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Conserved domains on  [gi|1414317183|emb|SRI49139|]
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Chemotaxis protein MotB [Shigella sonnei]

Protein Classification

flagellar motor protein MotB( domain architecture ID 11483518)

flagellar motor protein MotB (motility protein B) is required for the rotation of the flagellar motor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-308 0e+00

motility protein MotB;


:

Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 548.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183   1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSE 80
Cdd:PRK09041    1 MKKENHPPIVVKRVKKKGHGHHGGSWKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDST 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  81 SPIPGGGDDYTQSQGEVNKQPNIEDL----KKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQ 156
Cdd:PRK09041   81 SPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDSQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 157 NRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236
Cdd:PRK09041  161 NRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKVL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1414317183 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAES-----QNEPVSALEKPEVAPQVSVPTMPSAEPR 308
Cdd:PRK09041  241 RVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
 
Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-308 0e+00

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 548.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183   1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSE 80
Cdd:PRK09041    1 MKKENHPPIVVKRVKKKGHGHHGGSWKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDST 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  81 SPIPGGGDDYTQSQGEVNKQPNIEDL----KKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQ 156
Cdd:PRK09041   81 SPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDSQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 157 NRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236
Cdd:PRK09041  161 NRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKVL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1414317183 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAES-----QNEPVSALEKPEVAPQVSVPTMPSAEPR 308
Cdd:PRK09041  241 RVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
MotB COG1360
Flagellar motor protein MotB [Cell motility];
17-272 2.24e-57

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 182.35  E-value: 2.24e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  17 KSHGAAHGSWKIAYADFMTAMMAFFLVMWLISisspkeliqiaeyfrtplatavtggdrisnsespipgggddytqsqge 96
Cdd:COG1360     1 EEEGHHGGAWLVTYADLMTLLLAFFVLLWALS------------------------------------------------ 32

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  97 vnkqpniedlkkrmeqSRLRKLrgdldqliesdpklrALRPHLKIDLVQEGLRIQIIDsqnRPMFRTGSADVEPYMRDIL 176
Cdd:COG1360    33 ----------------SALEEN---------------LLSGQVEVRITEEGLVIEIQD---RVLFDSGSAELTPEGRELL 78

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 177 RVIAPVLNGIPNRISLSGHTDDFPYaSGEKGYSNWELSADRANASRRELMVGGLDSGKvLRVVGMAATMRL--SDRGPDD 254
Cdd:COG1360    79 DKIAAVLAEVPNRIRVEGHTDNVPI-STARFPSNWELSAARAAAVVRYLIEGGVPPER-LSAVGYGDTRPLapNDTPEGR 156

                         250
                  ....*....|....*...
gi 1414317183 255 AVNRRISLLVLNKQAEQA 272
Cdd:COG1360   157 ARNRRVEIVILRRAAEEA 174
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 12-66 9.29e-23

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 89.12  E-value: 9.29e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1414317183  12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 66
Cdd:pfam13677   3 KKKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 161-264 1.36e-16

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 74.13  E-value: 1.36e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 161 FRTGSADVEPYMRDILRVIAPVLNGIPN-RISLSGHTDDfpyaSGEKGYsNWELSADRANASRRELMVGGLDSGKvLRVV 239
Cdd:cd07185     6 FDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDS----RGSDAY-NQELSERRAEAVADYLVSKGVDASR-ITAV 79

                          90       100
                  ....*....|....*....|....*..
gi 1414317183 240 GMAATMRLS--DRGPDDAVNRRISLLV 264
Cdd:cd07185    80 GYGESRPIAsnDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-308 0e+00

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 548.39  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183   1 MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISNSE 80
Cdd:PRK09041    1 MKKENHPPIVVKRVKKKGHGHHGGSWKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDST 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  81 SPIPGGGDDYTQSQGEVNKQPNIEDL----KKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQ 156
Cdd:PRK09041   81 SPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDSQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 157 NRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVL 236
Cdd:PRK09041  161 NRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKVL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1414317183 237 RVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAES-----QNEPVSALEKPEVAPQVSVPTMPSAEPR 308
Cdd:PRK09041  241 RVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
motB PRK12799
flagellar motor protein MotB; Reviewed
 1-307 2.55e-169

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 476.13  E-value: 2.55e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183   1 MKNQAHPIIVVKRRKaKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGDRISN 78
Cdd:PRK12799    1 MKHQNHPVILVKKRK-TKHGAAHygGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEYFRTPLKVALTSGDKSSS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  79 SESPIPGGGDDYTQSQGEVNKQPNIEDlkKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNR 158
Cdd:PRK12799   80 STSPIPGGGDDPTQQVGEVRKQINSEE--SRQEIHRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNR 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 159 PMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGKVLRV 238
Cdd:PRK12799  158 PMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILRV 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1414317183 239 VGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALE----------KPEVAPQVSVPTMPSAEP 307
Cdd:PRK12799  238 VGMASTMRLKEQASDDPVNRRISILVLNKQSQHDIEHENLDNRALDIEKATglkqidthgtVPVAAVTPSSAVTQSSAI 316
MotB COG1360
Flagellar motor protein MotB [Cell motility];
17-272 2.24e-57

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 182.35  E-value: 2.24e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  17 KSHGAAHGSWKIAYADFMTAMMAFFLVMWLISisspkeliqiaeyfrtplatavtggdrisnsespipgggddytqsqge 96
Cdd:COG1360     1 EEEGHHGGAWLVTYADLMTLLLAFFVLLWALS------------------------------------------------ 32

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  97 vnkqpniedlkkrmeqSRLRKLrgdldqliesdpklrALRPHLKIDLVQEGLRIQIIDsqnRPMFRTGSADVEPYMRDIL 176
Cdd:COG1360    33 ----------------SALEEN---------------LLSGQVEVRITEEGLVIEIQD---RVLFDSGSAELTPEGRELL 78

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 177 RVIAPVLNGIPNRISLSGHTDDFPYaSGEKGYSNWELSADRANASRRELMVGGLDSGKvLRVVGMAATMRL--SDRGPDD 254
Cdd:COG1360    79 DKIAAVLAEVPNRIRVEGHTDNVPI-STARFPSNWELSAARAAAVVRYLIEGGVPPER-LSAVGYGDTRPLapNDTPEGR 156

                         250
                  ....*....|....*...
gi 1414317183 255 AVNRRISLLVLNKQAEQA 272
Cdd:COG1360   157 ARNRRVEIVILRRAAEEA 174
PRK06778 PRK06778
hypothetical protein; Validated
 10-269 2.61e-49

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 165.49  E-value: 2.61e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  10 VVKRRKAKSHGAAHGS-WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTplATAVTGG-----DRISNSESPI 83
Cdd:PRK06778    5 IIKRANRKKHHVRHSGaWKVAFADFTLAMMALFMVLWIVNSVSKSERESIIAALHG--QSIFNGGglsplNKISPSHPPK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  84 PGGGDDYTQSQGEVnKQPN--IEDLKKRMeqsrlRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMF 161
Cdd:PRK06778   83 PATVAVPEETEKKA-RDVNekTALLKKKS-----ATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMF 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 162 RTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASgeKGYSNWELSADRANASRRELMVGGLDSGKVLRVVGM 241
Cdd:PRK06778  157 ERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKN--NIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAM 234

                         250       260
                  ....*....|....*....|....*...
gi 1414317183 242 AATMRLSDRGPDDAVNRRISLLVLNKQA 269
Cdd:PRK06778  235 ADQMLLDAKNPQSAGNRRIEIMVLTKSA 262
motB PRK05996
MotB family protein;
6-268 1.37e-35

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 132.90  E-value: 1.37e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183   6 HPIIVVKRRKAKSHGAAH-GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF---------------------- 62
Cdd:PRK05996   11 NEIIIVRRGGDDDHEGHHgGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFnpikltdrkpsekglkdpvdga 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  63 ---------------RTPLATAVTG-------GDRISNSE-------------------------------SPIPG---- 85
Cdd:PRK05996   91 egeqkpgkskfeedqRVEGSSAVTGddttrtsGDQTNYSEadlfrnpyavlaeiaqevgqqanvsakgdggAAQSGpatg 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  86 --GGDDY------------------------TQSQGEVNKQPNIEDLKKRMEQ------------SRLRKLRGDLDQLIE 127
Cdd:PRK05996  171 adGGEAYrdpfdpdfwskqvevttagdllppGQAREQAQGAKSATAAPATVPQaaplpqaqpkkaATEEELIADAKKAAT 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 128 SDPK----------------------------------LRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMR 173
Cdd:PRK05996  251 GEPAanaakaakpepmpddqqkeaeqlqaaiaqaiggvAGKLAEGVTVTPVEGGLLISLTDQVDYGMFAIGSAVPRAELV 330

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 174 DILRVIAPVLNGIPNRISLSGHTDDFPYASGEkgYSNWELSADRANASRRELMVGGLDSGKVLRVVGMAatmrlsDRGPD 253
Cdd:PRK05996  331 LAMEKIGQLLAERPGAVIIRGHTDARPFKSAT--YDNWRLSTARAQSAYYMLVRGGLDEKRIEQVEGFA------DRRPK 402

                         410       420
                  ....*....|....*....|.
gi 1414317183 254 D------AVNRRISLLVLNKQ 268
Cdd:PRK05996  403 LpndpnaAANRRIEILIQSKQ 423
motB PRK07734
flagellar motor protein MotB; Reviewed
 13-218 4.01e-26

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 104.05  E-value: 4.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  13 RRKAKSHGAAH--GSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRtplaTAVTGGDRISNSESPI----PGG 86
Cdd:PRK07734    4 RKKKKKKHEEHidESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFN----SEFAGGTGVKDFLSDQkpedEKE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  87 GDDYTQSQGEVNKQPNIEDLKKRmEQSRLRKLRGDLDQLIESdpklRALRPHLKIDLVQEGLRIQIIDSQnrpMFRTGSA 166
Cdd:PRK07734   80 LSASSLEAEQAKKKEEAEAKKKK-EMEELKAVQKKIDQYIKE----KQLSSSLQTKLTEEGLLITILDNI---LFDSGKA 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1414317183 167 DVEPYMRDI------LRVIAPvlngiPNRISLSGHTDDFPYASgEKGYSNWELSADRA 218
Cdd:PRK07734  152 DVRLEDLPLakeisnLLVSNP-----PRNITISGHTDNVPIAN-AQFASNWELSVMRA 203
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 12-305 2.66e-25

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 102.01  E-value: 2.66e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  12 KRRKAKSHGAaHGSWKIAYADFMTAMMAFFLVMWliSISSPKEliqiAEYFRtpLATAVTGGDR-ISNSESPIPGGGDdy 90
Cdd:PRK09038    4 RRKHHEEHEN-HERWLVSYADFITLLFAFFVVMY--AISSVNE----GKYKV--LSEALTGAFNgPSRSMKPIPIGKE-- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  91 tQSQGEVNKQPNIEDLKKRMEQSRlRKLRGDLDQLiesdpkLRALRPHLKIDLV-----QEGLRIQIIDSQnrpMFRTGS 165
Cdd:PRK09038   73 -QPKTTQPARPLVIDSEQPDARAQ-DQLKTIADDL------RKALGPLIESGQVtvrrnELWIEIEINSSL---LFGSGD 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 166 ADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEkgY-SNWELSADRANASRRELMVGGLDSGKvLRVVGMAAT 244
Cdd:PRK09038  142 AMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVPIATAQ--FpSNWELSAARAASVVRLLADDGVAPSR-LAAVGYGEF 218

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1414317183 245 MRLSDRGPDD--AVNRRISLLVLNKQAEQAILHENAESQNEPVSALeKPEVAPQVSVPTMPSA 305
Cdd:PRK09038  219 QPVADNDTAEgrARNRRVVLVILRNLDVRRSLTPVGSANATPDAAL-RRAGTQAAPATAKTDS 280
motB PRK08944
flagellar motor protein MotB; Reviewed
 26-285 1.36e-23

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 97.77  E-value: 1.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  26 WKIAYADFMTAMMAFFLVmwLISIS------------------------SPKElIQ-----IAEYFR------------- 63
Cdd:PRK08944   17 WLATFADLMSLLMCFFVL--LLSFSemdvlkfkqiagsmkfafgvqnkiEVKD-IPkgtsiIAQEFRpgrpeptpievim 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  64 --TPLATAVTGGDRISNSESP---------IPGGGDDYTQSQGEVNKQPNIEDLKKRMEQsrlrKLRGDL-DQLIEsdpk 131
Cdd:PRK08944   94 qqTIDMTQQTLEFQAGESDSAggtqqqrgkQRGGEASAEVKAEKAAAQEQIEDLVKKLAQ----QLEKEIeDGAIE---- 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 132 lralrphlkidLVQEGLRIqIIDSQNRPMFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPyASGEKGYSNW 211
Cdd:PRK08944  166 -----------IESLGQQI-IIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVP-ISSELYRSNW 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 212 ELSADRANASRRELM-VGGLDSGKvLRVVGMAATMrlsDRGPDD-----AVNRRIsllvlnkqaEQAILHENA-ESQNEP 284
Cdd:PRK08944  233 DLSSARAVAVAHELLkVKGFDPQR-LKVVGMADTQ---PLVPNDtaenrARNRRV---------EIIIEQGKAkESDEIP 299


                  .
gi 1414317183 285 V 285
Cdd:PRK08944  300 V 300
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 12-66 9.29e-23

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 89.12  E-value: 9.29e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1414317183  12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 66
Cdd:pfam13677   3 KKKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 161-264 1.36e-16

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 74.13  E-value: 1.36e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 161 FRTGSADVEPYMRDILRVIAPVLNGIPN-RISLSGHTDDfpyaSGEKGYsNWELSADRANASRRELMVGGLDSGKvLRVV 239
Cdd:cd07185     6 FDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDS----RGSDAY-NQELSERRAEAVADYLVSKGVDASR-ITAV 79

                          90       100
                  ....*....|....*....|....*..
gi 1414317183 240 GMAATMRLS--DRGPDDAVNRRISLLV 264
Cdd:cd07185    80 GYGESRPIAsnDTEEGRAKNRRVEIVI 106
motB PRK08457
flagellar motor protein MotB; Reviewed
 26-260 4.30e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 70.52  E-value: 4.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  26 WKIAYADFMTAMMAFFLVMWLISISSPK-------ELIQIAEYfrtplaTAVTGGDRISNSESPIPGGGDDYTqSQGEVN 98
Cdd:PRK08457   16 WAVPYADFLSLLLALFIALYAISAVNKAkvealktEFIKIFDY------TAKPEVKQPVKVIPPDSGDAEEEM-DELKSL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  99 KQPNIEDLKkrmEQSRLRKLRGDLDQLIESdpklralrphlkidlvqeglriQIIDSQNRPMFRTGSADV-EPYMRDILR 177
Cdd:PRK08457   89 KASQNTQQE---TIERRKGEGGALDQIDNG----------------------IALKLPSKLLFENGSAEIiNADMMDYLK 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 178 VIAPVLNGIPNRIS--LSGHTDDFPyASGEKGYSNWELSADRANASRRELMVGGLDSgKVLRVVGMAATMRL--SDRGPD 253
Cdd:PRK08457  144 RIAKIITKLPKQVKinVRGYTDNSP-LNKSRYKDHYELAAARAYNVMKVLIQYGINP-NRLSFSSYGSNNPIapNDSLEN 221


                  ....*..
gi 1414317183 254 DAVNRRI 260
Cdd:PRK08457  222 RLKNNRV 228
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 161-259 3.44e-13

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 64.30  E-value: 3.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 161 FRTGSADVEPYMRDILRVIAPVLNGIPNR--ISLSGHTDDFPYASGekgysNWELSADRANASRRELMVGGLDSGKVLrV 238
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAY-----NWELSQRRAEAVRRYLVNFGVPPSRIS-V 74

                          90       100
                  ....*....|....*....|.
gi 1414317183 239 VGMAATMRLSDRGPDDAVNRR 259
Cdd:pfam00691  75 VGYGATKPITDNKTPEGRARN 95
PRK06925 PRK06925
flagellar motor protein MotB;
12-218 4.87e-13

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 67.10  E-value: 4.87e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  12 KRRKAKSHGAAhgSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTplatavtggdrisnsespipGGGDDYT 91
Cdd:PRK06925    3 RRKRQQSKGSP--KWMVTFSDLITLILVFFILLFSMSQIDAQKFKAAVESFQQ--------------------RGSLGFL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  92 QSQGEVNKQPNIEDLKKRMEQsrlrklrgDLDQLIESdpklraLRPHLKIDLVQEGL------RIQIIDSQNRPMFRTGS 165
Cdd:PRK06925   61 PSAIEFENPAESSEDEEKQED--------QLDELLKK------VNEYIEENELKSVItakrdeRGVVLVLQEAVLFETGE 126

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1414317183 166 ADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPyASGEKGYSNWELSADRA 218
Cdd:PRK06925  127 ADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRP-ISTYRYPSNWELSAARA 178
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 161-267 1.34e-11

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 64.03  E-value: 1.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 161 FRTGSADVEPYMRDILRVIAPVLNGIPN-RISLSGHTDdfpyASGEKGYsNWELSADRANASRRELMVGGLDSGKvLRVV 239
Cdd:COG2885   191 FDFDSAELTPEAKAALDELAALLKENPDlRIEIEGHTD----SRGSDAY-NLALSERRAEAVKDYLVSKGIPASR-ITAV 264

                          90       100       110
                  ....*....|....*....|....*....|
gi 1414317183 240 GMAATMRLSDRGPDD--AVNRRISLLVLNK 267
Cdd:COG2885   265 GYGESRPVASNDTEEgrAKNRRVEIVVLKK 294
motB PRK06667
flagellar motor protein MotB; Validated
 12-265 2.97e-11

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 62.50  E-value: 2.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  12 KRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWliSISSPKE-LIQIaeyfrtpLATAVTGGDrisnsesPIPGGgddY 90
Cdd:PRK06667    4 RKKKCPKCIQGAPEYMLTYGDMVTLLLCFFVMLF--TTNDVDEnVLQI-------ISASFTGTG-------FFKGG---Q 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  91 TQSQGEVNKQPN-IEDLKKRMEQSRLRKLRGDLDQLIEsdPKLRALrphlKIdLVQEGLRIQIIDSQNRPMFRTGSADVE 169
Cdd:PRK06667   65 TLSKGKLSELGNsIMSLPSTEKGKQLSQAKKNASSLFK--PEIQSN----KV-AVTEDERGLVISLASDAFFYPGSAEVK 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 170 -PYMRDILRVIAPVLNGIPN---RISLSGHTDDFPyASGEKGY-SNWELSADRA-NASRRELMVGGLDSGKvLRVVGMAA 243
Cdd:PRK06667  138 lEENRETLQKIASFIGFLDLagrNFRIEGHTDNVD-VNPEGPWkSNWELSGARAvNMLEYILNYGDQSESW-FQVSGFAG 215

                         250       260
                  ....*....|....*....|....
gi 1414317183 244 TMRL-SDRGPD-DAVNRRISLLVL 265
Cdd:PRK06667  216 SRPLaTEDTPEgRAYNRRIDIVIL 239
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 26-264 8.24e-10

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 57.76  E-value: 8.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183  26 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFrtplatavTGGDRISNS--ESPIPgggddytqsqgEVNKQPNI 103
Cdd:PRK06742   12 WMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKF--------SDTEQVDAKvmENTIP-----------DISHEKND 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 104 EDL--KKRMEQsRLRKLRGDLDQLIESdpklralrphlKIDLVQE--GLRIQIIDSQnrpMFRTGSADVEPYMRDILRVI 179
Cdd:PRK06742   73 EKMisKKRMDE-LYKKLKAYVDNNGIS-----------QVNVYREdtGVSVVIVDNL---IFDTGDANVKPEAKEIISQL 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 180 APVLNGIPNRISLSGHTDDFPYASgEKGYSNWELSADR-ANASRRELMVGGLDSgKVLRVVGMAATMRL-SDRGPDD-AV 256
Cdd:PRK06742  138 VGFFQSVPNPIVVEGHTDSRPIHN-DKFPSNWELSSARaANMIHHLIEVYNVDD-KRLAAVGYADTKPVvPNDSPQNwEK 215


                  ....*...
gi 1414317183 257 NRRISLLV 264
Cdd:PRK06742  216 NRRVVIYI 223
PRK07033 PRK07033
DotU family type VI secretion system protein;
160-264 1.98e-07

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 51.97  E-value: 1.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 160 MFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGeKGYSNWELSADRANASrRELMVGGLDSGKVLRVV 239
Cdd:PRK07033  317 LFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRTA-RFPSNWELSQARAQAV-RALLAARLGQPERVTAE 394

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1414317183 240 GMAATMRLSdrgPDD-----AVNRR--ISLLV 264
Cdd:PRK07033  395 GRGDSDPVA---PNDsaenrARNRRveITLLV 423
PRK09039 PRK09039
peptidoglycan -binding protein;
145-262 9.06e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 46.50  E-value: 9.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 145 QEGLRIqIIDS---QNRPMFRTGSADVEPYMRDILRVIAPVLN----GIPNRIS----LSGHTDDFPYASGEKGYSNWEL 213
Cdd:PRK09039  210 REGIRI-VGDRfvfQSEVLFPTGSAELNPEGQAEIAKLAAALIelakEIPPEINwvlrVDGHTDNVPLSGTGRFRDNWEL 288

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1414317183 214 SADRANASRRELMVGGLDSGKvLRVVGMAATMRLSDRGPDDAV--NRRISL 262
Cdd:PRK09039  289 SSARAISVVKFLIALGVPADR-LAAAGFGEFQPLDPGDTPEARarNRRIEL 338
PRK08126 PRK08126
hypothetical protein; Provisional
 160-264 1.10e-05

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 46.61  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 160 MFRTGSADVEPYMRDILRVIAPVLNGIPNRISLSGHTDDFPYASGEKGySNWELSADRANASRRELMVGGLDSGKvLRVV 239
Cdd:PRK08126  326 MFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQPIRSAQFA-SNLVLSEKRAAQVAQMLQSAGVPASR-LEAV 403

                          90       100
                  ....*....|....*....|....*..
gi 1414317183 240 GMAATMRLSDRGPDD--AVNRRISLLV 264
Cdd:PRK08126  404 GKGDAQPVADNRTPQgrAQNRRVEITV 430
PRK09040 PRK09040
hypothetical protein; Provisional
 160-235 8.95e-04

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 40.00  E-value: 8.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1414317183 160 MFRTGSADVEPYMRDILRVIAPVLNGIPNR----ISLSGHTDDFPYASGEKGYS-NWELSADRANASRRELMVGGLDSGK 234
Cdd:PRK09040   91 LFALNSDQLQPEGRELLKSLAGPLAAYLRArdeiLMVSGFTDDQPVRAGNRRFAdNWELSAQRALTVTRALIDAGVPASS 170


                  .
gi 1414317183 235 V 235
Cdd:PRK09040  171 V 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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