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Conserved domains on  [gi|1570267108|gb|RYR43363|]
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hypothetical protein Ahy_A08g039789 [Arachis hypogaea]

Protein Classification

UBA-like domain-containing protein( domain architecture ID 12073806)

UBA-like domain-containing protein, formerly called DUF1421 domain-containing protein

PubMed:  26228684

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 572-616 1.14e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


:

Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 1.14e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1570267108 572 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 616
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 super family cl31127
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 448-560 5.91e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


The actual alignment was detected with superfamily member TIGR01628:

Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.87  E-value: 5.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570267108 448 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 526
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1570267108 527 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 560
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 572-616 1.14e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 1.14e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1570267108 572 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 616
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 448-560 5.91e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.87  E-value: 5.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570267108 448 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 526
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1570267108 527 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 560
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 442-560 6.83e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.68  E-value: 6.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570267108  442 PSETL--PNSMPMQMPYSRIPPAASGHSdampygysgsgrtgPQQPLPPQIKSSFPGQPGDP---YGTSATHAAPPPTSA 516
Cdd:PRK10263   740 PHEPLftPIVEPVQQPQQPVAPQQQYQQ--------------PQQPVAPQPQYQQPQQPVAPqpqYQQPQQPVAPQPQYQ 805

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1570267108  517 YMIYDSEGGRTHPPPQPPHFAQAGY----PPSSASLQNPAPHNLMVRN 560
Cdd:PRK10263   806 QPQQPVAPQPQYQQPQQPVAPQPQYqqpqQPVAPQPQDTLLHPLLMRN 853
 
Name Accession Description Interval E-value
DUF1421 pfam07223
UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. ...
 572-616 1.14e-21

UBA-like domain (DUF1421); This domain represents a conserved region that has a UBA like fold. It is found in a number of plant proteins of unknown function.


Pssm-ID: 399892  Cd Length: 45  Bit Score: 88.23  E-value: 1.14e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1570267108 572 YSDLIEKLVNMGFRGDHVAGVIQRMEESGQPVDFNSVLDRLNVHS 616
Cdd:pfam07223   1 YGDMIDKVVSMGFPGDHVRSMILRMVEAGQPVDFNVVLDRLSSGS 45
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 448-560 5.91e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.87  E-value: 5.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570267108 448 NSMPM-QMPYSRIPPAASGhsdAMPYGYSGSGRTGPQQPLPPQIKSSFPGqPGDPYGTSATHAAPPPTSAYMIYDSEGGR 526
Cdd:TIGR01628 378 LQPRMrQLPMGSPMGGAMG---QPPYYGQGPQQQFNGQPLGWPRMSMMPT-PMGPGGPLRPNGLAPMNAVRAPSRNAQNA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1570267108 527 THPPPQPPHFAQAGYPPSSASLQNPAPHNLMVRN 560
Cdd:TIGR01628 454 AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQG 487
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 442-560 6.83e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.68  E-value: 6.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1570267108  442 PSETL--PNSMPMQMPYSRIPPAASGHSdampygysgsgrtgPQQPLPPQIKSSFPGQPGDP---YGTSATHAAPPPTSA 516
Cdd:PRK10263   740 PHEPLftPIVEPVQQPQQPVAPQQQYQQ--------------PQQPVAPQPQYQQPQQPVAPqpqYQQPQQPVAPQPQYQ 805

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1570267108  517 YMIYDSEGGRTHPPPQPPHFAQAGY----PPSSASLQNPAPHNLMVRN 560
Cdd:PRK10263   806 QPQQPVAPQPQYQQPQQPVAPQPQYqqpqQPVAPQPQDTLLHPLLMRN 853
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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