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Conserved domains on  [gi|1170259598|emb|SLO40862|]
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NinF family protein [Klebsiella pneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NinF super family cl05404
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.25e-08

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


The actual alignment was detected with superfamily member pfam05810:

Pssm-ID: 399072  Cd Length: 57  Bit Score: 45.56  E-value: 1.25e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1170259598  1 MISPNQIQSYERQSVRRAL-CAGCTKELAPEETYACSECVDEwlIYRDPNNSMTEEED 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALtCANCGQKLHVLEVHVCEACCAE--LMSDPNSSMYEEED 56
 
Name Accession Description Interval E-value
NinF pfam05810
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.25e-08

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


Pssm-ID: 399072  Cd Length: 57  Bit Score: 45.56  E-value: 1.25e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1170259598  1 MISPNQIQSYERQSVRRAL-CAGCTKELAPEETYACSECVDEwlIYRDPNNSMTEEED 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALtCANCGQKLHVLEVHVCEACCAE--LMSDPNSSMYEEED 56
 
Name Accession Description Interval E-value
NinF pfam05810
NinF protein; This family consists of several bacteriophage NinF proteins as well as related ...
 1-57 1.25e-08

NinF protein; This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.


Pssm-ID: 399072  Cd Length: 57  Bit Score: 45.56  E-value: 1.25e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1170259598  1 MISPNQIQSYERQSVRRAL-CAGCTKELAPEETYACSECVDEwlIYRDPNNSMTEEED 57
Cdd:pfam05810  1 MLSPSQSLQYQKESVERALtCANCGQKLHVLEVHVCEACCAE--LMSDPNSSMYEEED 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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