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Conserved domains on  [gi|1115874994|emb|SCU67019|]
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60S ribosomal protein L27, putative [Trypanosoma equiperdum]

Protein Classification

PTZ00471 family protein( domain architecture ID 10794402)

PTZ00471 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00471 PTZ00471
60S ribosomal protein L27; Provisional
 1-133 2.74e-76

60S ribosomal protein L27; Provisional


:

Pssm-ID: 240428 [Multi-domain]  Cd Length: 134  Bit Score: 222.42  E-value: 2.74e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994   1 MKFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFL 80
Cdd:PTZ00471    2 TKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1115874994  81 PTRYNMDLSRELRGRINVSDASKKAKSKQLVKRLFQARYNAGNNRWFFQRLRF 133
Cdd:PTZ00471   82 PTRYNMDMSKELRGRINVSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134
 
Name Accession Description Interval E-value
PTZ00471 PTZ00471
60S ribosomal protein L27; Provisional
 1-133 2.74e-76

60S ribosomal protein L27; Provisional


Pssm-ID: 240428 [Multi-domain]  Cd Length: 134  Bit Score: 222.42  E-value: 2.74e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994   1 MKFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFL 80
Cdd:PTZ00471    2 TKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1115874994  81 PTRYNMDLSRELRGRINVSDASKKAKSKQLVKRLFQARYNAGNNRWFFQRLRF 133
Cdd:PTZ00471   82 PTRYNMDMSKELRGRINVSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134
KOW_RPL27 cd06090
KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW ...
 5-87 1.23e-38

KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4.


Pssm-ID: 240514  Cd Length: 83  Bit Score: 125.37  E-value: 1.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994   5 KPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFLPTRY 84
Cdd:cd06090     1 KPGKVVIVLSGRYAGKKAVIVKNNDEGTKDRPYGHALVAGIDRYPRKVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRY 80


                  ...
gi 1115874994  85 NMD 87
Cdd:cd06090    81 SVD 83
Ribosomal_L27e pfam01777
Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the ...
 51-133 5.95e-24

Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family.


Pssm-ID: 460322  Cd Length: 85  Bit Score: 88.02  E-value: 5.95e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994  51 KVVRGMSKRSITRRSQVGVFLRVVNHKHFLPTRYNMDL--SRELRGRINVSDASKKAKSKQLVKRLFQARYNAGNNRWFF 128
Cdd:pfam01777   1 KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVedLKGVVTKDTFKDPSKRKEARKEVKKKFEERYKTGKNKWFF 80


                  ....*
gi 1115874994 129 QRLRF 133
Cdd:pfam01777  81 TKLRF 85
 
Name Accession Description Interval E-value
PTZ00471 PTZ00471
60S ribosomal protein L27; Provisional
 1-133 2.74e-76

60S ribosomal protein L27; Provisional


Pssm-ID: 240428 [Multi-domain]  Cd Length: 134  Bit Score: 222.42  E-value: 2.74e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994   1 MKFLKPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFL 80
Cdd:PTZ00471    2 TKFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPKKVVRGMSKRTIARRSQVGVFLRVVNHKHFL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1115874994  81 PTRYNMDLSRELRGRINVSDASKKAKSKQLVKRLFQARYNAGNNRWFFQRLRF 133
Cdd:PTZ00471   82 PTRYNMDMSKELRGRINVSDASKKARSKQLVKKLFQARYNAGSSRWFFQRLRF 134
KOW_RPL27 cd06090
KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW ...
 5-87 1.23e-38

KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4.


Pssm-ID: 240514  Cd Length: 83  Bit Score: 125.37  E-value: 1.23e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994   5 KPGKVVIMTSGRYAGKKAVIVQNTDTRNKERPYGHSLLAGIKKYPRKVVRGMSKRSITRRSQVGVFLRVVNHKHFLPTRY 84
Cdd:cd06090     1 KPGKVVIVLSGRYAGKKAVIVKNNDEGTKDRPYGHALVAGIDRYPRKVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRY 80


                  ...
gi 1115874994  85 NMD 87
Cdd:cd06090    81 SVD 83
Ribosomal_L27e pfam01777
Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the ...
 51-133 5.95e-24

Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family.


Pssm-ID: 460322  Cd Length: 85  Bit Score: 88.02  E-value: 5.95e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1115874994  51 KVVRGMSKRSITRRSQVGVFLRVVNHKHFLPTRYNMDL--SRELRGRINVSDASKKAKSKQLVKRLFQARYNAGNNRWFF 128
Cdd:pfam01777   1 KVTKKMSKKKIAKRSKVKPFVKVVNYNHLMPTRYTVDVedLKGVVTKDTFKDPSKRKEARKEVKKKFEERYKTGKNKWFF 80


                  ....*
gi 1115874994 129 QRLRF 133
Cdd:pfam01777  81 TKLRF 85
KOW pfam00467
KOW motif; This family has been extended to coincide with ref. The KOW (Kyprides, Ouzounis, ...
 6-33 4.42e-03

KOW motif; This family has been extended to coincide with ref. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and NusG.


Pssm-ID: 425698 [Multi-domain]  Cd Length: 32  Bit Score: 32.74  E-value: 4.42e-03
                          10        20
                  ....*....|....*....|....*...
gi 1115874994   6 PGKVVIMTSGRYAGKKAVIVQNTDTRNK 33
Cdd:pfam00467   1 KGDVVRVIAGPFKGKVGKVVEVDDKKNR 28
eL14 cd23702
Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the ...
 2-25 6.32e-03

Vairimorpha necatrix ribosomal protein eL14 and similar proteins; eL14 is a component of the large subunit (LSU) of the microsporidian ribosome that reveals a prokaryotic-like rRNA core covered with eukaryotic ribosomal proteins.


Pssm-ID: 467915 [Multi-domain]  Cd Length: 82  Bit Score: 33.57  E-value: 6.32e-03
                          10        20
                  ....*....|....*....|....
gi 1115874994   2 KFLKPGKVVIMTSGRYAGKKAVIV 25
Cdd:cd23702     1 RFVEVGRVVLINYGPDAGKLAVIV 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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