS 882
Cdd:PRK07003   383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSR 462

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  883 TPSAQSTPPVPPVGGTAASFPARAEVASADARSAAPVEPAPVQPplagSADAQAANPAPVAPPVRPVKTAATADTAPIPT 962
Cdd:PRK07003   463 CDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA----VPDARAPAAASREDAPAAAAPPAPEARPPTPA 538


                   ..
gi 1581859888  963 AR 964
Cdd:PRK07003   539 AA 540
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
848-991 5.39e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.91  E-value: 5.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  848 DQPTPSAEATPSAPA-TQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPvggtaasfPARAEVASADARSAAPVEPAPVQP 926
Cdd:PRK14971   368 DASGGRGPKQHIKPVfTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQ--------SATQPAGTPPTVSVDPPAAVPVNP 439

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581859888  927 PLAGSADAQAanpapvappvrpvktAATADTAPIPTARpadqpVNVVGTVTEKGnVRPTTQQPKT 991
Cdd:PRK14971   440 PSTAPQAVRP---------------AQFKEEKKIPVSK-----VSSLGPSTLRP-IQEKAEQATG 483
PRK10856 PRK10856
cytoskeleton protein RodZ;
853-932 5.49e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.39  E-value: 5.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  853 SAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPV--PPVGGTAASFPARAEVASADARSAAPVEPAPVQPPLAG 930
Cdd:PRK10856   155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVatAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGA 234


                   ..
gi 1581859888  931 SA 932
Cdd:PRK10856   235 AP 236
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 953-1085 5.79e-03

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 38.22  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  953 ATADTAPIPTARPADQPVNVVGTVTEKGNVRPTTQQPKTTEVAAAapvaaKPQQQAASAGGYGIQIASLPSEDEATKSYA 1032
Cdd:COG3147     10 AAAAAPAAPAAAAAPAPAAAAAAAAPKPAAKPAAPKPAAAAAAAP-----AAKAAAPAGGGWVVQLGAFSNEDNAKELVA 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1581859888 1033 NLSKKfasvlgGRSHEIRRADiAGKGTFYRVRI-PAGSKDEAAALCEQYRAAGG 1085
Cdd:COG3147     85 KLRAA------GYPAYTEPVT-TGGGTLYRVRVgPFASRAEAEAALAKLKKLTG 131
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 819-928 6.98e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 6.98e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  819 TPSVSPRKVRTMivkpdGTLVAREEPSPVDQPTPSAEATPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVPPVggt 898
Cdd:PRK14951   388 APAAAPVAQAAA-----APAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET--- 459

                           90       100       110
                   ....*....|....*....|....*....|
gi 1581859888  899 aASFPARAEVASADARSAAPVEPAPVQPPL 928
Cdd:PRK14951   460 -VAIPVRVAPEPAVASAAPAPAAAPAAARL 488
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 39-250 7.07e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 7.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888   39 EPRVAANTVTETARREPALDLEDELGREFDRYDSPRplaelDRPAEPISDDVTPEDYVEPVLDASPAAEHAEAPEPVSVS 118
Cdd:PRK10263   355 QPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPA-----VQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  119 VAAVEVEEAALPAAGN---ADTSAADWAEQLSPEPDASVQSAFGGARDLI----EELELSIGAAPVSSLAQPAKAPQWSA 191
Cdd:PRK10263   430 QQPYYAPAPEQPVAGNawqAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQqpqpVEQQPVVEPEPVVEETKPARPPLYYF 509

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1581859888  192 ASIRlplaNFHAPRREEPVVLPEPVPETVAAPVAEAPSADLPAVEPQPVIEPPALVAAV 250
Cdd:PRK10263   510 EEVE----EKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPL 564
flhF PRK06995
flagellar biosynthesis protein FlhF;
857-971 8.14e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 39.95  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1581859888  857 TPSAPATQSAQAMPSAQAMPPLTAPSTPSAQSTPPVppvggTAASFPARAEVASADARSAAPVEPAPVQPPLAGSADAQa 936
Cdd:PRK06995    52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWL-----VEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAA- 125

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1581859888  937 anpAPVAPPVRPVKTAATADTAPIPTARPADQPVN 971
Cdd:PRK06995   126 ---ENAARRLARAAAAAPRPRVPADAAAAVADAVK 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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