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Conserved domains on  [gi|1580814531|gb|TAN86840|]
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MAG: hypothetical protein EPN14_00005 [Gallionella sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PbpC super family cl34847
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 16-79 6.51e-04

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG4953:

Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 37.50  E-value: 6.51e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1580814531  16 EPVALAAGAEVDITSPADGARL----DAKAQNKIAYDAALGGDGDHVHVYVDGRQVA--------LLRQRRGTYTL 79
Cdd:COG4953   681 PPLASAAGAAPRIISPPDGARYllppGFPGQQPLPLKLAARGGVGPVYWFLDGEPLGttapghelAWQPGPGFHTL 756
 
Name Accession Description Interval E-value
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 16-79 6.51e-04

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 37.50  E-value: 6.51e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1580814531  16 EPVALAAGAEVDITSPADGARL----DAKAQNKIAYDAALGGDGDHVHVYVDGRQVA--------LLRQRRGTYTL 79
Cdd:COG4953   681 PPLASAAGAAPRIISPPDGARYllppGFPGQQPLPLKLAARGGVGPVYWFLDGEPLGttapghelAWQPGPGFHTL 756
 
Name Accession Description Interval E-value
PbpC COG4953
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
 16-79 6.51e-04

Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443980 [Multi-domain]  Cd Length: 773  Bit Score: 37.50  E-value: 6.51e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1580814531  16 EPVALAAGAEVDITSPADGARL----DAKAQNKIAYDAALGGDGDHVHVYVDGRQVA--------LLRQRRGTYTL 79
Cdd:COG4953   681 PPLASAAGAAPRIISPPDGARYllppGFPGQQPLPLKLAARGGVGPVYWFLDGEPLGttapghelAWQPGPGFHTL 756
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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