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Conserved domains on  [gi|1411832837|emb|SRW40748|]
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receptor [Shigella sonnei]

Protein Classification

transposase family protein( domain architecture ID 10619169)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0006313|GO:0003677|GO:0032196|GO:0015074|GO:0006310|GO:0004803
PubMed:  11774877|20215432|20615441

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-92 3.13e-42

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


:

Pssm-ID: 433493  Cd Length: 88  Bit Score: 132.66  E-value: 3.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411832837  7 MEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKF 86
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLARLDPEAL 80


                 ....*.
gi 1411832837 87 HECFIN 92
Cdd:pfam13808 81 EAAFLA 86
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-92 3.13e-42

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 132.66  E-value: 3.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411832837  7 MEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKF 86
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLARLDPEAL 80


                 ....*.
gi 1411832837 87 HECFIN 92
Cdd:pfam13808 81 EAAFLA 86
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-92 1.10e-33

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 117.64  E-value: 1.10e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1411832837  29 ILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFIN 92
Cdd:NF033564    1 ILFLALCAVLSGAEGWEEIEDFGEAKLDWLRRFLPLPNGIPSHDTFARVFSRIDPEAFQACFLA 64
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-92 3.13e-42

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 132.66  E-value: 3.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1411832837  7 MEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKF 86
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLARLDPEAL 80


                 ....*.
gi 1411832837 87 HECFIN 92
Cdd:pfam13808 81 EAAFLA 86
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-92 1.10e-33

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 117.64  E-value: 1.10e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1411832837  29 ILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFIN 92
Cdd:NF033564    1 ILFLALCAVLSGAEGWEEIEDFGEAKLDWLRRFLPLPNGIPSHDTFARVFSRIDPEAFQACFLA 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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