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Conserved domains on  [gi|1544990293|gb|RUK75425|]
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DUF3302 domain-containing protein [Shigella boydii]

Protein Classification

DUF3302 domain-containing protein( domain architecture ID 10570138)

DUF3302 domain-containing protein similar to Escherichia coli inner membrane protein YiaW and uncharacterized protein YibI

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 5.56e-40

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


:

Pssm-ID: 432040  Cd Length: 77  Bit Score: 127.54  E-value: 5.56e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1544990293   3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQN 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
 
Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 5.56e-40

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


Pssm-ID: 432040  Cd Length: 77  Bit Score: 127.54  E-value: 5.56e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1544990293   3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQN 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
 
Name Accession Description Interval E-value
DUF3302 pfam11742
Protein of unknown function (DUF3302); This family of unknown function is expressed by ...
 3-79 5.56e-40

Protein of unknown function (DUF3302); This family of unknown function is expressed by proteobacteria.


Pssm-ID: 432040  Cd Length: 77  Bit Score: 127.54  E-value: 5.56e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1544990293   3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQN 79
Cdd:pfam11742   1 LDYFALIVLIFVVAVVFYGFIALHDIPYEIAKRRNHPHADAIHVAGWVSLFTLHVLWPFLWIWAYLYRPARGWGFQS 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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