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Conserved domains on  [gi|1412303444|emb|SRR31729|]
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inner membrane protein [Shigella flexneri]

Protein Classification

YfdY family protein( domain architecture ID 10566741)

YfdY family protein is a DUF2545 domain-containing protein; similar to Escherichia coli protein YfdY

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2545 pfam10810
Protein of unknown function (DUF2545); This family of proteins with unknown function is ...
 1-80 9.39e-29

Protein of unknown function (DUF2545); This family of proteins with unknown function is restricted to Enterobacteriaceae. The sequence is highly conserved.


:

Pssm-ID: 431506  Cd Length: 80  Bit Score: 97.94  E-value: 9.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1412303444  1 MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR 80
Cdd:pfam10810  1 MIYLWVFLALAILTVSGYIGSVRGGISAISSFLGMVILAALIYFFTFWLTDGNELVSGIFTLLSPACGAIIRFMVSYGKR 80
 
Name Accession Description Interval E-value
DUF2545 pfam10810
Protein of unknown function (DUF2545); This family of proteins with unknown function is ...
 1-80 9.39e-29

Protein of unknown function (DUF2545); This family of proteins with unknown function is restricted to Enterobacteriaceae. The sequence is highly conserved.


Pssm-ID: 431506  Cd Length: 80  Bit Score: 97.94  E-value: 9.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1412303444  1 MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR 80
Cdd:pfam10810  1 MIYLWVFLALAILTVSGYIGSVRGGISAISSFLGMVILAALIYFFTFWLTDGNELVSGIFTLLSPACGAIIRFMVSYGKR 80
 
Name Accession Description Interval E-value
DUF2545 pfam10810
Protein of unknown function (DUF2545); This family of proteins with unknown function is ...
 1-80 9.39e-29

Protein of unknown function (DUF2545); This family of proteins with unknown function is restricted to Enterobacteriaceae. The sequence is highly conserved.


Pssm-ID: 431506  Cd Length: 80  Bit Score: 97.94  E-value: 9.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1412303444  1 MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR 80
Cdd:pfam10810  1 MIYLWVFLALAILTVSGYIGSVRGGISAISSFLGMVILAALIYFFTFWLTDGNELVSGIFTLLSPACGAIIRFMVSYGKR 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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