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Conserved domains on  [gi|1274095594|emb|SOB42120|]
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conserved hypothetical protein [Latilactobacillus sakei]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 11447737)

PadR family transcriptional regulator similar to the phenolic acid decarboxylation repressor, which is a transcription factor that represses genes associated with the phenolic acid stress response in gram-positive bacteria

Gene Ontology:  GO:0003677|GO:0003700
PubMed:  10679470|10908318|10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-83 1.88e-14

DNA-binding transcriptional regulator, PadR family [Transcription];


:

Pssm-ID: 441301  Cd Length: 102  Bit Score: 65.34  E-value: 1.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1274095594   1 MIQFLILGLLKKKPgAYGYELLADMENnYFEFFLNFTKGSFYYNLQQLAEKQLIEKIVDDASDKREKNRYVLTAGGEAAF 80
Cdd:COG1695     9 TLELLILALLAEGP-MYGYEIIKELEE-RSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREEL 86


                  ...
gi 1274095594  81 EKQ 83
Cdd:COG1695    87 AEW 89
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-83 1.88e-14

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 65.34  E-value: 1.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1274095594   1 MIQFLILGLLKKKPgAYGYELLADMENnYFEFFLNFTKGSFYYNLQQLAEKQLIEKIVDDASDKREKNRYVLTAGGEAAF 80
Cdd:COG1695     9 TLELLILALLAEGP-MYGYEIIKELEE-RSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREEL 86


                  ...
gi 1274095594  81 EKQ 83
Cdd:COG1695    87 AEW 89
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 6-81 1.77e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 51.48  E-value: 1.77e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1274095594   6 ILGLLKKKPGaYGYELLADMENNYFEFFlNFTKGSFYYNLQQLAEKQLIEKIVDDASDKREKNRYVLTAGGEAAFE 81
Cdd:pfam03551   1 VLAVLGEQPR-YGYEIIKELEELSGGFW-RPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRRELA 74
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
1-83 1.88e-14

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 65.34  E-value: 1.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1274095594   1 MIQFLILGLLKKKPgAYGYELLADMENnYFEFFLNFTKGSFYYNLQQLAEKQLIEKIVDDASDKREKNRYVLTAGGEAAF 80
Cdd:COG1695     9 TLELLILALLAEGP-MYGYEIIKELEE-RSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREEL 86


                  ...
gi 1274095594  81 EKQ 83
Cdd:COG1695    87 AEW 89
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 6-81 1.77e-09

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 51.48  E-value: 1.77e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1274095594   6 ILGLLKKKPGaYGYELLADMENNYFEFFlNFTKGSFYYNLQQLAEKQLIEKIVDDASDKREKNRYVLTAGGEAAFE 81
Cdd:pfam03551   1 VLAVLGEQPR-YGYEIIKELEELSGGFW-RPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRRELA 74
HTH_27 pfam13463
Winged helix DNA-binding domain;
32-76 1.08e-03

Winged helix DNA-binding domain;


Pssm-ID: 433228 [Multi-domain]  Cd Length: 68  Bit Score: 36.11  E-value: 1.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1274095594  32 FFLNFTKGSFYYNLQQLAEKQLIEKiVDDASDKREKnRYVLTAGG 76
Cdd:pfam13463  26 FRLNVEDSHVSYSLKKLTEAGLVER-EGSEEDGRET-RVRLTAKG 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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