hypothetical protein Y87G2A.c - Caenorhabditis elegans
Protein Classification
LITAF-like zinc ribbon domain-containing protein( domain architecture ID 10653845)
LITAF (lipopolysaccharide-induced tumor necrosis factor-alpha factor)-like zinc ribbon domain-containing protein similar to Arabidopsis thaliana GSH-induced LITAF domain protein that acts as a membrane anchor, bringing other regulators of programmed cell death (PCD) to the plasma membrane
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| LITAF | smart00714 | Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), ... |
59-131 | 2.56e-20 | ||
Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins; : Pssm-ID: 197841 Cd Length: 67 Bit Score: 78.52 E-value: 2.56e-20
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| Name | Accession | Description | Interval | E-value | ||
| LITAF | smart00714 | Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), ... |
59-131 | 2.56e-20 | ||
Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins; Pssm-ID: 197841 Cd Length: 67 Bit Score: 78.52 E-value: 2.56e-20
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| zf-LITAF-like | pfam10601 | LITAF-like zinc ribbon domain; Members of this family display a conserved zinc ribbon ... |
57-130 | 5.43e-18 | ||
LITAF-like zinc ribbon domain; Members of this family display a conserved zinc ribbon structure with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure. Pssm-ID: 463165 Cd Length: 68 Bit Score: 72.25 E-value: 5.43e-18
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| Name | Accession | Description | Interval | E-value | ||
| LITAF | smart00714 | Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), ... |
59-131 | 2.56e-20 | ||
Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins; Pssm-ID: 197841 Cd Length: 67 Bit Score: 78.52 E-value: 2.56e-20
|
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| zf-LITAF-like | pfam10601 | LITAF-like zinc ribbon domain; Members of this family display a conserved zinc ribbon ... |
57-130 | 5.43e-18 | ||
LITAF-like zinc ribbon domain; Members of this family display a conserved zinc ribbon structure with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure. Pssm-ID: 463165 Cd Length: 68 Bit Score: 72.25 E-value: 5.43e-18
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| Blast search parameters | ||||
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