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Conserved domains on  [gi|1573988927|gb|RZE72482|]
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hypothetical protein C0R02_28035 [Streptomyces albidoflavus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5999 pfam19462
Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene ...
 2-58 2.25e-36

Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. This family includes a protein from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in Actinobacteria.


:

Pssm-ID: 466098  Cd Length: 57  Bit Score: 115.73  E-value: 2.25e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1573988927  2 CQHQPLCPTADSADREAARVVAHRPEQGWSLLCNGVVLFEDTGELLPDGQIVAPHRP 58
Cdd:pfam19462  1 CSHQPPCPSADAPDREAARVVAAHPEQGWSLLCNGVILFDDTGELLPDGRVVAPHRP 57
 
Name Accession Description Interval E-value
DUF5999 pfam19462
Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene ...
 2-58 2.25e-36

Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. This family includes a protein from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in Actinobacteria.


Pssm-ID: 466098  Cd Length: 57  Bit Score: 115.73  E-value: 2.25e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1573988927  2 CQHQPLCPTADSADREAARVVAHRPEQGWSLLCNGVVLFEDTGELLPDGQIVAPHRP 58
Cdd:pfam19462  1 CSHQPPCPSADAPDREAARVVAAHPEQGWSLLCNGVILFDDTGELLPDGRVVAPHRP 57
 
Name Accession Description Interval E-value
DUF5999 pfam19462
Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene ...
 2-58 2.25e-36

Family of unknown function (DUF5999); This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000703) is described by MIBiG as an example of the following biosynthetic class, saccharide. This family includes a protein from the kanamycin biosynthetic gene cluster from Streptomyces kanamyceticus. This family appears to be predominantly found in Actinobacteria.


Pssm-ID: 466098  Cd Length: 57  Bit Score: 115.73  E-value: 2.25e-36
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1573988927  2 CQHQPLCPTADSADREAARVVAHRPEQGWSLLCNGVVLFEDTGELLPDGQIVAPHRP 58
Cdd:pfam19462  1 CSHQPPCPSADAPDREAARVVAAHPEQGWSLLCNGVILFDDTGELLPDGRVVAPHRP 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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