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Conserved domains on  [gi|1413098009|emb|SRW96157|]
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flagellar basal body rod protein FlgF [Shigella sonnei]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 7.49e-143

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 400.00  E-value: 7.49e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:PRK12640    1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640   81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRLsaetqaTRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDD 239
Cdd:PRK12640  161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                         250
                  ....*....|..
gi 1413098009 240 NAGRANQLLSMS 251
Cdd:PRK12640  235 NAQAANQLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 7.49e-143

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 400.00  E-value: 7.49e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:PRK12640    1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640   81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRLsaetqaTRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDD 239
Cdd:PRK12640  161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                         250
                  ....*....|..
gi 1413098009 240 NAGRANQLLSMS 251
Cdd:PRK12640  235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 7.63e-141

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 394.88  E-value: 7.63e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:COG4787     1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:COG4787    81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRLSAetqatrGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDD 239
Cdd:COG4787   161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                         250
                  ....*....|..
gi 1413098009 240 NAGRANQLLSMS 251
Cdd:COG4787   235 NDQAANQLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.81e-60

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 189.39  E-value: 3.81e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLS--LPTRTLVTASTPGADMTPGKMDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  82 LQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEA-GPIAVPE-GAEITIAADGTISALNPGDpanTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWGgGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1413098009 159 GRLKLVKATG-SEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQ 230
Cdd:TIGR03506 159 GQIALANFPNpDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 9.94e-19

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 77.69  E-value: 9.94e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1413098009 169 SEVQRGDDGIFRlsaETQATrgPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFR---ETDGA--PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-251 7.49e-143

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 400.00  E-value: 7.49e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:PRK12640    1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12640   81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRLsaetqaTRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDD 239
Cdd:PRK12640  161 RLKLVNPPAAQLTRGDDGLFRT------TDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADE 234

                         250
                  ....*....|..
gi 1413098009 240 NAGRANQLLSMS 251
Cdd:PRK12640  235 NAQAANQLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-251 7.63e-141

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 394.88  E-value: 7.63e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:COG4787     1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:COG4787    81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRLSAetqatrGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDD 239
Cdd:COG4787   161 RLKLVNPDPAQLVKGDDGLFRLKD------GGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADE 234

                         250
                  ....*....|..
gi 1413098009 240 NAGRANQLLSMS 251
Cdd:COG4787   235 NDQAANQLLRLS 246
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-211 1.27e-84

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 251.30  E-value: 1.27e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDV 80
Cdd:PRK12643    1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  81 ALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR 160
Cdd:PRK12643   81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQ 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1413098009 161 LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRvmSGVLEGSNV 211
Cdd:PRK12643  161 IKRVQATAGEMMHGDDGLFHLTPETQQARGAQLPNDPLVK--PGEREHQWL 209
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 4-230 3.81e-60

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 189.39  E-value: 3.81e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   4 AIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVEGLS--LPTRTLVTASTPGADMTPGKMDYTSRPLDVA 81
Cdd:TIGR03506   2 ALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSgsGQVGGGVRTSGVATDFSQGSLQSTGNSLDLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  82 LQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEA-GPIAVPE-GAEITIAADGTISALNPGDpanTVAPV 158
Cdd:TIGR03506  82 ISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLDWGgGPITLPPdAGSVSIGEDGTVSATYSNG---QTVEL 158

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1413098009 159 GRLKLVKATG-SEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQ 230
Cdd:TIGR03506 159 GQIALANFPNpDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-251 1.13e-57

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 183.99  E-value: 1.13e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLN-ALRAVPVEGLSLPTRTLVTASTpgaDMTPGKMDYTSRPLD 79
Cdd:PRK12641    1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFIlAIQNHNVKNLYNSDKKITKEYY---NLSPGTLRYTGRNLD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  80 VALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVG 159
Cdd:PRK12641   78 LFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 160 RLKLVKATGSEVQRGDDGIFRL--SAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSV 237
Cdd:PRK12641  158 SLKLVQLPSQDLIQKENGLFYLkkNNEINKKHTKNIKHSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISMC 237

                         250
                  ....*....|....
gi 1413098009 238 DDNAGRANQLLSMS 251
Cdd:PRK12641  238 DQNTEYANQLININ 251
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-249 4.56e-53

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 172.31  E-value: 4.56e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   5 IYTA-MGAASQTLNQQaVTASNLANASTPGFRAQ-----------------LNALRAVPVEGLSLPTRTLVTASTPgaDM 66
Cdd:COG4786     1 LYTAaSGMLAQQTRLD-VISNNLANVNTTGFKRDravfedllyqlirrpgaPSSQGTQTPVGLQLGTGVRVAATQT--DF 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  67 TPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAVPEGA-EITIAADGTIS 144
Cdd:COG4786    78 TQGSLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLvTSDGYPVLPENGPITIPEDAtSITISEDGTVS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 145 ALnpgDPANTVAPVGRLKLVKATGSE-VQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIAS 223
Cdd:COG4786   158 VT---LADGDGQQVGQLGLVDFANPAgLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEA 234

                         250       260
                  ....*....|....*....|....*.
gi 1413098009 224 ARRFEMQMKVISSVDDNAGRANQLLS 249
Cdd:COG4786   235 QRAYEANSKVIQTADEMLGKANNLRG 260
flgF PRK12689
flagellar basal-body rod protein FlgF;
18-249 6.22e-35

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 125.25  E-value: 6.22e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  18 QQAVTASNLANASTPGFRAQlnalRAVPVEGLS---------LPTRTLVTASTPGA--DMTPGKMDYTSRPLDVALQQDG 86
Cdd:PRK12689   18 QLDVVANNVANVNTNGFKAR----SSLFQEYLMpgahednfqRPDRRVSYVQDRGTplDLSQGPLEQTKNPLDVAIDGDA 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  87 WLAVQTADGsEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGPIAV-PEGAEITIAADGTISALNPGDPANTVApvGRLKLV 164
Cdd:PRK12689   94 FLAVQTPQG-ERYTRDGALEINAQGQLvTSDGYPVLGTGGPITFqPTDTGIAISPDGTVSVNEGTATTDSIR--GKLRLV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 165 kaTGSEVQRgddgIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRA 244
Cdd:PRK12689  171 --TFANPQA----LKKEGANLYAATAPARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTA 244


                  ....*
gi 1413098009 245 NQLLS 249
Cdd:PRK12689  245 IERLA 249
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-248 3.02e-34

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 123.82  E-value: 3.02e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTA-MGAASQTLNQqAVTASNLANASTPGFRAQlnalRAV----------------------PVeGLSLPTRTLV 57
Cdd:PRK12693    1 MIRALWIAkTGLDAQQTNI-DVISNNLANVNTTGFKKS----RAVfedllyqtirqpgaqssqnttlPS-GLQVGTGVRP 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  58 TASTpgADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEagpIAVPEGAE-I 135
Cdd:PRK12693   75 VATQ--KIFTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLvTSGGYPLQPE---ITIPENATsI 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 136 TIAADGTISALNPGDPANTVapVGRLKL---VKATGSEvQRGDDgifrLSAETQATRGPV-----LQADPTLRvmSGVLE 207
Cdd:PRK12693  150 TIGTDGTVSVTQAGQAAPQV--VGQITLtdfINPAGLE-SIGEN----LYLETAASGAPIegtpgLNGLGTLR--QGFLE 220

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1413098009 208 GSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRANQLL 248
Cdd:PRK12693  221 TSNVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 4-248 1.05e-33

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 122.46  E-value: 1.05e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   4 AIYTA-MGAASQTLNQQaVTASNLANASTPGF---RAQLNALRAVPVEGLSLPTRTLVTASTPGA-------------DM 66
Cdd:TIGR02488   1 ALWTAaTGMNAQQTNMD-VISNNLANVNTTGFkkdRAEFEDLLYQTERQPGAQSSEQQTILPVGVqvglgvrvvatqkLF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  67 TPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEagpIAVPEGA-EITIAADGTIS 144
Cdd:TIGR02488  80 TQGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLvTSNGYPLQPE---ITIPENAtSITVGSDGEVS 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 145 ALNPGDPANTVapVGRLKLVK--------ATGSEvqrgddgifrLSAETQATRGPVL---QADPTLRVMSGVLEGSNVNA 213
Cdd:TIGR02488 157 VRQGGQTEPQE--VGQITLATfinpagleAVGEN----------LFRETPASGPPQIgtpGLDGFGKLRQGFLEASNVNV 224

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1413098009 214 VAAMSDMIASARRFEMQMKVISSVDDNAGRANQLL 248
Cdd:TIGR02488 225 VQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgF PRK12690
flagellar hook-basal body complex protein;
1-239 5.14e-32

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 117.48  E-value: 5.14e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQlNALRAVPVEGLSLPTRTLVTASTPG--ADMTPGKMDYTSRPL 78
Cdd:PRK12690    1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRRE-GLVFSEYVKSLDSGEASLSMARASGrqTDLEQGGLTQTGGQF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  79 DVALQQDGWLAVQTADGsEGYTRNGSIQVDPTGQL-TIQGHQVIGEAG-PIAVPEGAE-ITIAADGTISAlnPGDpantv 155
Cdd:PRK12690   80 DFAIEGEGFFMVETPQG-ERLTRAGSFTPNAEGELvDPDGNRLLDAGGaPIFIPPDARsVAVGADGTLSA--DGQ----- 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 156 aPVGRLKLVKATGS-EVQRGDDGIFRLSAETQATRGPvlqadptlRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVI 234
Cdd:PRK12690  152 -PLGQIGLYQPTDPlGLRREGGTRFRAEGGVEPAEGA--------RLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFL 222


                  ....*
gi 1413098009 235 SSVDD 239
Cdd:PRK12690  223 DREDE 227
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-248 5.48e-25

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 98.97  E-value: 5.48e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVpvegLSLPTRTLVTASTPGADMT---PGKMDYTSRP 77
Cdd:PRK12642    1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTV----VSDTASKKVAFVSQGKSYLsteAGPLTKTGNP 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  78 LDVALQQDGWLAVQTADGSeGYTRNGSIQVDPTGQL-TIQGHQVIGEAG-PIAV-PEGAEITIAADGTISAlnpgdpaNT 154
Cdd:PRK12642   77 LDFAVKGDAWFSFDTPAGQ-VYTRDGRFTMTSTGELvSVTGYPVLDAGGaPIQLnPGGGEPTIGADGAIYQ-------NG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 155 VaPVGRLKLVKATGSE--VQRGDDGIFrlsAETQATrgPVLQaDPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMK 232
Cdd:PRK12642  149 V-QVGAIGLFEIDADAglLRYGNSGVI---PDKPPQ--PVVD-RNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESVSS 221

                         250
                  ....*....|....*.
gi 1413098009 233 VISSVDDNAGRANQLL 248
Cdd:PRK12642  222 LMRQSESSVSEAIKTL 237
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-247 2.16e-23

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 95.26  E-value: 2.16e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAmgaASQTLNQQA---VTASNLANASTPGFRAQlnalRAvpvEGLSLPTRTLVTASTPGADMT---------- 67
Cdd:PRK12816    1 MMRSLWTA---ASGMNAQQFnidTIANNLANVNTTGFKKI----RA---EFEDLIYQTQRRAGTPATEDTvtplgvqvgh 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  68 ------------PGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEagpIAVPEGAE 134
Cdd:PRK12816   71 gvkvaatqrlfeQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLvTSNGYRLLPE---IIFPENYI 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 135 ---ITIAADGTISAL--NPGDPANtvapVGRLKLVK-ATGSEVQRGDDGIFRlsaETQATrGPVLQADPTL----RVMSG 204
Cdd:PRK12816  148 lnsITISEEGIVSVKvgEDNDPIE----LGQIELYRfVNPAGLSAIGKNLFK---ETIAS-GQEIPGIPGSegfgRVLQG 219

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1413098009 205 VLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRANQL 247
Cdd:PRK12816  220 FLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNL 262
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-244 3.33e-23

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 94.38  E-value: 3.33e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAqlNALRAVPVEGLSL----------PTRTLVTASTPGADM---- 66
Cdd:PRK12818    1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKS--DNLAFKSFEDVLIenydkkvgnkNVKNIIGGLSMGSKIdevn 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  67 ---TPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGE------AGPIAVPEGaEIT 136
Cdd:PRK12818   79 tlfTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLvNDSGYYVLGRnnatgaREPINVGNG-KFS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 137 IAADGTIS-ALNPGDPANTVAPVGRLKLVKaTGSEVQRGDdgifrlsaetqatrGPVLQADPTLRvmSGVLEGSNVNAVA 215
Cdd:PRK12818  158 TDADGNISlDGNASYKFNVADFNDYNSLKK-IGDNLYTGN--------------NPQNINGAIVR--QNSLEKSNVNVTN 220

                         250       260
                  ....*....|....*....|....*....
gi 1413098009 216 AMSDMIASARRFEMQMKVISSVDDNAGRA 244
Cdd:PRK12818  221 EMVNMMTTMRSFETNQKIVQSIDETLGKA 249
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 7-247 5.64e-22

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 91.29  E-value: 5.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQ-----------LNALRAVPVEGLSLPTRTLVTASTPGADMTPGKMDYTS 75
Cdd:PRK12817   10 SGMNAQQEKLD---SISNNLANVNTTGYKREdvsfsdlvyetLDRKGYPTNDKPEIITGTGVKATNWIRDNQQGNLLTTG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  76 RPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQLT--------IQGHQVIGEAGPIAVPEGAEITIAADGTISALN 147
Cdd:PRK12817   87 NKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVddngnrleIQLEAGVGINNRNTGFDSNNFTVDEDGGISVKN 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 148 PGdpaNTVAPVGRLKLVKATGSE--VQRGDDgIFRLSAETQATRgpVLQADptlrVMSGVLEGSNVNAVAAMSDMIASAR 225
Cdd:PRK12817  167 VD---GQNKKVGKINIYNAVGNDafISIGDN-LYVPSDGVQVFL--NNDVD----ILQGYLENSNVDLGKEMTDMIITQR 236

                         250       260
                  ....*....|....*....|..
gi 1413098009 226 RFEMQMKVISSVDDNAGRANQL 247
Cdd:PRK12817  237 AFQLSSKGIKTADEMWGIINNM 258
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-239 8.52e-22

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 90.97  E-value: 8.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   1 MDHAIYTAMGAASQTLNQQAVTASNLANASTPGF---RAQLNALRAVPVEGLSLPT--RTLVTASTPGADMTPGKMD--- 72
Cdd:PRK12636    1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFkksRVTFKDMVSQTISGASGPTanRGGVNSKQVGLGSQLGAIDtih 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  73 ------YTSRPLDVALQQDGWLAVQTADGSEgYTRNGSIQVDPTGQL-TIQGHQVIGEAG-PIAVPEGAE-ITIAADGTI 143
Cdd:PRK12636   81 tqgslqTTGRPLDLAISGDGFFRVGDGDNTA-YTRAGNFYLDNEGNIvNADGLYLLGMNGgRIQIPTDAQsFSIGADGTV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 144 SALnpgDPANTVAPVGRLKLVK-ATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIA 222
Cdd:PRK12636  160 SYV---DAGGELQTAGQIGLATfANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIV 236

                         250
                  ....*....|....*..
gi 1413098009 223 SARRFEMQMKVISSVDD 239
Cdd:PRK12636  237 AQRGFQANTRIITTSDE 253
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 127-228 2.22e-20

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 82.68  E-value: 2.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 127 IAVPEGAEITIAADGTISAlnpgdpaNTVaPVGRLKLVKATGSE-VQRGDDGIFRlsaetqATRGPVLQADPTLRVMSGV 205
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQ-------DGE-EVGRLGLVNFDNPNqLQREGDGLFR------ATGGGPAPADSNVRVVQGY 66

                          90       100
                  ....*....|....*....|...
gi 1413098009 206 LEGSNVNAVAAMSDMIASARRFE 228
Cdd:TIGR02490  67 LEGSNVNAVSEMVDMIEAQRAYE 89
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 8-242 2.39e-19

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 84.13  E-value: 2.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   8 AMGAASQTLNQQaVTASNLANASTPGF---RAQLNALRAVPVEGLSLPTRTLVTASTPGADM-------------TPGKM 71
Cdd:PRK12692    8 ATGMSAQQLNLE-VIANNIANLNTTGFkgaRAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLglgvraaairnlhRQGSL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  72 DYTSRPLDVALQQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVigeAGPIAVPEGA-EITIAADGTISALNPG 149
Cdd:PRK12692   87 AQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLvTMEGYAV---DPAILIPQNTtQVTINESGQVFAKIDG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009 150 DpantVAP--VGRLKLVK-ATGSEVQRGDDGIFRlsaETQATRGPV--LQADPTL-RVMSGVLEGSNVNAVAAMSDMIAS 223
Cdd:PRK12692  164 Q----VAPqnLGQLTLANfANESGLEPLGNGLYR---ETPASGAPVvgNPGDVGFgKIQQGYLEGSNVDPVKEITSLITA 236

                         250
                  ....*....|....*....
gi 1413098009 224 ARRFEMQMKVISSVDDNAG 242
Cdd:PRK12692  237 QRAFEMNSKVIQAADEMAG 255
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-247 9.94e-19

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 77.69  E-value: 9.94e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1413098009 169 SEVQRGDDGIFRlsaETQATrgPVLQADPTLRVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVDDNAGRANQL 247
Cdd:pfam06429   1 AGLEKGGDNLFR---ETDGA--PILGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
7-122 7.27e-11

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 61.34  E-value: 7.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   7 TAMGAASQTLNqqaVTASNLANASTPGF---RAQLNALRAVPVEGLSLPTRTL-VTASTPGADMTPGKMDYTSRPLDVAL 82
Cdd:COG1749    10 SGLNAASTALD---VIGNNIANSNTVGFkssRAEFADLVAQSLSGANPTQVGGgVRVASVAQIFTQGSLQSTGNALDLAI 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1413098009  83 QQDGWLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIG 122
Cdd:COG1749    87 SGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLvNSSGLYLQG 127
flgG PRK12819
flagellar basal-body rod protein FlgG;
21-238 1.15e-09

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 57.19  E-value: 1.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  21 VTASNLANASTPGFRAQLNALRAVPVE-------GLSLPTRTLVTASTPGA---DMTPGKMDYTSRPLDVALQ----QDG 86
Cdd:PRK12819   20 VHSNNVANAQTTGFKAENMTSKVFDVQdtyrrgdGAVTNIGSVDYAVVPAAthvNLVQGNIQMTNSDTDFFLDdgpaGTS 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009  87 WLAVQTADGSEGYTRNGSIQVDPTGQL-TIQGHQVIGEAGP-IAVPEGAEITIAADGTISAlnpgdpANTVAPVGRL--K 162
Cdd:PRK12819  100 SFFVTSKNGETFLTRDGSFTLNSDRYLqTASGAFVMGENNErIRIPEGAKVAVQADGTLYD------AVTQNNIARLqtK 173

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1413098009 163 LVKATGSE--VQRGDdGIFRLsAETQATRGPVLQADptlrVMSGVLEGSNVNAVAAMSDMIASARRFEMQMKVISSVD 238
Cdd:PRK12819  174 TVSAEQNDrlVQREN-KSFTL-AEGNIANLPNGQGI----VKNGMLENSNVDMTKEMADLMTDQRMIQASQRVMTSFD 245
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-133 1.22e-08

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 54.84  E-value: 1.22e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   7 TAMGAASQTLNqqaVTASNLANASTPGF---RAQ-----LNALRAVPVE-GLSlptrtlVTASTPGADMTPGKMDYTSRP 77
Cdd:PRK05682    8 SGLNAASNRLD---VIGNNIANANTTGFkssRAEfadlyANSAGTNPTQvGSG------VKVAGVAQQFSQGSITSTGNS 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1413098009  78 LDVALQQDGWLAVqTADGSEGYTRNGSIQVDPTGQLT------IQGHQVIGEAGPIAVPEGA 133
Cdd:PRK05682   79 LDLAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVnaagyyLQGYPADADGGTPPTVGAG 139
flgE PRK06803
flagellar basal body protein FlaE;
7-120 9.81e-07

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 49.00  E-value: 9.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1413098009   7 TAMGAASQTLNqqaVTASNLANASTPGFRAQLNALRAVPVEGLSLPTRTLVTASTPGADmtpGKMDYTSRPLDVALQQDG 86
Cdd:PRK06803    8 SGLNATTQQLN---TISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKD---GSLTYTGRGLDLAISGGG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1413098009  87 WLAVQTADGSEGYTRNGSIQVDPTGQLT------IQGHQV 120
Cdd:PRK06803   82 FFVLKESDGDTAYTRAGMFRSDVDGYLTdpqgmkLQGYPV 121
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 1.11e-05

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 41.40  E-value: 1.11e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1413098009   5 IYTAMGAASQTLNQQAVTASNLANASTPGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-37 1.21e-04

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 41.04  E-value: 1.21e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1413098009   1 MDHAIYTAMGAASQTLN----QQAVTASNLANASTPGFRAQ 37
Cdd:COG1815     1 MSILFDKTFGLLEKALDlrslRQEVIASNIANADTPGYKAR 41
flgB PRK12627
FlgB family protein;
7-37 7.81e-03

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 35.48  E-value: 7.81e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1413098009   7 TAMGAASQTLNQQAVTASNLANASTPGFRAQ 37
Cdd:PRK12627   10 MASAMARHAGERQAVVARNVANADTPGYRAR 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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