NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1453430474|emb|SVT61549|]
View 

lipoprotein [Klebsiella pneumoniae]

Protein Classification

DUF3304 domain-containing protein( domain architecture ID 10570169)

DUF3304 domain-containing protein similar to T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3304 pfam11745
Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown ...
 37-148 5.45e-39

Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown function.


:

Pssm-ID: 463339  Cd Length: 103  Bit Score: 128.62  E-value: 5.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1453430474  37 INHTHWAINHFSVNGQSGVDIIGPWQGGGGAGYFGVPPKWEPGMTVKIEWETGVGYSMDFPGFGDDKKvleWEKkiksQN 116
Cdd:pfam11745   1 YNHTDWYINSFSVNGAGGSNIGGGGGGGGGVCCISLPAKWRPGLKVTVRWEVDPAPNAKIPGGKDGEK---WEA----NY 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1453430474 117 REHSAIVPVPDYnsQKTCGIKIHFLPCDKVKV 148
Cdd:pfam11745  74 RQHEAVVPIPPY--EKTCGLTVHFLPCDQVKV 103
 
Name Accession Description Interval E-value
DUF3304 pfam11745
Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown ...
 37-148 5.45e-39

Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown function.


Pssm-ID: 463339  Cd Length: 103  Bit Score: 128.62  E-value: 5.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1453430474  37 INHTHWAINHFSVNGQSGVDIIGPWQGGGGAGYFGVPPKWEPGMTVKIEWETGVGYSMDFPGFGDDKKvleWEKkiksQN 116
Cdd:pfam11745   1 YNHTDWYINSFSVNGAGGSNIGGGGGGGGGVCCISLPAKWRPGLKVTVRWEVDPAPNAKIPGGKDGEK---WEA----NY 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1453430474 117 REHSAIVPVPDYnsQKTCGIKIHFLPCDKVKV 148
Cdd:pfam11745  74 RQHEAVVPIPPY--EKTCGLTVHFLPCDQVKV 103
 
Name Accession Description Interval E-value
DUF3304 pfam11745
Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown ...
 37-148 5.45e-39

Protein of unknown function (DUF3304); This is a family of bacterial proteins of unknown function.


Pssm-ID: 463339  Cd Length: 103  Bit Score: 128.62  E-value: 5.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1453430474  37 INHTHWAINHFSVNGQSGVDIIGPWQGGGGAGYFGVPPKWEPGMTVKIEWETGVGYSMDFPGFGDDKKvleWEKkiksQN 116
Cdd:pfam11745   1 YNHTDWYINSFSVNGAGGSNIGGGGGGGGGVCCISLPAKWRPGLKVTVRWEVDPAPNAKIPGGKDGEK---WEA----NY 73

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1453430474 117 REHSAIVPVPDYnsQKTCGIKIHFLPCDKVKV 148
Cdd:pfam11745  74 RQHEAVVPIPPY--EKTCGLTVHFLPCDQVKV 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH