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Conserved domains on  [gi|1581835764|gb|TAW19251|]
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YggT family protein [Rhizobium ruizarguesonis]

Protein Classification

YggT family protein( domain architecture ID 10002377)

YggT family protein similar to integral membrane protein YlmG that might be related to chloroplast and cyanobacterial division processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 11-83 7.66e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.00  E-value: 7.66e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1581835764  11 MFALFQTIDLALNIYTWILIASAIFSWLYAFNVinssnqfvNSVGTFLYNVTEPVLKPIRSRLPNLGGIDISP 83
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGY--------NPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSP 65
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 11-83 7.66e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.00  E-value: 7.66e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1581835764  11 MFALFQTIDLALNIYTWILIASAIFSWLYAFNVinssnqfvNSVGTFLYNVTEPVLKPIRSRLPNLGGIDISP 83
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGY--------NPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSP 65
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 19-83 1.95e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 57.11  E-value: 1.95e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581835764  19 DLALNIYTWILIASAIFSWLyafnvinSSNQFVNSVGTFLYNVTEPVLKPIRSRLPNLGGIDISP 83
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWV-------PPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSP 58
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 11-83 7.66e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 74.00  E-value: 7.66e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1581835764  11 MFALFQTIDLALNIYTWILIASAIFSWLYAFNVinssnqfvNSVGTFLYNVTEPVLKPIRSRLPNLGGIDISP 83
Cdd:COG0762     1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGY--------NPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSP 65
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 19-83 1.95e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 57.11  E-value: 1.95e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1581835764  19 DLALNIYTWILIASAIFSWLyafnvinSSNQFVNSVGTFLYNVTEPVLKPIRSRLPNLGGIDISP 83
Cdd:pfam02325   1 YTLLSLYILLLIIRALLSWV-------PPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSP 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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