|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
1-528 |
0e+00 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 1009.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLS 80
Cdd:PRK15424 4 MAHPPRDNDDKPVIWTVSVSRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAAGSNGAYLKSRLS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG 160
Cdd:PRK15424 84 VPVILIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIEAVVGAG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240
Cdd:PRK15424 164 LITDLAEEAGMTGIFIYSAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320
Cdd:PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRE 400
Cdd:PRK15424 324 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 401 RVTDILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP 480
Cdd:PRK15424 404 RVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLLLP 483
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1550638938 481 ELARESAKI--PSPSLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528
Cdd:PRK15424 484 ELARESAKTpaPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
8-528 |
0e+00 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 874.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 8 NDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLSVPVILIK 87
Cdd:TIGR02329 1 NADKPVIWTVSVSRLFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 88 PSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167
Cdd:TIGR02329 81 PTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGLITDLAE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 168 EAGMTGIFIYSAATVRQAFSDALDMTRMS-LRHN--THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244
Cdd:TIGR02329 161 QAGLHGVFLYSADSVRQAFDDALDVARATrLRQAatLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 245 EGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324
Cdd:TIGR02329 241 LGESGTGKELVAQAIH--------QLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLF 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTD 404
Cdd:TIGR02329 313 LDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGD 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLPELAR 484
Cdd:TIGR02329 393 ILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALAPELAE 472
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1550638938 485 ESAK--IPSPSL--------LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528
Cdd:TIGR02329 473 ASGKgkTSALSLrersrveaLAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
172-527 |
2.41e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 448.07 E-value: 2.41e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 172 TGIFIYSAATVRQAFSDALDMTRMS--LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249
Cdd:COG3829 92 TAIPIFEDGEVIGAVETFRDITELKrlERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESG 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 250 TGKELAAQAIHREYfarhdARqgkKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329
Cdd:COG3829 172 TGKELFARAIHNAS-----PR---RDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIG 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLA 409
Cdd:COG3829 244 EMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLA 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 410 ESFLKVSLAALSAP---FSAALRQglqasetVLVHYDWPGNIRELRNMMERLALFLSvepTPDLTPQFLQLLLPELARES 486
Cdd:COG3829 324 EHFLEKFNKKYGKNikgISPEALE-------LLLAYDWPGNVRELENVIERAVVLSE---GDVITPEHLPEYLLEEAEAA 393
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1550638938 487 AKIPSPSLLTP---------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:COG3829 394 SAAEEGSLKEAleevekeliEEALEKTGGNKSKAAKALGISRSTLYRKLK 443
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
218-394 |
4.70e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 291.23 E-value: 4.70e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFG 297
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQL--------SPRADGPFVAVNCAAIPEELLESELFG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 298 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQ 377
Cdd:pfam00158 73 HEKGAFTGADSD-RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAE 151
|
170
....*....|....*..
gi 1550638938 378 GQFRRDLFYRLSILRLQ 394
Cdd:pfam00158 152 GRFREDLYYRLNVIPIE 168
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
215-527 |
2.97e-96 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 303.35 E-value: 2.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARQGkkshPFVAVNCGAIAESLLEAE 294
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQ-----ASGRKG----PFVPVNCSAIPEELFESE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 295 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:NF041552 337 FFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKM 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 375 MRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKvslaALSAPFSAALrqgLQASETV---LVHYDWPGNIREL 451
Cdd:NF041552 417 VKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLK----EICKENNKEI---PKIDKEVydiLQNYKWKGNIREL 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 452 RNMMERLALFLSV-EPTPDLTPQFlqlLLPELARESAKIPSPSL-----------LTPQQALEKFNGDKTAAANYLGISR 519
Cdd:NF041552 490 KNTIEHLVVLSKNgTITKDSIPEY---ILESVKKKEDEEGDYPLdlnkavekleiDTIKKALEMSNGNKAKAAKLLNIPR 566
|
....*...
gi 1550638938 520 TTFWRRLK 527
Cdd:NF041552 567 STLYYKLK 574
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
220-397 |
4.21e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 95.29 E-value: 4.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 220 GQSPQMEQVRQtiLLYARSSAAVLIEGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAELFGYE 299
Cdd:cd00009 2 GQEEAIEALRE--ALELPPPKNLLLYGPPGTGKTTLARAIANELF--------RPGAPFLYLNASDLLEGLVVAELFGHF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 300 EgaftgsrRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRvgghqPVPVDVRVISATHcnleeDMRQGQ 379
Cdd:cd00009 72 L-------VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATN-----RPLLGD 134
|
170
....*....|....*...
gi 1550638938 380 FRRDLFYRLSIlRLQLPP 397
Cdd:cd00009 135 LDRALYDRLDI-RIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
242-374 |
4.57e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 242 VLIEGETGTGKELAAQAIHREYfarhdarqGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA-GLFEIAHG 320
Cdd:smart00382 5 ILIVGPPGSGKTTLARALAREL--------GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLrLALALARK 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1550638938 321 ---GTLFLDEIGEMPLPLQTRLLRVLEEkevTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:smart00382 77 lkpDVLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEKDLG 130
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
1-528 |
0e+00 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 1009.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLS 80
Cdd:PRK15424 4 MAHPPRDNDDKPVIWTVSVSRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAAGSNGAYLKSRLS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG 160
Cdd:PRK15424 84 VPVILIKPSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIEAVVGAG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240
Cdd:PRK15424 164 LITDLAEEAGMTGIFIYSAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLGQSPQMEQVRQTILLYARSSA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320
Cdd:PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRE 400
Cdd:PRK15424 324 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 401 RVTDILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLP 480
Cdd:PRK15424 404 RVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQLLLP 483
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1550638938 481 ELARESAKI--PSPSLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528
Cdd:PRK15424 484 ELARESAKTpaPRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
8-528 |
0e+00 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 874.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 8 NDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLSVPVILIK 87
Cdd:TIGR02329 1 NADKPVIWTVSVSRLFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 88 PSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167
Cdd:TIGR02329 81 PTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAGLITDLAE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 168 EAGMTGIFIYSAATVRQAFSDALDMTRMS-LRHN--THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244
Cdd:TIGR02329 161 QAGLHGVFLYSADSVRQAFDDALDVARATrLRQAatLRSATRNQLRTRYRLDDLLGASAPMEQVRALVRLYARSDATVLI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 245 EGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324
Cdd:TIGR02329 241 LGESGTGKELVAQAIH--------QLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLF 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTD 404
Cdd:TIGR02329 313 LDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGD 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFLQLLLPELAR 484
Cdd:TIGR02329 393 ILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALAPELAE 472
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1550638938 485 ESAK--IPSPSL--------LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528
Cdd:TIGR02329 473 ASGKgkTSALSLrersrveaLAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
172-527 |
2.41e-154 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 448.07 E-value: 2.41e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 172 TGIFIYSAATVRQAFSDALDMTRMS--LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249
Cdd:COG3829 92 TAIPIFEDGEVIGAVETFRDITELKrlERKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILGESG 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 250 TGKELAAQAIHREYfarhdARqgkKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329
Cdd:COG3829 172 TGKELFARAIHNAS-----PR---RDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIG 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLA 409
Cdd:COG3829 244 EMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLA 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 410 ESFLKVSLAALSAP---FSAALRQglqasetVLVHYDWPGNIRELRNMMERLALFLSvepTPDLTPQFLQLLLPELARES 486
Cdd:COG3829 324 EHFLEKFNKKYGKNikgISPEALE-------LLLAYDWPGNVRELENVIERAVVLSE---GDVITPEHLPEYLLEEAEAA 393
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1550638938 487 AKIPSPSLLTP---------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:COG3829 394 SAAEEGSLKEAleevekeliEEALEKTGGNKSKAAKALGISRSTLYRKLK 443
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
216-527 |
4.66e-122 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 364.67 E-value: 4.66e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARqgkKSHPFVAVNCGAIAESLLEAEL 295
Cdd:COG2204 131 SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHR-----LSPR---ADGPFVAVNCAAIPEELLESEL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 296 FGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375
Cdd:COG2204 203 FGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELV 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 376 RQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKVSLAAL--SAPFSAALRQGLQAsetvlvhYDWPGNIRELRN 453
Cdd:COG2204 282 EEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELgkPVKLSPEALEALLA-------YDWPGNVRELEN 354
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1550638938 454 MMERLALFlsvEPTPDLTPQFLQLLLPELAREsakipspsllTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:COG2204 355 VIERAVIL---ADGEVITAEDLPEALEEVERE----------LIERALEETGGNVSRAAELLGISRRTLYRKLK 415
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
210-528 |
9.60e-119 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 363.07 E-value: 9.60e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYfARHDArqgkkshPFVAVNCGAIAES 289
Cdd:COG3284 315 PAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAAS-PRADG-------PFVAVNCAAIPEE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 290 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369
Cdd:COG3284 387 LIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHR 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 370 NLEEDMRQGQFRRDLFYRLSILRLQLPPLRERvTDILPLAESFL-KVSLAALSAPFSAALRQGLQAsetvlvhYDWPGNI 448
Cdd:COG3284 467 DLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLrELAAGRGPLRLSPEALALLAA-------YPWPGNV 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 449 RELRNMMERLALFLSVEP--TPDLTPQFLQLLLPelARESAKIPSPSLLTPQ-----QALEKFNGDKTAAANYLGISRTT 521
Cdd:COG3284 539 RELRNVLRTALALADGGVitVEDLPDELRAELAA--AAPAAAAPLTSLEEAErdailRALRACGGNVSAAARALGISRST 616
|
....*..
gi 1550638938 522 FWRRLKS 528
Cdd:COG3284 617 LYRKLKR 623
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
218-394 |
4.70e-97 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 291.23 E-value: 4.70e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAELFG 297
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQL--------SPRADGPFVAVNCAAIPEELLESELFG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 298 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQ 377
Cdd:pfam00158 73 HEKGAFTGADSD-RKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAE 151
|
170
....*....|....*..
gi 1550638938 378 GQFRRDLFYRLSILRLQ 394
Cdd:pfam00158 152 GRFREDLYYRLNVIPIE 168
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
215-527 |
2.97e-96 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 303.35 E-value: 2.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARQGkkshPFVAVNCGAIAESLLEAE 294
Cdd:NF041552 266 FGKIIGKSKKIIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQ-----ASGRKG----PFVPVNCSAIPEELFESE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 295 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:NF041552 337 FFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKM 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 375 MRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKvslaALSAPFSAALrqgLQASETV---LVHYDWPGNIREL 451
Cdd:NF041552 417 VKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLK----EICKENNKEI---PKIDKEVydiLQNYKWKGNIREL 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 452 RNMMERLALFLSV-EPTPDLTPQFlqlLLPELARESAKIPSPSL-----------LTPQQALEKFNGDKTAAANYLGISR 519
Cdd:NF041552 490 KNTIEHLVVLSKNgTITKDSIPEY---ILESVKKKEDEEGDYPLdlnkavekleiDTIKKALEMSNGNKAKAAKLLNIPR 566
|
....*...
gi 1550638938 520 TTFWRRLK 527
Cdd:NF041552 567 STLYYKLK 574
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
204-527 |
3.66e-90 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 284.05 E-value: 3.66e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHreYFARhdarqgKKSHPFVAVNC 283
Cdd:PRK11361 131 HLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIH--YNSR------RAKGPFIKVNC 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 284 GAIAESLLEAELFGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363
Cdd:PRK11361 203 AALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 364 ISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKvslaALSAPFSAALRQGLQASETVLVHYD 443
Cdd:PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQ----KFSSENQRDIIDIDPMAMSLLTAWS 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 444 WPGNIRELRNMMERlALFLSVEP---TPDLTPQFLQLLLP----------------ELARESAKIPSpslltpqQALEKF 504
Cdd:PRK11361 358 WPGNIRELSNVIER-AVVMNSGPiifSEDLPPQIRQPVCNagevktapvgernlkeEIKRVEKRIIM-------EVLEQQ 429
|
330 340
....*....|....*....|...
gi 1550638938 505 NGDKTAAANYLGISRTTFWRRLK 527
Cdd:PRK11361 430 EGNRTRTALMLGISRRALMYKLQ 452
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
217-527 |
8.35e-90 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 283.17 E-value: 8.35e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARQGKkshPFVAVNCGAIAESLLEAELF 296
Cdd:TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHR-----HSPRANG---PFIALNMAAIPKDLIESELF 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 297 GYEEGAFTGS--RRGGRaglFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:TIGR01818 207 GHEKGAFTGAntRRQGR---FEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEAL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 375 MRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKVSLAALSAPfsaaLRQGLQASETVLVHYDWPGNIRELRNM 454
Cdd:TIGR01818 284 VRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE----PKLLDPEALERLKQLRWPGNVRQLENL 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 455 MERLALF--------------LSVEPTPDLTP-----QFLQLLLPELARESAKIPSPSLLTPQQ----------ALEKFN 505
Cdd:TIGR01818 360 CRWLTVMasgdevlvsdlpaeLALTGRPASAPdsdgqDSWDEALEAWAKQALSRGEQGLLDRALpeferplleaALQHTR 439
|
330 340
....*....|....*....|..
gi 1550638938 506 GDKTAAANYLGISRTTFWRRLK 527
Cdd:TIGR01818 440 GHKQEAAALLGWGRNTLTRKLK 461
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
178-519 |
3.79e-86 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 275.13 E-value: 3.79e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 178 SAATVRQAFS-DALDMTRMSLRHNTHDATRNALRTryvlGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256
Cdd:PRK05022 152 AAATLRNALLiEQLESQAELPQDVAEFLRQEALKE----GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVA 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 257 QAIHReyfarHDARQGKkshPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQ 336
Cdd:PRK05022 228 RAIHA-----ASPRADK---PLVYLNCAALPESLAESELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQ 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFL--- 413
Cdd:PRK05022 299 AKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLeqn 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 414 KVSLAALSAPFSAALRQGLQAsetvlvhYDWPGNIRELRNMMERLALFLSVEPTPD---LTPQFLQLLLPELARESAKIP 490
Cdd:PRK05022 379 RARLGLRSLRLSPAAQAALLA-------YDWPGNVRELEHVISRAALLARARGAGRivtLEAQHLDLPAEVALPPPEAAA 451
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1550638938 491 SPSLLTPQ---------------QALEKFNGDKTAAANYLGISR 519
Cdd:PRK05022 452 APAAVVSQnlreateafqrqlirQALAQHQGNWAAAARALELDR 495
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
218-485 |
1.01e-84 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 271.29 E-value: 1.01e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 218 MLGQSPQMEQV-RQtillyARSSAAV----LIEGETGTGKELAAQAIHReyfarHDARQGKkshPFVAVNCGAIAESLLE 292
Cdd:COG3283 206 IVASSPKMRQViRQ-----AKKMAMLdaplLIQGETGTGKELLARACHL-----ASPRGDK---PFLALNCAALPDDVAE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 293 AELFGYEEGAFtGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372
Cdd:COG3283 273 SELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 373 EDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKVSLAALSAP---FSAALRQGLQasetvlvHYDWPGNIR 449
Cdd:COG3283 352 ELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPrprLSPDLVDFLQ-------SYPWPGNVR 424
|
250 260 270
....*....|....*....|....*....|....*.
gi 1550638938 450 ELRNMMERlALFLSVEPTpdLTPQFLQllLPELARE 485
Cdd:COG3283 425 QLENALYR-AVSLLEGDE--LTPEDLQ--LPEYAAS 455
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
198-527 |
1.87e-82 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 264.43 E-value: 1.87e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 198 RHNTHDATRNALRTRYVLG---DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARqgkK 274
Cdd:PRK10923 117 RAISHYQEQQQPRNIQVNGpttDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR-----HSPR---A 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 354
Cdd:PRK10923 189 KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGY 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 355 QPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKVslaalsapfsAALRQGLQA 434
Cdd:PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQV----------AARELGVEA 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 435 ------SETVLVHYDWPGNIRELRNMMERLA----------------LFLSVEP--TPDLTPQFLQLLLPELARESAKIP 490
Cdd:PRK10923 338 kllhpeTEAALTRLAWPGNVRQLENTCRWLTvmaagqevliqdlpgeLFESTVPesTSQMQPDSWATLLAQWADRALRSG 417
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1550638938 491 SPSLLTPQQ----------ALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:PRK10923 418 HQNLLSEAQpelertllttALRHTQGHKQEAARLLGWGRNTLTRKLK 464
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
215-523 |
4.05e-82 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 262.76 E-value: 4.05e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAE 294
Cdd:TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALH--------QLSDRKDKRFVAINCAAIPENLLESE 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 295 LFGYEEGAFTGSRRGGRaGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:TIGR02915 210 LFGYEKGAFTGAVKQTL-GKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRM 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 375 MRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLK---VSLAALSAPFSAALRQGLQasetvlvHYDWPGNIREL 451
Cdd:TIGR02915 289 IAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLErfaRELKRKTKGFTDDALRALE-------AHAWPGNVREL 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 452 RNMMERLALF----------LSVEPTPDlTPQFLQLLLPElARESAKipspsLLTPQQALEKFNGDKTAAANYLGISRTT 521
Cdd:TIGR02915 362 ENKVKRAVIMaegnqitaedLGLDARER-AETPLEVNLRE-VRERAE-----REAVRKAIARVDGNIARAAELLGITRPT 434
|
..
gi 1550638938 522 FW 523
Cdd:TIGR02915 435 LY 436
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
218-526 |
3.64e-81 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 259.96 E-value: 3.64e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAELFG 297
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH--------ASSARSEKPLVTLNCAALNESLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 298 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQ 377
Cdd:PRK10365 213 HEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNA 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 378 GQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKvslaalsaPFSAALRQGLQA----SETVLVHYDWPGNIRELRN 453
Cdd:PRK10365 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQ--------RFAERNRKAVKGftpqAMDLLIHYDWPGNIRELEN 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 454 MMERLALFLSVEPTPDLTpqflqllLPeLARESAKIPSPSLLTPQ-----------QALEKFNGDKTAAANYLGISRTTF 522
Cdd:PRK10365 364 AVERAVVLLTGEYISERE-------LP-LAIASTPIPLGQSQDIQplvevekevilAALEKTGGNKTEAARQLGITRKTL 435
|
....
gi 1550638938 523 WRRL 526
Cdd:PRK10365 436 LAKL 439
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
179-459 |
1.60e-80 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 261.19 E-value: 1.60e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 179 AATVRQAFSDALDMTRMS-----LRHNTHDATRNALRTRYVLGDML-GQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252
Cdd:TIGR01817 153 GQTVRLHRLVAQRRERLIaeavqLSKQLRDKAPEIARRRSGKEDGIiGKSPAMRQVVDQARVVARSNSTVLLRGESGTGK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 253 ELAAQAIHReyfarHDARQGKkshPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRgGRAGLFEIAHGGTLFLDEIGEMP 332
Cdd:TIGR01817 233 ELIAKAIHY-----LSPRAKR---PFVKVNCAALSETLLESELFGHEKGAFTGAIA-QRKGRFELADGGTLFLDEIGEIS 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESF 412
Cdd:TIGR01817 304 PAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAF 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1550638938 413 LK---------VSLAAlsapfsAALRqglqasetVLVHYDWPGNIRELRNMMERLA 459
Cdd:TIGR01817 384 LEkfnrengrpLTITP------SAIR--------VLMSCKWPGNVRELENCLERTA 425
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
219-457 |
1.02e-72 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 234.50 E-value: 1.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 219 LGQSPQ----MEQVRQTillyARSSAAVLIEGETGTGKELAAQAIHreYFARhdaR-QGkkshPFVAVNCGAIAESLLEA 293
Cdd:TIGR02974 2 IGESNAflevLEQVSRL----APLDRPVLIIGERGTGKELIAARLH--YLSK---RwQG----PLVKLNCAALSENLLDS 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 294 ELFGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373
Cdd:TIGR02974 69 ELFGHEAGAFTGAQKR-HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 374 DMRQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFlKVSLAA-----LSAPFSAALRQGLQAsetvlvhYDWPGNI 448
Cdd:TIGR02974 148 LAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHF-AIRMARelglpLFPGFTPQAREQLLE-------YHWPGNV 219
|
....*....
gi 1550638938 449 RELRNMMER 457
Cdd:TIGR02974 220 RELKNVVER 228
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
160-526 |
1.37e-71 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 235.12 E-value: 1.37e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 160 GLITDlAEEAGMTGIFIYSAATV-RQAFSDALDMTRMSLRHNTHDATRNALRTRyvlgdmlgqSPQMEQVRQTILLYARS 238
Cdd:PRK15115 87 GSIPD-AVAATQQGVFSFLTKPVdRDALYKAIDDALEQSAPATDERWREAIVTR---------SPLMLRLLEQARMVAQS 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 239 SAAVLIEGETGTGKELAAQAIHREyfarhDARQGKkshPFVAVNCGAIAESLLEAELFGYEEGAFTGSRrGGRAGLFEIA 318
Cdd:PRK15115 157 DVSVLINGQSGTGKEILAQAIHNA-----SPRASK---PFIAINCGALPEQLLESELFGHARGAFTGAV-SNREGLFQAA 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPL 398
Cdd:PRK15115 228 EGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPAL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 399 RERVTDILPLAESFLKVSlAALSAPF-----SAALRQGLQASetvlvhydWPGNIRELRNMMERLALFLSVEPTPD-LTP 472
Cdd:PRK15115 308 AERTEDIPLLANHLLRQA-AERHKPFvrafsTDAMKRLMTAS--------WPGNVRQLVNVIEQCVALTSSPVISDaLVE 378
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1550638938 473 QFLQ---LLLPELARESAKIPSPSLltpQQALEKFNGDKTAAANYLGISRTTFWRRL 526
Cdd:PRK15115 379 QALEgenTALPTFVEARNQFELNYL---RKLLQITKGNVTHAARMAGRNRTEFYKLL 432
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
218-487 |
1.14e-64 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 218.79 E-value: 1.14e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarHDARqGKKshPFVAVNCGAIAESLLEAELFG 297
Cdd:PRK10820 206 IVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL-----RSPR-GKK--PFLALNCASIPDDVVESELFG 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 298 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQ 377
Cdd:PRK10820 278 HAPGAYPNALEG-KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 378 GQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFLkvslaalsAPFsaALRQGLQ----ASE--TVLVHYDWPGNIREL 451
Cdd:PRK10820 357 GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFV--------ARF--ADEQGVPrpklAADlnTVLTRYGWPGNVRQL 426
|
250 260 270
....*....|....*....|....*....|....*.
gi 1550638938 452 RNMMERLalfLSVEPTPDLTPQflQLLLPELARESA 487
Cdd:PRK10820 427 KNAIYRA---LTQLEGYELRPQ--DILLPDYDAAVA 457
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
216-527 |
2.59e-64 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 221.63 E-value: 2.59e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVAVNCGAIAESLLEAEL 295
Cdd:PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN--------LSGRNNRRMVKMNCAAMPAGLLESDL 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 296 FGYEEGAFTGSRrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375
Cdd:PRK15429 448 FGHERGAFTGAS-AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 376 RQGQFRRDLFYRLSILRLQLPPLRERVTDILPLAESFlkvslaalsaPFSAALRQGLQ----ASETV--LVHYDWPGNIR 449
Cdd:PRK15429 527 ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAF----------TFKIARRMGRNidsiPAETLrtLSNMEWPGNVR 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 450 ELRNMMERLALflsveptpdLT-PQFLQLLLPELARESAKIPSPSLLTPQQA----------LEKFNG---DKTAAANYL 515
Cdd:PRK15429 597 ELENVIERAVL---------LTrGNVLQLSLPDITLPEPETPPAATVVAQEGedeyqlivrvLKETNGvvaGPKGAAQRL 667
|
330
....*....|..
gi 1550638938 516 GISRTTFWRRLK 527
Cdd:PRK15429 668 GLKRTTLLSRMK 679
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
225-457 |
4.72e-64 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 211.45 E-value: 4.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 225 MEQVRQtillYARSSAAVLIEGETGTGKELAAQAIHreYFArhDARQGkkshPFVAVNCGAIAESLLEAELFGYEEGAFT 304
Cdd:PRK11608 19 LEQVSR----LAPLDKPVLIIGERGTGKELIASRLH--YLS--SRWQG----PFISLNCAALNENLLDSELFGHEAGAFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 305 G--SRRGGRaglFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRR 382
Cdd:PRK11608 87 GaqKRHPGR---FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1550638938 383 DLFYRLSILRLQLPPLRERVTDILPLAESFLKVSLAALSAPFSAALRQglQASETvLVHYDWPGNIRELRNMMER 457
Cdd:PRK11608 164 DLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTE--RARET-LLNYRWPGNIRELKNVVER 235
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
210-527 |
3.03e-61 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 212.62 E-value: 3.03e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 210 RTRYVLGDMLGQSPQMEQV----RQTillyARSSAAVLIEGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGA 285
Cdd:PRK11388 319 KVSHTFDHMPQDSPQMRRLihfgRQA----AKSSFPVLLCGEEGVGKALLAQAIHNE--------SERAAGPYIAVNCQL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 286 IAESLLEAELFGYEEGaftgSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365
Cdd:PRK11388 387 YPDEALAEEFLGSDRT----DSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 366 ATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRERVTDIlplaESFLKVSLAALSAPFSAALRQGlQASETVLVHYDWP 445
Cdd:PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDI----PALVNNKLRSLEKRFSTRLKID-DDALARLVSYRWP 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 446 GNIRELRNMMERLALF-----LSVEPTPDltpqflqLLLPELARESAKIPSPSLLTPQQALEK---------FNGDKTAA 511
Cdd:PRK11388 538 GNDFELRSVIENLALSsdngrIRLSDLPE-------HLFTEQATDDVSATRLSTSLSLAELEKeaiinaaqvCGGRIQEM 610
|
330
....*....|....*.
gi 1550638938 512 ANYLGISRTTFWRRLK 527
Cdd:PRK11388 611 AALLGIGRTTLWRKMK 626
|
|
| PrpR_N |
pfam06506 |
Propionate catabolism activator; This domain is found at the N terminus of several sigma54- ... |
34-198 |
6.97e-60 |
|
Propionate catabolism activator; This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Pssm-ID: 428980 [Multi-domain] Cd Length: 165 Bit Score: 195.04 E-value: 6.97e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 34 DHLANITPIQLGFEKAVTYIRKkLASERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ 113
Cdd:pfam06506 1 ELDADITVVVGDLEEAVELARE-LEAEGVDVIISRGGTAALLRKHVSIPVVEIPVSGYDILRALALAKKLGEKIAIVGFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 114 ETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS-AATVRQAFSDALDM 192
Cdd:pfam06506 80 NIIPGLKTLSDLLGLDIEQYTYSSEEEAEAAVKELKAQGVEVVVGDGVVVDLAEKAGLNGVLLTSgKESVRQAIDEALEL 159
|
....*.
gi 1550638938 193 TRMSLR 198
Cdd:pfam06506 160 ARARRR 165
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
240-527 |
2.35e-57 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 194.30 E-value: 2.35e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 240 AAVLIEGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVAVNCGAIAESLLEAelfgyeegaftgsrrggraglfeiah 319
Cdd:COG3604 116 AAVAILGETGTGKELVANAIHE--------LSPRADKPFVKVNCAALPESLLES-------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 320 ggtlfldeigemplplqtrllrvLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLR 399
Cdd:COG3604 162 -----------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLR 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 400 ERVTDILPLAESFLKVSLAALSAPFSAALRQGLQAsetvLVHYDWPGNIRELRNMMERLALflsVEPTPDLTPQFLQLLL 479
Cdd:COG3604 219 ERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEA----LMAYPWPGNVRELENVIERAVI---LAEGGVLDADDLAPGS 291
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1550638938 480 PELARESAKIpspsllTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:COG3604 292 REALEEVERE------HILEALERTGGNIAGAARLLGLTPSTLRSRMK 333
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
224-459 |
2.26e-34 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 136.12 E-value: 2.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 224 QMEQVRQtillyaRSSAAVLIEGETGTGKELAAQAIHREYFARHDArqgkkSHPFVAVNC----GAIAESlleaELFGYE 299
Cdd:COG4650 199 QIERVAI------RSRAPILLTGPTGAGKSQLARRIYELKKARHQV-----SGRFVEVNCatlrGDGAMS----ALFGHV 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 300 EGAFTGSrRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMRQGQ 379
Cdd:COG4650 264 KGAFTGA-VSDRAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 380 FRRDLFYRLSILRLQLPPLRERVTDILPLAESFLKVSLAAL--SAPFSAALRQ-------GLQASetvlvhydWPGNIRE 450
Cdd:COG4650 343 FREDLLARINLWTFRLPGLAERREDIEPNLDYELARFAREQgrRVRFNKEARArylafatSPEAL--------WSGNFRD 414
|
....*....
gi 1550638938 451 LRNMMERLA 459
Cdd:COG4650 415 LNASVTRMA 423
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
242-453 |
1.04e-23 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 105.57 E-value: 1.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 242 VLIEGETGTGKELAAQAIHReyFARHDARQGKKShPFVAVNCGAIAES--LLEAELFGYEEGAFTGSRRGgRAGLFEIAH 319
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYE--YAIEIGVLPEDA-PFVVFNCADYANNpqLLMSQLFGYVKGAFTGADKD-KEGLIEKAD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 320 GGTLFLDEI------G-EMplpLQTrLL-----RVLEEKEVTRvgghqpvPVDVRVISATHCNLEEDMRQgQFRRdlfyR 387
Cdd:COG1221 209 GGILFLDEVhrlppeGqEM---LFT-FMdkgiyRRLGETEKTR-------KANVRIIFATTEDPESSLLK-TFLR----R 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 388 LSILrLQLPPLRERvtdilPLAESF-----------------LKVSLAALSApfsaalrqglqasetvLVHYDWPGNIRE 450
Cdd:COG1221 273 IPMV-IKLPSLEER-----SLEERLelikhffkeeakrlnkpIKVSKEVLKA----------------LLLYDCPGNIGQ 330
|
...
gi 1550638938 451 LRN 453
Cdd:COG1221 331 LKS 333
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
220-397 |
4.21e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 95.29 E-value: 4.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 220 GQSPQMEQVRQtiLLYARSSAAVLIEGETGTGKELAAQAIHREYFarhdarqgKKSHPFVAVNCGAIAESLLEAELFGYE 299
Cdd:cd00009 2 GQEEAIEALRE--ALELPPPKNLLLYGPPGTGKTTLARAIANELF--------RPGAPFLYLNASDLLEGLVVAELFGHF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 300 EgaftgsrRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRvgghqPVPVDVRVISATHcnleeDMRQGQ 379
Cdd:cd00009 72 L-------VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATN-----RPLLGD 134
|
170
....*....|....*...
gi 1550638938 380 FRRDLFYRLSIlRLQLPP 397
Cdd:cd00009 135 LDRALYDRLDI-RIVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
219-398 |
1.30e-17 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 79.31 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAVNCGAIAESLLEAelfgy 298
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNP--------STPWVQPFDIEYLAHAPLELLEQ----- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 299 eegaftgsrrggraglfeiAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEvtrvgghqpvPVDVRVISATHCNLEEDMRQG 378
Cdd:pfam14532 68 -------------------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAG 118
|
170 180
....*....|....*....|
gi 1550638938 379 QFRRDLFYRLSILRLQLPPL 398
Cdd:pfam14532 119 LFDEQLYFELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
242-374 |
4.57e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 242 VLIEGETGTGKELAAQAIHREYfarhdarqGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA-GLFEIAHG 320
Cdd:smart00382 5 ILIVGPPGSGKTTLARALAREL--------GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLrLALALARK 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1550638938 321 ---GTLFLDEIGEMPLPLQTRLLRVLEEkevTRVGGHQPVPVDVRVISATHCNLEED 374
Cdd:smart00382 77 lkpDVLILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEKDLG 130
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
498-527 |
1.76e-07 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 47.39 E-value: 1.76e-07
10 20 30
....*....|....*....|....*....|
gi 1550638938 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527
Cdd:pfam02954 10 EAALERTGGNKSKAARLLGISRRTLYRKLK 39
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
242-368 |
2.27e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 38.43 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1550638938 242 VLIEGETGTGK-ELAaqaihrEYFARHDARQgkkshPFVAVNCGAiaeSLLEAELFG-YEEGAFTGSRRGG---RAGLfe 316
Cdd:pfam07728 2 VLLVGPPGTGKtELA------ERLAAALSNR-----PVFYVQLTR---DTTEEDLFGrRNIDPGGASWVDGplvRAAR-- 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1550638938 317 iaHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV---DVRVISATH 368
Cdd:pfam07728 66 --EGEIAVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN 118
|
|
| |
