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Conserved domains on  [gi|1580854887|gb|TAO25962|]
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RecE [Salmonella enterica subsp. enterica serovar Heidelberg]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK09709 super family cl35886
exodeoxyribonuclease VIII;
1-162 5.87e-63

exodeoxyribonuclease VIII;


The actual alignment was detected with superfamily member PRK09709:

Pssm-ID: 236615 [Multi-domain]  Cd Length: 877  Bit Score: 207.51  E-value: 5.87e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887   1 MEQDTTEHPPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEDISDPNDPRWVHN---- 76
Cdd:PRK09709  417 VEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDADKLLAASRGEFVEGISDPNDPKWVKGiqtr 496
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887  77 NYSASNQGEKEEVVPEGKQP----AAEPEAVTRNA-----DGTFDVSALFLPPSNQ---TEKTEARTERDGETPKESNQQ 144
Cdd:PRK09709  497 DCVYQNQPETEKTSPEMKQPepvvQQEPEIVCNACgqtggDNCPDCGAVMGDATYQetfDEESQVEAKENDPEEMEGAEH 576
                         170
                  ....*....|....*...
gi 1580854887 145 ETAGDTGQEITTDGGSGT 162
Cdd:PRK09709  577 PHNENAGSDPHRDCSDET 594
 
Name Accession Description Interval E-value
PRK09709 PRK09709
exodeoxyribonuclease VIII;
1-162 5.87e-63

exodeoxyribonuclease VIII;


Pssm-ID: 236615 [Multi-domain]  Cd Length: 877  Bit Score: 207.51  E-value: 5.87e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887   1 MEQDTTEHPPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEDISDPNDPRWVHN---- 76
Cdd:PRK09709  417 VEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDADKLLAASRGEFVEGISDPNDPKWVKGiqtr 496
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887  77 NYSASNQGEKEEVVPEGKQP----AAEPEAVTRNA-----DGTFDVSALFLPPSNQ---TEKTEARTERDGETPKESNQQ 144
Cdd:PRK09709  497 DCVYQNQPETEKTSPEMKQPepvvQQEPEIVCNACgqtggDNCPDCGAVMGDATYQetfDEESQVEAKENDPEEMEGAEH 576
                         170
                  ....*....|....*...
gi 1580854887 145 ETAGDTGQEITTDGGSGT 162
Cdd:PRK09709  577 PHNENAGSDPHRDCSDET 594
 
Name Accession Description Interval E-value
PRK09709 PRK09709
exodeoxyribonuclease VIII;
1-162 5.87e-63

exodeoxyribonuclease VIII;


Pssm-ID: 236615 [Multi-domain]  Cd Length: 877  Bit Score: 207.51  E-value: 5.87e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887   1 MEQDTTEHPPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEDISDPNDPRWVHN---- 76
Cdd:PRK09709  417 VEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDADKLLAASRGEFVEGISDPNDPKWVKGiqtr 496
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1580854887  77 NYSASNQGEKEEVVPEGKQP----AAEPEAVTRNA-----DGTFDVSALFLPPSNQ---TEKTEARTERDGETPKESNQQ 144
Cdd:PRK09709  497 DCVYQNQPETEKTSPEMKQPepvvQQEPEIVCNACgqtggDNCPDCGAVMGDATYQetfDEESQVEAKENDPEEMEGAEH 576
                         170
                  ....*....|....*...
gi 1580854887 145 ETAGDTGQEITTDGGSGT 162
Cdd:PRK09709  577 PHNENAGSDPHRDCSDET 594
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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