NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1403485423|emb|SQH12613|]
View 

Nitrous oxide-stimulated promoter [Providencia heimbachae]

Protein Classification

nitrous oxide-stimulated promoter family protein( domain architecture ID 10570245)

nitrous oxide-stimulated promoter family protein similar to Escherichia coli YgbA, which is regulated by the gene-product of the bacterial nsrR gene in response to nitric oxide and nitrosative stress

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 2.56e-49

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


:

Pssm-ID: 432053  Cd Length: 106  Bit Score: 152.36  E-value: 2.56e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403485423   4 KRIHREIITIEKMIKIYEKAYPAPIDNP-DHYQKLYSYAINRLEKCRYGEQKPACKQCPIHCYQPKMREQMKVIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1403485423  83 KMLIHHPILAIRHLLDDRKPVPELPP 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 2.56e-49

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 152.36  E-value: 2.56e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403485423   4 KRIHREIITIEKMIKIYEKAYPAPIDNP-DHYQKLYSYAINRLEKCRYGEQKPACKQCPIHCYQPKMREQMKVIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1403485423  83 KMLIHHPILAIRHLLDDRKPVPELPP 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
1-98 7.86e-39

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 125.83  E-value: 7.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403485423   1 MTGKRIHREIITIEKMIKIYEKAY--PAPIDNPDHYQKLYSYAINRLEKCRYGEQKPACKQCPIHCYQPKMREQMKVIMR 78
Cdd:PRK10410    1 MLGKKILREKKTIKKMIRLYCKAKhgGEPQKLCPECEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMR 80

                          90       100
                  ....*....|....*....|
gi 1403485423  79 WAGPKMLIHHPILAIRHLLD 98
Cdd:PRK10410   81 FSGPRMLLRHPILAIRHLFD 100
 
Name Accession Description Interval E-value
YgbA_NO pfam11756
Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that ...
 4-108 2.56e-49

Nitrous oxide-stimulated promoter; The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.


Pssm-ID: 432053  Cd Length: 106  Bit Score: 152.36  E-value: 2.56e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403485423   4 KRIHREIITIEKMIKIYEKAYPAPIDNP-DHYQKLYSYAINRLEKCRYGEQKPACKQCPIHCYQPKMREQMKVIMRWAGP 82
Cdd:pfam11756   1 KKREREKKTVSAMIALYCKKHHGTKGELcAECQELLEYALQRLDRCPFGETKPFCSNCPVHCYKPEMREKIREVMRYAGP 80

                          90       100
                  ....*....|....*....|....*.
gi 1403485423  83 KMLIHHPILAIRHLLDDRKPVPELPP 108
Cdd:pfam11756  81 RMLLYHPILAIRHLIDSRREKPKLPP 106
PRK10410 PRK10410
nitrous oxide-stimulated promoter family protein;
1-98 7.86e-39

nitrous oxide-stimulated promoter family protein;


Pssm-ID: 236683  Cd Length: 100  Bit Score: 125.83  E-value: 7.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1403485423   1 MTGKRIHREIITIEKMIKIYEKAY--PAPIDNPDHYQKLYSYAINRLEKCRYGEQKPACKQCPIHCYQPKMREQMKVIMR 78
Cdd:PRK10410    1 MLGKKILREKKTIKKMIRLYCKAKhgGEPQKLCPECEELLEYAQKRLDRCPFGEEKPTCKKCPVHCYKPAKREKMKQVMR 80

                          90       100
                  ....*....|....*....|
gi 1403485423  79 WAGPKMLIHHPILAIRHLLD 98
Cdd:PRK10410   81 FSGPRMLLRHPILAIRHLFD 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH